Guide to the Human Genome
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Name: TH1L Sequence: fasta or formatted (590aa) NCBI GI: 39812492
Description:

TH1-like protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         48           2
 C cysteine            1.9         11           2
 D aspartate           5.4         32           2
 E glutamate           8.5         50           2
 F phenylalanine       4.1         24           1
 G glycine             4.9         29           2
 H histidine           3.4         20           1
 I isoleucine          5.1         30           1
 K lysine              5.1         30           2
 L leucine            11.2         66           2
 M methionine          2.7         16           2
 N asparagine          3.1         18           1
 P proline             4.1         24           3
 Q glutamine           5.6         33           2
 R arginine            3.2         19           2
 S serine              5.9         35           1
 T threonine           6.1         36           2
 V valine              7.6         45           2
 W tryptophan          1.2          7           1
 Y tyrosine            2.9         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TH1-like protein 
PPP1R3A               0.008   protein phosphatase 1, regulatory (inhibitor) subun...
LOC440498             0.007   heat shock factor binding protein 1-like 
SCOC                  0.006   short coiled-coil protein isoform 4 
SCOC                  0.006   short coiled-coil protein isoform 4 
SCOC                  0.006   short coiled-coil protein isoform 4 
ANO8                  0.006   anoctamin 8 
SMYD1                 0.006   SET and MYND domain containing 1 
OGFOD1                0.005   2-oxoglutarate and iron-dependent oxygenase domain c...
RPGR                  0.004   retinitis pigmentosa GTPase regulator isoform C [Hom...
HIVEP2                0.004   human immunodeficiency virus type I enhancer bindin...
FLG                   0.004   filaggrin 
ZACN                  0.004   zinc activated ligand-gated ion channel 
FAM160A1              0.004   hypothetical protein LOC729830 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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