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Search of human proteins with 226493203
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
(481 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226493203 coiled-coil domain containing 76 [Homo sapiens] 987 0.0
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 36 0.068
gi|71143123 U11/U12 snRNP 48K [Homo sapiens] 34 0.26
gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo... 33 0.75
gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo... 33 0.75
gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B [... 33 0.75
gi|55770888 early endosome antigen 1, 162kD [Homo sapiens] 32 1.3
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 32 1.7
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 32 1.7
gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens] 31 2.2
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 31 2.9
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 31 2.9
gi|14550405 postreplication repair protein hRAD18p [Homo sapiens] 30 3.7
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 30 3.7
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 30 3.7
gi|93204867 G protein-coupled receptor 158 [Homo sapiens] 30 4.9
gi|221316642 nuclear distribution gene E homolog 1 [Homo sapiens] 30 6.4
gi|8923110 nuclear distribution gene E homolog 1 [Homo sapiens] 30 6.4
gi|167857798 pleiomorphic adenoma gene 1 isoform b [Homo sapiens] 30 6.4
gi|167857796 pleiomorphic adenoma gene 1 isoform a [Homo sapiens] 30 6.4
gi|167857794 pleiomorphic adenoma gene 1 isoform a [Homo sapiens] 30 6.4
gi|117938307 doublecortin domain containing 2 [Homo sapiens] 30 6.4
gi|114431236 zinc finger protein 462 [Homo sapiens] 30 6.4
gi|30348954 mindbomb homolog 1 [Homo sapiens] 30 6.4
gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens] 29 8.3
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 29 8.3
gi|42476272 zinc finger protein 513 [Homo sapiens] 29 8.3
>gi|226493203 coiled-coil domain containing 76 [Homo sapiens]
Length = 481
Score = 987 bits (2552), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEEDARKRILCP 60
MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEEDARKRILCP
Sbjct: 1 MATSATSPHAPGFPAEGRCGYYVEKKKRFCRMVVAAGKRFCGEHAGAAEEEDARKRILCP 60
Query: 61 LDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLE 120
LDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLE
Sbjct: 61 LDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLE 120
Query: 121 KLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLL 180
KLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLL
Sbjct: 121 KLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLKLL 180
Query: 181 GPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQI 240
GPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQI
Sbjct: 181 GPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRFKVDGKHRKKNSVFERLQI 240
Query: 241 DIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIK 300
DIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIK
Sbjct: 241 DIQHLCLNKIPVLREEKLPVVGIGKHLCGMATDLALRCLVETYAASFEERNEEPLAKRIK 300
Query: 301 NDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVE 360
NDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVE
Sbjct: 301 NDKTEKEIYTLAKEGNEKNVPEKWNPVAGIVIALCCHHRCDWRHYVGKEYFRALGLGAVE 360
Query: 361 FHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLS 420
FHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLS
Sbjct: 361 FHYFQRMSSWATCGMRKTSLETSNSTTKRQDNQNDDSEEHDDGGYRITDDGADCLPGLLS 420
Query: 421 VEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETT 480
VEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETT
Sbjct: 421 VEEKKKIGHLCKLLIDQGRIQYLQQKGFSPALQYYTDPLVSLENVLLTALPNHSSSPETT 480
Query: 481 A 481
A
Sbjct: 481 A 481
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 36.2 bits (82), Expect = 0.068
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 93 DINAGLRDETEIPEQLVPISSLSEE---QLEKLIKKLRKASEGLNSTLKDHIMSHPALHD 149
D+N L++ T + EQLV + L+EE ++ +L KL+ E S H S+ +L D
Sbjct: 1142 DLNKSLKENTFLQEQLVELKMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLED 1201
>gi|71143123 U11/U12 snRNP 48K [Homo sapiens]
Length = 339
Score = 34.3 bits (77), Expect = 0.26
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 24/92 (26%)
Query: 49 EEEDARKRI-LCPLDPKHTVYEDQLAKHLKKCNSR----------EKPKPDFYIQDINAG 97
EEE A + +CP D H + + LAKH+ C R E P+F+ +++
Sbjct: 47 EEEAAEDEVVICPYDSNHHMPKSSLAKHMASCRLRKMGYTKEEEDEMYNPEFFYENVK-- 104
Query: 98 LRDETEIPEQLVPISSLSEEQLEKLIKKLRKA 129
+P +L+++ ++IK+ R A
Sbjct: 105 -----------IPSITLNKDSQFQIIKQARTA 125
>gi|134304846 Rb1-inducible coiled coil protein 1 isoform 2 [Homo
sapiens]
Length = 1591
Score = 32.7 bits (73), Expect = 0.75
Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 47/257 (18%)
Query: 106 EQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLK 165
++L+ + + E +L+ LIK+ + +E LK ++ L + L + N + KH K
Sbjct: 865 KELLSLKNEYEGKLDGLIKETEE-NENKIKKLKGELV---CLEEVLQNKDNEFALVKHEK 920
Query: 166 QQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKV--------------- 210
+ L N ++ KLL +L +I L+D +K+
Sbjct: 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAEL 980
Query: 211 ------------------HFILVEKVTTRFKVDGKHRKKNS--VFERLQIDIQHLCLNKI 250
H EKV T +V + KK + + ++Q + K
Sbjct: 981 QSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKE 1040
Query: 251 PVLREEKLPVVGIGKHLCGMATDLAL--------RCLVETYAASFEERNEEPLAKRIKND 302
L+E KL V + C + +LAL + L+E A +E + L + +N
Sbjct: 1041 KQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENL 1100
Query: 303 KTEKEIYTLAKEGNEKN 319
+TE + N +N
Sbjct: 1101 RTEISKLNQKIQDNNEN 1117
>gi|134304842 Rb1-inducible coiled coil protein 1 isoform 1 [Homo
sapiens]
Length = 1594
Score = 32.7 bits (73), Expect = 0.75
Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 47/257 (18%)
Query: 106 EQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLK 165
++L+ + + E +L+ LIK+ + +E LK ++ L + L + N + KH K
Sbjct: 865 KELLSLKNEYEGKLDGLIKETEE-NENKIKKLKGELV---CLEEVLQNKDNEFALVKHEK 920
Query: 166 QQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKV--------------- 210
+ L N ++ KLL +L +I L+D +K+
Sbjct: 921 EAVICLQNEKDQKLLEMENIMHSQNCEIKELKQSREIVLEDLKKLHVENDEKLQLLRAEL 980
Query: 211 ------------------HFILVEKVTTRFKVDGKHRKKNS--VFERLQIDIQHLCLNKI 250
H EKV T +V + KK + + ++Q + K
Sbjct: 981 QSLEQSHLKELEDTLQVRHIQEFEKVMTDHRVSLEELKKENQQIINQIQESHAEIIQEKE 1040
Query: 251 PVLREEKLPVVGIGKHLCGMATDLAL--------RCLVETYAASFEERNEEPLAKRIKND 302
L+E KL V + C + +LAL + L+E A +E + L + +N
Sbjct: 1041 KQLQELKLKVSDLSDTRCKLEVELALKEAETDEIKILLEESRAQQKETLKSLLEQETENL 1100
Query: 303 KTEKEIYTLAKEGNEKN 319
+TE + N +N
Sbjct: 1101 RTEISKLNQKIQDNNEN 1117
>gi|18765731 synaptosomal-associated protein 23 isoform SNAP23B
[Homo sapiens]
Length = 158
Score = 32.7 bits (73), Expect = 0.75
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 91 IQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDA 150
I+ +AG++ T + EQ ++ + EE L+++ K +R+ + L K + +
Sbjct: 32 IESQDAGIKTITMLDEQKEQLNRI-EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNSI 90
Query: 151 LNDPKNGDSATKHLKQQASILGNIENLKL 179
ND + D ++L Q SILGN++++ L
Sbjct: 91 TNDARE-DEMEENLTQVGSILGNLKDMAL 118
>gi|55770888 early endosome antigen 1, 162kD [Homo sapiens]
Length = 1411
Score = 32.0 bits (71), Expect = 1.3
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 62 DPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEK 121
D K E L K + + EK + D Y + I AG ET + QL + +EQ+ +
Sbjct: 522 DQKIQNLEALLQKSKENISLLEKEREDLYAK-IQAG-EGETAVLNQLQEKNHTLQEQVTQ 579
Query: 122 LIKKLRKASEGLNSTLKDHIMSHPALHDALNDPK 155
L +KL+ SE H + LHD + + K
Sbjct: 580 LTEKLKNQSE-------SHKQAQENLHDQVQEQK 606
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 114 LSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASI--- 170
+ + L+K +++L+ +S+ L K++ D K + K L+QQA I
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDT 850
Query: 171 --------LGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRF 222
+GN+E + E G K + LK+ EK + LV++ T
Sbjct: 851 TLEENNVKIGNLEKEN----KTLSKEIGIYKESC-----VRLKELEKENKELVKRATIDI 901
Query: 223 KV-----------DGKHRKKNSVFERLQIDIQHLCLNKIPVLREEK 257
K K ++ N+ E+L +++ + LNK +L +E+
Sbjct: 902 KTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQ 947
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 31.6 bits (70), Expect = 1.7
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 31/166 (18%)
Query: 114 LSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASI--- 170
+ + L+K +++L+ +S+ L K++ D K + K L+QQA I
Sbjct: 791 MENQTLQKNLEELKISSKRLEQLEKENKSLEQETSQLEKDKKQLEKENKRLRQQAEIKDT 850
Query: 171 --------LGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIALKDAEKVHFILVEKVTTRF 222
+GN+E + E G K + LK+ EK + LV++ T
Sbjct: 851 TLEENNVKIGNLEKEN----KTLSKEIGIYKESC-----VRLKELEKENKELVKRATIDI 901
Query: 223 KV-----------DGKHRKKNSVFERLQIDIQHLCLNKIPVLREEK 257
K K ++ N+ E+L +++ + LNK +L +E+
Sbjct: 902 KTLVTLREDLVSEKLKTQQMNNDLEKLTHELEKIGLNKERLLHDEQ 947
>gi|34303939 exonuclease 3'-5' domain containing 1 [Homo sapiens]
Length = 514
Score = 31.2 bits (69), Expect = 2.2
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 20/118 (16%)
Query: 69 EDQLAKHLKKCNSREKPKPDFYIQDINA--------GLRDETEIPEQLVPISS--LSEEQ 118
E+++ L N R P F QD + L + P+ L P SE+
Sbjct: 348 EEKVKGFLFGKNFRIDKAPSFTSQDFHGDVNLLKEESLNKQATNPQHLPPTEEGETSEDS 407
Query: 119 LEKLIKKLRKASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIEN 176
KLI K SE T K+H M+ PK+ A+ LK++ L +EN
Sbjct: 408 SNKLICTKSKGSEDQRITQKEHFMT----------PKHEFQASLSLKEETEQLLMVEN 455
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 30.8 bits (68), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 271 ATDLALRCLVETYAASFEERNEEPLAKRIKNDKTEKEIYTLAKEGNEKNV 320
AT+ L+ + + EE + +NDK +KEI+TL K+ +K V
Sbjct: 987 ATEKELKDQLSEQTQKYSVSEEEVKKNKQENDKLKKEIFTLQKDLRDKTV 1036
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 30.8 bits (68), Expect = 2.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 271 ATDLALRCLVETYAASFEERNEEPLAKRIKNDKTEKEIYTLAKEGNEKNV 320
AT+ L+ + + EE + +NDK +KEI+TL K+ +K V
Sbjct: 1000 ATEKELKDQLSEQTQKYSVSEEEVKKNKQENDKLKKEIFTLQKDLRDKTV 1049
>gi|14550405 postreplication repair protein hRAD18p [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 3.7
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 14/110 (12%)
Query: 69 EDQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRK 128
E + KHL C SRE+ K + + + + +P+ + + LS+ L+K +K+
Sbjct: 213 ESHINKHLDSCLSREEKK-----ESLRSSVHKRKPLPKTVYNL--LSDRDLKKKLKEHGL 265
Query: 129 ASEGLNSTLKDHIMSHPALHDALNDPKNGDSATKHLKQQASILGNIENLK 178
+ +G L H N H K A I+ IEN++
Sbjct: 266 SIQGNKQQLIKR-------HQEFVHMYNAQCDALHPKSAAEIVQEIENIE 308
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 30.4 bits (67), Expect = 3.7
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 31/246 (12%)
Query: 86 KPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKAS--EGLNSTLKDHIMS 143
K + Y + + + +++ I +L S+E L++ K + K + +G N TL++ +
Sbjct: 435 KVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNIQ 494
Query: 144 HPALHDALNDPKNGDSATKHLKQQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIA 203
+ + + + +H Q + N EN R +E A K + D
Sbjct: 495 LSLEKQQMMEALDQLKSKEHKTQSDMAIVNNEN------NRMSIEMEAMKTNILLIQDEK 548
Query: 204 LKDAEKVHFILVEKVTTRFKVDGKHRKKNSVF-------ERLQIDIQHLCLNKIPVLREE 256
+K H +L EK + G K++ + ERL Q L I +++E
Sbjct: 549 EMLEKKTHQLLKEKSSL-----GNELKESQLEIIQLKEKERLAKTEQETLLQIIETVKDE 603
Query: 257 KLPVVGIGKHLCGMATDLALRCLVETYAAS---FEERNEEPLAKRIKNDKTEKEIY--TL 311
KL + + A R ++E + ++ EE + IKN K+E IY +L
Sbjct: 604 KLNLETT------LQESTAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSL 657
Query: 312 AKEGNE 317
++ G E
Sbjct: 658 SEIGKE 663
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 30.4 bits (67), Expect = 3.7
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 31/246 (12%)
Query: 86 KPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKAS--EGLNSTLKDHIMS 143
K + Y + + + +++ I +L S+E L++ K + K + +G N TL++ +
Sbjct: 472 KVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNIQ 531
Query: 144 HPALHDALNDPKNGDSATKHLKQQASILGNIENLKLLGPRRCFVEFGAGKGKLSHWVDIA 203
+ + + + +H Q + N EN R +E A K + D
Sbjct: 532 LSLEKQQMMEALDQLKSKEHKTQSDMAIVNNEN------NRMSIEMEAMKTNILLIQDEK 585
Query: 204 LKDAEKVHFILVEKVTTRFKVDGKHRKKNSVF-------ERLQIDIQHLCLNKIPVLREE 256
+K H +L EK + G K++ + ERL Q L I +++E
Sbjct: 586 EMLEKKTHQLLKEKSSL-----GNELKESQLEIIQLKEKERLAKTEQETLLQIIETVKDE 640
Query: 257 KLPVVGIGKHLCGMATDLALRCLVETYAAS---FEERNEEPLAKRIKNDKTEKEIY--TL 311
KL + + A R ++E + ++ EE + IKN K+E IY +L
Sbjct: 641 KLNLETT------LQESTAARQIMEREIENIQTYQSTAEENFLQEIKNAKSEASIYKNSL 694
Query: 312 AKEGNE 317
++ G E
Sbjct: 695 SEIGKE 700
>gi|93204867 G protein-coupled receptor 158 [Homo sapiens]
Length = 1215
Score = 30.0 bits (66), Expect = 4.9
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 98 LRDETEIPEQLVPISSLSEEQLE----------KLIKKLRKASEGLNSTLKDHIMSHPAL 147
+RD+TE L P S EE E KL +KL++ SE ++ + +
Sbjct: 824 VRDQTEESSSL-PTESQEEETTENSTLESLSGKKLTQKLKEDSEAESTESVPLVCKSASA 882
Query: 148 HDALNDPKNGDSATKHLKQQASILGNIENLKLLG 181
H+ ++ K G T L++ S++ + + K LG
Sbjct: 883 HNLSSEKKTGHPRTSMLQKSLSVIASAKE-KTLG 915
>gi|221316642 nuclear distribution gene E homolog 1 [Homo sapiens]
Length = 335
Score = 29.6 bits (65), Expect = 6.4
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 70 DQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKA 129
D L+++ + E K F +Q + G R + + + L ++ ++QL+K I++L +A
Sbjct: 63 DLLSENNRLRMELETIKEKFEVQH-SEGYRQISALEDDLAQTKAI-KDQLQKYIRELEQA 120
Query: 130 SEGLNSTLKDHIMSHPALHDALNDP-KNGDSATKHLKQQASILGNIENLK 178
++ L + IMS LN + L ++ ++L +++ LK
Sbjct: 121 NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLK 170
>gi|8923110 nuclear distribution gene E homolog 1 [Homo sapiens]
Length = 335
Score = 29.6 bits (65), Expect = 6.4
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 70 DQLAKHLKKCNSREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKA 129
D L+++ + E K F +Q + G R + + + L ++ ++QL+K I++L +A
Sbjct: 63 DLLSENNRLRMELETIKEKFEVQH-SEGYRQISALEDDLAQTKAI-KDQLQKYIRELEQA 120
Query: 130 SEGLNSTLKDHIMSHPALHDALNDP-KNGDSATKHLKQQASILGNIENLK 178
++ L + IMS LN + L ++ ++L +++ LK
Sbjct: 121 NDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKENLLESVQRLK 170
>gi|167857798 pleiomorphic adenoma gene 1 isoform b [Homo sapiens]
Length = 418
Score = 29.6 bits (65), Expect = 6.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 54 RKRILCPLDPKHTVYEDQLAKHLKKCNSRE----KPKPDFYIQDINAGLRDETEIPEQLV 109
RK LC + +D L +H+KK +++E K +P ++ + I ++L+
Sbjct: 128 RKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNV--SVPIKDELL 185
Query: 110 PISSLSEEQL 119
P+ SL +L
Sbjct: 186 PVMSLPSSEL 195
>gi|167857796 pleiomorphic adenoma gene 1 isoform a [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 6.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 54 RKRILCPLDPKHTVYEDQLAKHLKKCNSRE----KPKPDFYIQDINAGLRDETEIPEQLV 109
RK LC + +D L +H+KK +++E K +P ++ + I ++L+
Sbjct: 210 RKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNV--SVPIKDELL 267
Query: 110 PISSLSEEQL 119
P+ SL +L
Sbjct: 268 PVMSLPSSEL 277
>gi|167857794 pleiomorphic adenoma gene 1 isoform a [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 6.4
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 54 RKRILCPLDPKHTVYEDQLAKHLKKCNSRE----KPKPDFYIQDINAGLRDETEIPEQLV 109
RK LC + +D L +H+KK +++E K +P ++ + I ++L+
Sbjct: 210 RKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPVDFLDPFTCNV--SVPIKDELL 267
Query: 110 PISSLSEEQL 119
P+ SL +L
Sbjct: 268 PVMSLPSSEL 277
>gi|117938307 doublecortin domain containing 2 [Homo sapiens]
Length = 476
Score = 29.6 bits (65), Expect = 6.4
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 9/82 (10%)
Query: 43 EHAGAAE-EEDARKRILCPLDPKHTVYEDQLAKHLKKCNSREKPKPDFYIQDINAGLRDE 101
E GAAE +ED ++ P+D + D+ + +K N + K DF +N L +E
Sbjct: 320 ETRGAAEVQEDEDTQVEVPVDQRPAEIVDE-EEDGEKANKDAEQKEDF--SGMNGDLEEE 376
Query: 102 -----TEIPEQLVPISSLSEEQ 118
T+ PEQ+ I SE+Q
Sbjct: 377 GGREATDAPEQVEEILDHSEQQ 398
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 29.6 bits (65), Expect = 6.4
Identities = 23/101 (22%), Positives = 50/101 (49%), Gaps = 14/101 (13%)
Query: 69 EDQLAKHLKKCNSREKPKPDF------YIQDINAGLRDETEIPEQLVPISSLSEEQLEKL 122
++ L +H++K N + K + +++++ LRDE ++ + ++ +QLE++
Sbjct: 2312 DESLQQHIEKHNELKPYKCQLCYYETKHTEELDSHLRDEHKVSRNFELVGRVNLDQLEQM 2371
Query: 123 IKKLRKAS-------EGLNSTLKDHIMSHPALHD-ALNDPK 155
+K+ +S E +NS +D + + H ALN K
Sbjct: 2372 KEKMESSSSDDEDKEEEMNSKAEDRELMRFSDHGAALNTEK 2412
>gi|30348954 mindbomb homolog 1 [Homo sapiens]
Length = 1006
Score = 29.6 bits (65), Expect = 6.4
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 111 ISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPA------LHDALNDPK---NGDSAT 161
IS+ S E+L +L+KKL + E + L + ++ A + D L P NG A
Sbjct: 407 ISNASGERLSQLLKKLFETQE--SGDLNEELVKAAANGDVAKVEDLLKRPDVDVNGQCAG 464
Query: 162 KHLKQQASILGNIENLKLLGPRRCFVE 188
Q AS G+++ LKLL + VE
Sbjct: 465 HTAMQAASQNGHVDILKLLLKQNVDVE 491
>gi|229608967 spermatogenic leucine zipper 1 [Homo sapiens]
Length = 430
Score = 29.3 bits (64), Expect = 8.3
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 6/93 (6%)
Query: 81 SREKPKPDFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDH 140
S+EK K +Q+ +R+ E Q S +L KLIK +K+ + ++ TL ++
Sbjct: 226 SQEKAKNRLNVQEETMKIRNNMEQLLQEAEHWSKQHTELSKLIKSYQKSQKDISETLGNN 285
Query: 141 IMSHPALHDALNDPKNGDSATKHLKQQASILGN 173
+ P N SA L++Q L +
Sbjct: 286 GVGFQ------TQPNNEVSAKHELEEQVKKLSH 312
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 29.3 bits (64), Expect = 8.3
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 88 DFYIQDINAGLRDETEIPEQLVPISSLSEEQLEKLIKKLRKASEGLNSTLKDHIMSHPAL 147
D + + N L+ E+ E+ + S +E+L+ + KL E + ST I L
Sbjct: 410 DNSLAEDNLKLKMRIEVLEKEKSLLSQEKEELQMSLLKLNNEYEVIKSTATRDISLDSEL 469
Query: 148 HD-ALNDPKNGDSATKHLKQQASILGNIENL 177
HD LN + + ++ +++ IE L
Sbjct: 470 HDLRLNLEAKEQELNQSISEKETLIAEIEEL 500
>gi|42476272 zinc finger protein 513 [Homo sapiens]
Length = 541
Score = 29.3 bits (64), Expect = 8.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 19 CGYYVEKKKRFCRMVVAAGKRFCGEHAGAAE---EEDARKRILCPLDPKHTVYEDQLAKH 75
CG +E+ + G+ GE G A + + K C L P T Y + LA+H
Sbjct: 319 CGQELEEGEGSRLGAAMCGRCMRGEAGGGASGGPQGPSDKGFACSLCPFATHYPNHLARH 378
Query: 76 LKKCNSREKP 85
+ K +S EKP
Sbjct: 379 M-KTHSGEKP 387
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,704,903
Number of Sequences: 37866
Number of extensions: 909916
Number of successful extensions: 3084
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3072
Number of HSP's gapped (non-prelim): 38
length of query: 481
length of database: 18,247,518
effective HSP length: 106
effective length of query: 375
effective length of database: 14,233,722
effective search space: 5337645750
effective search space used: 5337645750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.