Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RPA4 Sequence: fasta or formatted (261aa) NCBI GI: 9558731
Description:

replication protein A4, 34kDa

Referenced in:

Replication Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         16           2
 C cysteine            2.3          6           1
 D aspartate           6.9         18           2
 E glutamate           6.9         18           1
 F phenylalanine       3.1          8           1
 G glycine             6.1         16           2
 H histidine           3.8         10           1
 I isoleucine          7.3         19           2
 K lysine              6.9         18           1
 L leucine             6.1         16           2
 M methionine          1.9          5           2
 N asparagine          3.1          8           1
 P proline             4.2         11           1
 Q glutamine           3.8         10           1
 R arginine            5.0         13           2
 S serine              8.0         21           2
 T threonine           5.0         13           2
 V valine             11.1         29           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   replication protein A4, 34kDa 
RPA2                  0.369   replication protein A2, 32kDa 
TJP1                  0.008   tight junction protein 1 isoform b 
TJP1                  0.008   tight junction protein 1 isoform a 
SIK2                  0.008   SNF1-like kinase 2 
C6orf97               0.008   hypothetical protein LOC80129 
SRRM2                 0.008   splicing coactivator subunit SRm300 
SMARCAD1              0.006   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.006   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.006   SWI/SNF-related, matrix-associated actin-dependent ...
ZFAND2A               0.006   zinc finger, AN1-type domain 2A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press