Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 226528258
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
(122 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens] 236 2e-63
gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens] 236 2e-63
gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens] 236 2e-63
gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens] 230 2e-61
gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens] 192 5e-50
gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens] 186 4e-48
gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens] 169 4e-43
gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens] 125 8e-30
gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens] 34 0.024
gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens] 34 0.024
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 33 0.040
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 33 0.040
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens] 33 0.053
gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens] 33 0.069
gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens] 33 0.069
gi|7705415 hook homolog 1 [Homo sapiens] 32 0.090
gi|8922940 gamma-taxilin [Homo sapiens] 32 0.090
gi|39812492 TH1-like protein [Homo sapiens] 32 0.12
gi|116517224 coiled-coil domain containing 144B [Homo sapiens] 32 0.12
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 32 0.15
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 32 0.15
gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens] 32 0.15
gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens] 32 0.15
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 32 0.15
gi|154354990 ankyrin repeat domain 26 [Homo sapiens] 32 0.15
gi|153945715 myosin VC [Homo sapiens] 31 0.20
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens] 31 0.26
gi|224451082 cytospin A [Homo sapiens] 31 0.26
gi|224451080 cytospin A [Homo sapiens] 31 0.26
gi|224586773 hypothetical protein LOC643854 [Homo sapiens] 31 0.26
>gi|226528212 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 236 bits (603), Expect = 2e-63
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK
Sbjct: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
Query: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK
Sbjct: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
Query: 121 RK 122
RK
Sbjct: 121 RK 122
>gi|226528328 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 236 bits (603), Expect = 2e-63
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK
Sbjct: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
Query: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK
Sbjct: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
Query: 121 RK 122
RK
Sbjct: 121 RK 122
>gi|226528258 short coiled-coil protein isoform 4 [Homo sapiens]
Length = 122
Score = 236 bits (603), Expect = 2e-63
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK
Sbjct: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
Query: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK
Sbjct: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
Query: 121 RK 122
RK
Sbjct: 121 RK 122
>gi|226528371 short coiled-coil protein isoform 5 [Homo sapiens]
Length = 121
Score = 230 bits (587), Expect = 2e-61
Identities = 121/122 (99%), Positives = 121/122 (99%), Gaps = 1/122 (0%)
Query: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEK
Sbjct: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEK 59
Query: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK
Sbjct: 60 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 119
Query: 121 RK 122
RK
Sbjct: 120 RK 121
>gi|226528280 short coiled-coil protein isoform 1 [Homo sapiens]
Length = 159
Score = 192 bits (488), Expect = 5e-50
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 120
Query: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 121 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 159
>gi|226528395 short coiled-coil protein isoform 2 [Homo sapiens]
Length = 158
Score = 186 bits (472), Expect = 4e-48
Identities = 98/99 (98%), Positives = 98/99 (98%), Gaps = 1/99 (1%)
Query: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
DHSSRILYPRPKSLLPKMMNADMD VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMD-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 119
Query: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 120 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 158
>gi|226528419 short coiled-coil protein isoform 6 [Homo sapiens]
Length = 94
Score = 169 bits (429), Expect = 4e-43
Identities = 94/122 (77%), Positives = 94/122 (77%), Gaps = 28/122 (22%)
Query: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEK 60
MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMD
Sbjct: 1 MDGSRKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMD------------- 47
Query: 61 TRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK
Sbjct: 48 ---------------DLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 92
Query: 121 RK 122
RK
Sbjct: 93 RK 94
>gi|226528302 short coiled-coil protein isoform 3 [Homo sapiens]
Length = 131
Score = 125 bits (314), Expect = 8e-30
Identities = 71/99 (71%), Positives = 71/99 (71%), Gaps = 28/99 (28%)
Query: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDA 83
DHSSRILYPRPKSLLPKMMNADMD DLSARVDA
Sbjct: 61 DHSSRILYPRPKSLLPKMMNADMD----------------------------DLSARVDA 92
Query: 84 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK
Sbjct: 93 VKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 131
>gi|57768564 hypothetical protein LOC23281 isoform b [Homo sapiens]
Length = 348
Score = 34.3 bits (77), Expect = 0.024
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 5 RKEEEEDSTFTNISLADDID------HSSRILYPRPKSLLPKMMNADMDAVDAENQVELE 58
+KE EE+ +SL D +D S R R + L K ++ A Q LE
Sbjct: 157 KKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQ-HLE 215
Query: 59 EKTRLINQVLELQ----HTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 105
E + + QVLE++ H E ++ + E+N+ L+ + QVL Q E+L
Sbjct: 216 EDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 266
Score = 32.0 bits (71), Expect = 0.12
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 51 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 103
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 246 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 292
>gi|140161498 hypothetical protein LOC23281 isoform a [Homo sapiens]
Length = 1379
Score = 34.3 bits (77), Expect = 0.024
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 5 RKEEEEDSTFTNISLADDID------HSSRILYPRPKSLLPKMMNADMDAVDAENQVELE 58
+KE EE+ +SL D +D S R R + L K ++ A Q LE
Sbjct: 1188 KKELEENFEKLRLSLQDQVDTLTFQSQSLRDRARRFEEALRKNTEEQLEIALAPYQ-HLE 1246
Query: 59 EKTRLINQVLELQ----HTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 105
E + + QVLE++ H E ++ + E+N+ L+ + QVL Q E+L
Sbjct: 1247 EDMKSLKQVLEMKNQQIHEQEKKILELEKLAEKNIILEEKIQVLQQQNEDL 1297
Score = 32.0 bits (71), Expect = 0.12
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 51 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 103
AE + LEEK QVL+ Q+ EDL AR+D +L EN L +Y+E
Sbjct: 1277 AEKNIILEEKI----QVLQQQN--EDLKARIDQNTVVTRQLSEENANLQEYVE 1323
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 33.5 bits (75), Expect = 0.040
Identities = 19/64 (29%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 46 MDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 105
++A++ EN ELE + R + + L+ + ++L+ +++++++EN +L EN L + +E+L
Sbjct: 658 IEALEQENS-ELERENRKLKKTLD---SFKNLTFQLESLEKENSQLDEENLELRRNVESL 713
Query: 106 MSAS 109
AS
Sbjct: 714 KCAS 717
Score = 29.6 bits (65), Expect = 0.58
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 70 LQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
LQ TLE+ + ++ ++ E L+ ENQ L + +E L +S + + ++K
Sbjct: 768 LQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENK 818
Score = 29.3 bits (64), Expect = 0.76
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 40 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLG 99
+M ++DA+ E V +++ +++ E H +E ARV+ +KE+N L +L
Sbjct: 306 RMYRDELDAL-REKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLE 364
Query: 100 QYIENLMSAS 109
+E + S
Sbjct: 365 DQLEGTRARS 374
Score = 26.9 bits (58), Expect = 3.8
Identities = 23/119 (19%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 6 KEEEEDSTFTNISLADDIDHSSRILYPRP--KSLLPKMMNADMDAVDAENQVELEEKTRL 63
K+ E+++ + S+ + S+I + + K L A + EN++ EK
Sbjct: 583 KDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKE-- 640
Query: 64 INQVLELQHT-LEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 121
N++L+ + T L+ +++A+++EN +L+ EN+ L + +++ + + ++ + ++ +
Sbjct: 641 -NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQ 698
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 42 MNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQY 101
+ A+ A+ + + + L Q+L LQ L + ++ +N KL+ EN L
Sbjct: 1058 LQAEKQALKTQLKQLETQNNNLQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQ 1117
Query: 102 IENLMSASS 110
+LM+ ++
Sbjct: 1118 STSLMNQNA 1126
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 33.5 bits (75), Expect = 0.040
Identities = 19/64 (29%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 46 MDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 105
++A++ EN ELE + R + + L+ + ++L+ +++++++EN +L EN L + +E+L
Sbjct: 658 IEALEQENS-ELERENRKLKKTLD---SFKNLTFQLESLEKENSQLDEENLELRRNVESL 713
Query: 106 MSAS 109
AS
Sbjct: 714 KCAS 717
Score = 29.6 bits (65), Expect = 0.58
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 70 LQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSK 120
LQ TLE+ + ++ ++ E L+ ENQ L + +E L +S + + ++K
Sbjct: 768 LQKTLENSNKKIQQLESELQDLEMENQTLQKNLEELKISSKRLEQLEKENK 818
Score = 29.3 bits (64), Expect = 0.76
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 40 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLG 99
+M ++DA+ E V +++ +++ E H +E ARV+ +KE+N L +L
Sbjct: 306 RMYRDELDAL-REKAVRVDKLESEVSRYKERLHDIEFYKARVEELKEDNQVLLETKTMLE 364
Query: 100 QYIENLMSAS 109
+E + S
Sbjct: 365 DQLEGTRARS 374
Score = 26.9 bits (58), Expect = 3.8
Identities = 23/119 (19%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 6 KEEEEDSTFTNISLADDIDHSSRILYPRP--KSLLPKMMNADMDAVDAENQVELEEKTRL 63
K+ E+++ + S+ + S+I + + K L A + EN++ EK
Sbjct: 583 KDIEKENKILHESIKETSSKLSKIEFEKRQIKKELEHYKEKGERAEELENELHHLEKE-- 640
Query: 64 INQVLELQHT-LEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKR 121
N++L+ + T L+ +++A+++EN +L+ EN+ L + +++ + + ++ + ++ +
Sbjct: 641 -NELLQKKITNLKITCEKIEALEQENSELERENRKLKKTLDSFKNLTFQLESLEKENSQ 698
Score = 26.9 bits (58), Expect = 3.8
Identities = 16/69 (23%), Positives = 32/69 (46%)
Query: 42 MNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQY 101
+ A+ A+ + + + L Q+L LQ L + ++ +N KL+ EN L
Sbjct: 1057 LQAEKQALKTQLKQLETQNNNLQAQILALQRQTVSLQEQNTTLQTQNAKLQVENSTLNSQ 1116
Query: 102 IENLMSASS 110
+LM+ ++
Sbjct: 1117 STSLMNQNA 1125
>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
Length = 446
Score = 33.1 bits (74), Expect = 0.053
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 5 RKEEEEDS-TFTNISLADDIDHSSRILYPRPKSLLPKMM-----NADMDAVDAENQVELE 58
R E EED T ++I+ ++ L + L + N+DM A + Q ELE
Sbjct: 126 RPENEEDILVVTTQGEVEEIEQHNKELCKENQELKDSCISLQKQNSDMQAELQKKQEELE 185
Query: 59 EKTRLINQVLELQ--HTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 110
+ IN+ LEL+ + + +KE+N K+ SEN+ +G ++ L + S
Sbjct: 186 T-LQSINKKLELKVKEQKDYWETELLQLKEQNQKMSSENEKMGIRVDQLQAQLS 238
>gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens]
Length = 180
Score = 32.7 bits (73), Expect = 0.069
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 44 ADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEEN 88
A +DA A+ Q ++EE L ++ L H L+D SA V+ ++ EN
Sbjct: 100 ASLDAEKAQGQKKVEE---LEGEITTLNHKLQDASAEVERLRREN 141
>gi|41406064 myosin, heavy polypeptide 10, non-muscle [Homo sapiens]
Length = 1976
Score = 32.7 bits (73), Expect = 0.069
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 35 KSLLPKMMNADMDA-VDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKS 93
K++L + + A+ + +AE E + RL + EL+ L DL +RV+ +E N L++
Sbjct: 889 KNILAEQLQAETELFAEAE-----EMRARLAAKKQELEEILHDLESRVEEEEERNQILQN 943
Query: 94 ENQVLGQYIENL 105
E + + +I++L
Sbjct: 944 EKKKMQAHIQDL 955
Score = 30.4 bits (67), Expect = 0.34
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 40 KMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVD-------AVKEENLKLK 92
+ + + +++ + + E E + L QVL LQ L D +VD +++E KL
Sbjct: 1339 RQLEEEKNSLQEQQEEEEEARKNLEKQVLALQSQLADTKKKVDDDLGTIESLEEAKKKLL 1398
Query: 93 SENQVLGQYIENLMSASSVFQTTDTKSKRK 122
+ + L Q +E A + T + +++
Sbjct: 1399 KDAEALSQRLEEKALAYDKLEKTKNRLQQE 1428
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 32.3 bits (72), Expect = 0.090
Identities = 21/101 (20%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 7 EEEEDSTFTNISLADDIDH--SSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLI 64
E++++ ++L + + H + I K +L N + ++ + + LEE +
Sbjct: 132 EKKQEHIQNIMTLEESVQHVVMTAIQELMSKEILSSPPNDAVGELEQQLKRALEELQEAL 191
Query: 65 NQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENL 105
+ EL+ E+L +V +++E L SEN+++ + ++ L
Sbjct: 192 AEKEELRQRCEELDMQVTTLQDEKNSLVSENEMMNEKLDQL 232
>gi|8922940 gamma-taxilin [Homo sapiens]
Length = 528
Score = 32.3 bits (72), Expect = 0.090
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 24 DHSSRILYPRPKSLLPKMMNADMDAVDAEN-QVELEEKTRLINQVLELQHTLEDLSARVD 82
+HS IL L + + + EN Q EE+ R Q TL+++ A+++
Sbjct: 197 EHSKAILARSKLESLCRELQRHNKTLKEENMQQAREEEERRKEATAHFQITLDEIQAQLE 256
Query: 83 AVKEENLKLKSENQVLGQYIENLM 106
N KL+ EN LG+ ++ L+
Sbjct: 257 QHDIHNAKLRQENIELGEKLKKLI 280
>gi|39812492 TH1-like protein [Homo sapiens]
Length = 590
Score = 32.0 bits (71), Expect = 0.12
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 9 EEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLINQVL 68
+ D T +++L D+I ++L+P+ LL K+ + +D Q+EL K L+++++
Sbjct: 444 QTDHTPVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLEL--KKTLLDRMV 501
Query: 69 EL 70
L
Sbjct: 502 HL 503
>gi|116517224 coiled-coil domain containing 144B [Homo sapiens]
Length = 725
Score = 32.0 bits (71), Expect = 0.12
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 6 KEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAE--NQVELEEKTRL 63
KE++E ++ + D S Y KSL PK+ N D++ ++V L E
Sbjct: 441 KEDQEFDLQMTKNMNQNSDSGSTNNY---KSLKPKLENLSSLPPDSDRTSEVYLHE---- 493
Query: 64 INQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLM 106
ELQ ++ V+ ++EE L LK EN L + +E M
Sbjct: 494 -----ELQQDMQKFKNEVNTLEEEFLALKKENVQLHKEVEEEM 531
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 52 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 108
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 31.6 bits (70), Expect = 0.15
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 52 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 108
E Q L E+ + + Q+ E Q LE+L + + ++K + LGQ +E L SA
Sbjct: 344 EQQERLREREKRLQQLAEPQSDLEELKHENKSALQLEQQVKELQEKLGQVMETLTSA 400
>gi|31652238 cut-like homeobox 1 isoform c [Homo sapiens]
Length = 676
Score = 31.6 bits (70), Expect = 0.15
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 38 LPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQV 97
L ++++ + A NQ ELE + RL QHTL+ L + +D+++ +N+KL + +
Sbjct: 499 LLSIISSQRERFRARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKF 551
Query: 98 LGQY 101
L Y
Sbjct: 552 LQSY 555
>gi|31652236 cut-like homeobox 1 isoform b [Homo sapiens]
Length = 678
Score = 31.6 bits (70), Expect = 0.15
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 38 LPKMMNADMDAVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQV 97
L ++++ + A NQ ELE + RL QHTL+ L + +D+++ +N+KL + +
Sbjct: 501 LLSIISSQRERFRARNQ-ELEAENRLA------QHTLQALQSELDSLRADNIKLFEKIKF 553
Query: 98 LGQY 101
L Y
Sbjct: 554 LQSY 557
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 31.6 bits (70), Expect = 0.15
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 65 NQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 107
N++LEL+ LE+ V ++E+ LK+ N+ L +++E+L++
Sbjct: 217 NEILELKCNLENKKEEVSRLEEQMNGLKTSNEHLQKHVEDLLT 259
Score = 31.6 bits (70), Expect = 0.15
Identities = 20/108 (18%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 5 RKEEEEDSTFTNISLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQVELEEKTRLI 64
R+ +D + +D++ +R+L+ + + L K++ + + V V L E+ +
Sbjct: 1134 RERMLKDEVSKCVCRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNVSLSEEGKSQ 1193
Query: 65 NQVLE----LQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSA 108
Q+LE ++ E R + + E+L+ + ++L + ++ L +
Sbjct: 1194 EQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDS 1241
Score = 29.6 bits (65), Expect = 0.58
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 55 VELEEKTRLINQVLEL----QHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 110
++++EK + I QV ++ + E+L A+ D V E + + ++Q ++ +
Sbjct: 1422 IDIQEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSAQSSGDHQEQHVSVQEMQELKE 1481
Query: 111 VFQTTDTKSK 120
+TKSK
Sbjct: 1482 TLNQAETKSK 1491
>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
Length = 1710
Score = 31.6 bits (70), Expect = 0.15
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 66 QVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
Q+ +L+H ++DL+A ++ + L L ++NQ+L E L+S +V + + K K
Sbjct: 1398 QINKLKHKIDDLTAELETAGSKCLHLDTKNQILQ---EELLSMKTVQKKCEKLQKNK 1451
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 31.2 bits (69), Expect = 0.20
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 48 AVDAENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSE 94
A++A+N++ +EK +LI+++ E+Q + L + + E + E
Sbjct: 1263 ALEAQNEIHTKEKEKLIDKIQEMQEASDHLKKQFETESEVKCNFRQE 1309
>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
Length = 1684
Score = 30.8 bits (68), Expect = 0.26
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 52 ENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMS 107
+N +LE +L+ Q+ L E LSA V ++ EEN KL SE + L + +E +S
Sbjct: 661 QNDQKLE---KLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLS 713
Score = 28.1 bits (61), Expect = 1.7
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 19/137 (13%)
Query: 1 MDGSRKEEEEDSTFTNI------SLADDIDHSSRILYPRPKSLLPKMMNADMDAVDAENQ 54
M E+ E+ N+ SLA + + + R + +L + ++ + E+
Sbjct: 766 MGSEVSEDSEEKDVVNVLQAVGESLAKINEEKCNLAFQRDEKVLE--LEKEIKCLQEESV 823
Query: 55 VELEE-----------KTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIE 103
V+ EE K L ++ E+Q E L + + +K N K + ENQ L +E
Sbjct: 824 VQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVE 883
Query: 104 NLMSASSVFQTTDTKSK 120
+ S + + K K
Sbjct: 884 EVSQTCSKSEIHNEKEK 900
>gi|224451082 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.26
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 51 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 110
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 111 VFQTTDTKSK 120
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|224451080 cytospin A [Homo sapiens]
Length = 1117
Score = 30.8 bits (68), Expect = 0.26
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 51 AENQVELEEKTRLINQVLELQHTLEDLSARVDAVKEENLKLKSENQVLGQYIENLMSASS 110
+E + E++T + +Q +++ TL L + A++EE +LK+EN++L + L S
Sbjct: 220 SEGDEKSEKETIMAHQPTDVESTLLQLQEQNTAIREELNQLKNENRMLKDRLNAL--GFS 277
Query: 111 VFQTTDTKSK 120
+ Q D K
Sbjct: 278 LEQRLDNSEK 287
>gi|224586773 hypothetical protein LOC643854 [Homo sapiens]
Length = 777
Score = 30.8 bits (68), Expect = 0.26
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 34 PKSLLPKMMNADMDAVDAENQVELE-EKTRLINQVLELQHTLEDLSARVD-------AVK 85
PK L K+++A V ++ LE E+ +I Q+ E+ T E+L+ + +++
Sbjct: 311 PKGALKKLIHAAKLNVSLKS---LEGERNHIIIQLSEVDKTKEELTEHIKNLQTQQASLQ 367
Query: 86 EENLKLKSENQVLGQYIENLMSASSVFQTTDTKSKRK 122
EN+ +SENQ L Q L + +Q + K RK
Sbjct: 368 SENIYFESENQKLQQ---KLKIMTEFYQENEMKLYRK 401
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.317
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,980,082
Number of Sequences: 37866
Number of extensions: 155181
Number of successful extensions: 1208
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 437
length of query: 122
length of database: 18,247,518
effective HSP length: 89
effective length of query: 33
effective length of database: 14,877,444
effective search space: 490955652
effective search space used: 490955652
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.