Guide to the Human Genome
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Name: RBAK Sequence: fasta or formatted (714aa) NCBI GI: 13430850
Description:

RB-associated KRAB repressor

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.4         17           2
 C cysteine            6.0         43           1
 D aspartate           2.7         19           2
 E glutamate          10.9         78           2
 F phenylalanine       4.5         32           2
 G glycine             5.9         42           2
 H histidine           6.4         46           2
 I isoleucine          3.6         26           2
 K lysine              8.7         62           2
 L leucine             5.5         39           1
 M methionine          1.5         11           1
 N asparagine          5.3         38           1
 P proline             3.8         27           1
 Q glutamine           4.2         30           2
 R arginine            4.5         32           2
 S serine              9.2         66           2
 T threonine           5.6         40           2
 V valine              3.4         24           1
 W tryptophan          0.6          4           1
 Y tyrosine            5.3         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RB-associated KRAB repressor 
ZNF12                 0.645   zinc finger protein 12 isoform a 
ZNF12                 0.624   zinc finger protein 12 isoform b 
ZNF33B                0.463   zinc finger protein 33B 
ZNF33A                0.454   zinc finger protein 33A isoform a 
ZNF33A                0.450   zinc finger protein 33A isoform b 
ZNF184                0.438   zinc finger protein 184 
ZNF569                0.438   zinc finger protein 569 
LOC100287429          0.431   PREDICTED: hypothetical protein XP_002343926 isofor...
LOC100287429          0.431   PREDICTED: hypothetical protein XP_002343925 isofor...
LOC100287429          0.431   PREDICTED: hypothetical protein XP_002343927 isofor...
ZNF84                 0.431   zinc finger protein 84 
ZNF84                 0.431   zinc finger protein 84 
ZNF268                0.430   zinc finger protein 268 
ZNF585B               0.419   zinc finger protein 585B 
ZNF717                0.418   zinc finger protein 717 
ZNF624                0.416   zinc finger protein 624 
ZNF420                0.410   zinc finger protein 420 
LOC100287163          0.409   PREDICTED: hypothetical protein XP_002343923 
ZNF334                0.409   zinc finger protein 334 isoform a 
ZNF160                0.403   zinc finger protein 160 
ZNF160                0.403   zinc finger protein 160 
ZNF160                0.403   zinc finger protein 160 
ZNF484                0.399   zinc finger protein 484 isoform a 
ZNF616                0.399   zinc finger protein 616 
ZNF41                 0.399   zinc finger protein 41 
ZNF41                 0.399   zinc finger protein 41 
ZNF546                0.397   zinc finger protein 546 
ZNF347                0.396   zinc finger protein 347 
ZNF845                0.395   zinc finger protein 845 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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