Search of human proteins with 226246630

Search of human proteins with 226246630

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|226246630 tryptophan rich basic protein isoform 2 [Homo
sapiens]
         (140 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|226246630 tryptophan rich basic protein isoform 2 [Homo sapiens]   278   1e-75
gi|21536428 tryptophan rich basic protein isoform 1 [Homo sapiens]    278   1e-75
gi|82830440 Fanconi anemia, complementation group I isoform 2 [H...    33   0.100
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa...    32   0.17 
gi|139948432 adlican [Homo sapiens]                                    31   0.38 
gi|119943086 Tax1 (human T-cell leukemia virus type I) binding p...    30   0.49 
gi|21361682 Tax1 (human T-cell leukemia virus type I) binding pr...    30   0.49 
gi|54792740 transmembrane and coiled-coil domain family 2 [Homo ...    30   0.84 
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    30   0.84 
gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]                     29   1.1  
gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens]                    28   1.9  
gi|4504935 keratin 85 [Homo sapiens]                                   28   1.9  
gi|149363685 hypothetical protein LOC23379 [Homo sapiens]              28   2.5  
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    28   2.5  
gi|154354990 ankyrin repeat domain 26 [Homo sapiens]                   28   2.5  
gi|108936950 coiled-coil domain containing 25 [Homo sapiens]           28   2.5  
gi|115648142 centrosomal protein 164kDa [Homo sapiens]                 28   3.2  
gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]     28   3.2  
gi|157502225 Janus kinase and microtubule interacting protein 3 ...    27   5.5  
gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]          27   5.5  
gi|10863975 islet-specific glucose-6-phosphatase-related protein...    27   5.5  
gi|30794488 kinesin family member 27 [Homo sapiens]                    27   5.5  
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr...    27   7.1  
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr...    27   7.1  
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]     27   7.1  
gi|42789729 lymphoid-restricted membrane protein [Homo sapiens]        27   7.1  
gi|40538794 coiled-coil domain containing 21 [Homo sapiens]            27   7.1  
gi|7662158 F-box protein 28 isoform a [Homo sapiens]                   26   9.3  
gi|71061468 centromere protein E [Homo sapiens]                        26   9.3  
gi|52219202 olfactory receptor, family 1, subfamily B, member 1 ...    26   9.3  

>gi|226246630 tryptophan rich basic protein isoform 2 [Homo sapiens]
          Length = 140

 Score =  278 bits (710), Expect = 1e-75
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
           MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART
Sbjct: 1   MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60

Query: 61  AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120
           AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG
Sbjct: 61  AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120

Query: 121 ITCWILVCNKVVAIVLHPFS 140
           ITCWILVCNKVVAIVLHPFS
Sbjct: 121 ITCWILVCNKVVAIVLHPFS 140


>gi|21536428 tryptophan rich basic protein isoform 1 [Homo sapiens]
          Length = 174

 Score =  278 bits (710), Expect = 1e-75
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
           MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART
Sbjct: 35  MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 94

Query: 61  AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 120
           AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG
Sbjct: 95  AQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVG 154

Query: 121 ITCWILVCNKVVAIVLHPFS 140
           ITCWILVCNKVVAIVLHPFS
Sbjct: 155 ITCWILVCNKVVAIVLHPFS 174


>gi|82830440 Fanconi anemia, complementation group I isoform 2 [Homo
           sapiens]
          Length = 1268

 Score = 32.7 bits (73), Expect = 0.100
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 6/71 (8%)

Query: 30  NMMDEFARYARLERKINKMTDKLKTHVKARTAQ-LAKIKWVISVAFYVLQAALMISLIWK 88
           +++  F  Y +L   +N+   K KT +  +T+  L  +K+V S     L  AL   L+W+
Sbjct: 770 DILSLFMCYKKLSDILNEKAGKAKTKMANKTSDSLLSMKFVSS-----LLTALFRVLLWR 824

Query: 89  YYSVPVAVVPS 99
           Y S+P +V  S
Sbjct: 825 YTSIPTSVEES 835


>gi|24797099 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 1 [Homo sapiens]
          Length = 1273

 Score = 32.0 bits (71), Expect = 0.17
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 7/74 (9%)

Query: 37  RYARLERKINKMTDKLKTHVKARTAQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAV 96
           RYA +ER + ++TD     +      L   + V + A  VL   + I      Y  P++ 
Sbjct: 649 RYASVERLLERLTDLRFLSIDFLNTFLHSYR-VFTTAIVVLDKLITI------YKKPISA 701

Query: 97  VPSKWITPLDRLVA 110
           +P++W+  L+ L A
Sbjct: 702 IPARWLRSLELLFA 715


>gi|139948432 adlican [Homo sapiens]
          Length = 2828

 Score = 30.8 bits (68), Expect = 0.38
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 2   SRVLQKDAEQE----SQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVK 57
           SR ++++ EQE    SQ+  E   + Q   ++NM DE      L   I K  D  K H+ 
Sbjct: 289 SRSIEEEQEQEEDGGSQLILEKFQLPQWSISLNMTDEHGNMVNLVCDIKKPMDVYKIHLN 348

Query: 58  ARTAQLAKIKWVISVAFYVLQAALMISLIWK---YYS-VPV 94
                   I   +++ F           +WK   YYS VPV
Sbjct: 349 QTDPPDIDINATVALDFECPMTRENYEKLWKLIAYYSEVPV 389


>gi|119943086 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform b [Homo sapiens]
          Length = 747

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 5   LQKDAEQ----ESQMRAEIQDMKQELSTV--NMMDEFARYARLERKINKMTDK 51
           ++KD ++    E ++R E++D+K  L     +  ++F    RL+++INK++D+
Sbjct: 417 MKKDQDKTDTLEHELRREVEDLKLRLQMAADHYKEKFKECQRLQKQINKLSDQ 469


>gi|21361682 Tax1 (human T-cell leukemia virus type I) binding
           protein 1 isoform a [Homo sapiens]
          Length = 789

 Score = 30.4 bits (67), Expect = 0.49
 Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 5   LQKDAEQ----ESQMRAEIQDMKQELSTV--NMMDEFARYARLERKINKMTDK 51
           ++KD ++    E ++R E++D+K  L     +  ++F    RL+++INK++D+
Sbjct: 417 MKKDQDKTDTLEHELRREVEDLKLRLQMAADHYKEKFKECQRLQKQINKLSDQ 469


>gi|54792740 transmembrane and coiled-coil domain family 2 [Homo
           sapiens]
          Length = 709

 Score = 29.6 bits (65), Expect = 0.84
 Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 5   LQKDAEQESQMRAEIQDMKQELS------TVNMMDEFARYARLERKINKMTDKLKTHVKA 58
           L++  E +S +   ++D+K +L       T  + +E  RY RLE ++N +T+  +  +  
Sbjct: 523 LREIKEGQSHLEDSMEDLKTQLQRDYTYMTQCLQEERYRYERLEEQLNDLTELHQNEMTN 582

Query: 59  RTAQLAKIKWVISVAFY 75
              +LA ++  ++   Y
Sbjct: 583 LKQELASMEEKVAYQSY 599


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 29.6 bits (65), Expect = 0.84
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 10/79 (12%)

Query: 4    VLQKDAEQESQMRAEIQ----DMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKAR 59
            VLQ+  E++ QM+  +Q     +++E   VN + E    A++E   N      + H KA 
Sbjct: 1159 VLQRKEEEDRQMKHLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHN------RRHFKAA 1212

Query: 60   TAQLAKIKWVISVAFYVLQ 78
            + +L+++K  +    +++Q
Sbjct: 1213 SLELSEVKKELQAKEHLVQ 1231


>gi|24119203 tropomyosin 3 isoform 2 [Homo sapiens]
          Length = 248

 Score = 29.3 bits (64), Expect = 1.1
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1   MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFAR--YARLERKINKMTDKLK 53
           +S   +K +++E +   EI+ +  +L       EFA    A+LE+ I+ + DKLK
Sbjct: 171 LSAAEEKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLK 225


>gi|114155144 tropomyosin 3 isoform 4 [Homo sapiens]
          Length = 248

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 6   QKDAEQESQMRAEIQDMKQELSTVNMMDEFAR--YARLERKINKMTDKLK 53
           +K +++E +   EI+ +  +L       EFA    A+LE+ I+ + DKLK
Sbjct: 176 EKYSQKEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLK 225


>gi|4504935 keratin 85 [Homo sapiens]
          Length = 507

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 9   AEQESQMRAEIQDMKQELSTVNMMDEFARYARLE-RKINKMTDKLKTHVKARTAQLAKIK 67
           AE ES  R++ ++MK   +TV    E  R  + E  ++N+M  +L   ++    Q AK++
Sbjct: 308 AEAESWYRSKCEEMK---ATVIRHGETLRRTKEEINELNRMIQRLTAEIENAKCQRAKLE 364

Query: 68  WVISVAFYVLQAAL 81
             ++ A    +AAL
Sbjct: 365 AAVAEAEQQGEAAL 378


>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
          Length = 2266

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 5   LQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKM-TDKLKTHVKARTAQL 63
           LQK  E+   ++AE+++ K  L      D    YAR++ +  K    K K   K +  Q 
Sbjct: 85  LQKCQEELGSLKAELEEKKSSLKL--YQDTHQEYARVKEECLKSDAQKKKLEAKVKKLQE 142

Query: 64  AKIK 67
           A +K
Sbjct: 143 AAVK 146


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 1    MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
            M  +LQ   E+E   R E + +K+ELS  +   +  + A L+RK     D LK  +    
Sbjct: 1199 MKHLLQLKEEEEETNRQETEKLKEELSASSARTQNLK-ADLQRKEEDYAD-LKEKLTDAK 1256

Query: 61   AQLAKIKWVISV 72
             Q+ +++  +SV
Sbjct: 1257 KQIKQVQKEVSV 1268


>gi|154354990 ankyrin repeat domain 26 [Homo sapiens]
          Length = 1710

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 9    AEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAK 65
            A  +SQM   I+D++ ELS +    E      LE+      ++LK   K+ +++L K
Sbjct: 1520 ASMKSQMELRIKDLESELSKIKTSQEDFNKTELEKYKQLYLEELKVR-KSLSSKLTK 1575


>gi|108936950 coiled-coil domain containing 25 [Homo sapiens]
          Length = 208

 Score = 28.1 bits (61), Expect = 2.5
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 7   KDAEQESQMRAEIQDM----KQELSTVNMMDEFARYARLERKINKMTDK 51
           +D E+ ++ +A+IQ+M    K+E+     MDE   Y+ L +  N  +++
Sbjct: 151 RDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199


>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
          Length = 1460

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 2   SRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKA 58
           ++V       E Q+RAE +   Q+L       + A  A LE+K  +M ++LK  ++A
Sbjct: 675 AQVQSSTQADEDQIRAEQEASLQKLREELESQQKAERASLEQKNRQMLEQLKEEIEA 731


>gi|5031937 calcium binding and coiled-coil domain 2 [Homo sapiens]
          Length = 446

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 10  EQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHV 56
           +Q S M+AE+Q  ++EL T+  +++     +LE K+ +  D  +T +
Sbjct: 168 KQNSDMQAELQKKQEELETLQSINK-----KLELKVKEQKDYWETEL 209


>gi|157502225 Janus kinase and microtubule interacting protein 3
          [Homo sapiens]
          Length = 844

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 15/64 (23%), Positives = 37/64 (57%), Gaps = 2/64 (3%)

Query: 2  SRVLQKDAEQESQMRAEIQDMKQELSTVN--MMDEFARYARLERKINKMTDKLKTHVKAR 59
          SR     AE  + ++A  +D++ +L+ +   +  E ++ +++ER+ N+   +++ H + +
Sbjct: 8  SRAKGDKAEALAALQAANEDLRAKLTDIQIELQQEKSKVSKVEREKNQELRQVREHEQHK 67

Query: 60 TAQL 63
          TA L
Sbjct: 68 TAVL 71


>gi|27883842 BMI1 polycomb ring finger oncogene [Homo sapiens]
          Length = 326

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 9   AEQESQMRAEIQDMKQELST----VNMMDEFARYARLERKINKMTDKLKTHV 56
           A   ++ R E+ D  + + T    +++  EF    RL+RK+NK  +K K  V
Sbjct: 107 ANGSNEDRGEVADEDKRIITDDEIISLSIEFFDQNRLDRKVNKDKEKSKEEV 158


>gi|10863975 islet-specific glucose-6-phosphatase-related protein
           isoform 1 [Homo sapiens]
          Length = 355

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 68  WVISVAFYVLQAALMISLIWKYYSVPVAVVPSKWITPLDRLVAFPTRVAG 117
           ++ +V FY+L   L I L+W   SVP+A    KW    D +    T  AG
Sbjct: 215 FLFAVGFYLLLRVLNIDLLW---SVPIA---KKWCANPDWIHIDTTPFAG 258


>gi|30794488 kinesin family member 27 [Homo sapiens]
          Length = 1401

 Score = 26.9 bits (58), Expect = 5.5
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 5   LQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVK 57
           L+ DAEQ      E Q   QEL   ++ D  A   +L+++  K  D  K  V+
Sbjct: 764 LEHDAEQAKVELIETQKQLQELENKDLSD-VAMKVKLQKEFRKKMDAAKLRVQ 815


>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
            repeats isoform 2 [Homo sapiens]
          Length = 1403

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 12/63 (19%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 5    LQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLA 64
            ++K+ ++  +++ EI  ++++L    ++ E +    +ER +++ TD+L   +K  + +  
Sbjct: 1010 VKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSH--EMERALSRKTDELNKQLKDLSQKYT 1067

Query: 65   KIK 67
            ++K
Sbjct: 1068 EVK 1070


>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
            repeats isoform 1 [Homo sapiens]
          Length = 1416

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 12/63 (19%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 5    LQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLA 64
            ++K+ ++  +++ EI  ++++L    ++ E +    +ER +++ TD+L   +K  + +  
Sbjct: 1023 VKKNKQENDKLKKEIFTLQKDLRDKTVLIEKSH--EMERALSRKTDELNKQLKDLSQKYT 1080

Query: 65   KIK 67
            ++K
Sbjct: 1081 EVK 1083


>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
          Length = 2230

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 11   QESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAK 65
            Q   M+AE++  K+EL  VN+          E ++  + D+L++   A+ A+L +
Sbjct: 1593 QVYSMKAELETKKKELEHVNL-----SVKSKEEELKALEDRLESESAAKLAELKR 1642


>gi|42789729 lymphoid-restricted membrane protein [Homo sapiens]
          Length = 499

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 54  THVKARTAQLAKIKWVISVAFYVLQAALMISLIWKYYSVPVAVVPSK 100
           T++K+   +  K  W +S+AF VL AALM  L  + +   V   P++
Sbjct: 428 TNLKSSIRKANKALW-LSIAFIVLFAALMSFLTGQLFQKSVDAAPTQ 473


>gi|40538794 coiled-coil domain containing 21 [Homo sapiens]
          Length = 762

 Score = 26.6 bits (57), Expect = 7.1
 Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 1   MSRVLQKDAEQESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKART 60
           + ++++K  ++  Q+R+++Q ++QE++      +  R     R  +    +L+T VK  +
Sbjct: 579 LQKIVEKQQQKMDQLRSQVQSLEQEVAQEEGTSQALREEAQRR--DSALQQLRTAVKELS 636

Query: 61  AQ 62
            Q
Sbjct: 637 VQ 638


>gi|7662158 F-box protein 28 isoform a [Homo sapiens]
          Length = 368

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 11  QESQMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTD 50
           QE Q + + QD K    T  + ++ AR A LERK+ ++ +
Sbjct: 290 QEQQKQLQDQDQKLLEQTQIIGEQNARLAELERKLREVME 329


>gi|71061468 centromere protein E [Homo sapiens]
          Length = 2701

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 14  QMRAEIQDMKQELSTVNMMDEFARYARLERKINKMTDKLKTHVKARTAQLAK 65
           Q+R E ++M+ +L   N +DEF     LERK  K  +    H  +    L K
Sbjct: 516 QLRTEKEEMELKLKEKNDLDEF---EALERKTKKDQEMQLIHEISNLKNLVK 564


>gi|52219202 olfactory receptor, family 1, subfamily B, member 1
           [Homo sapiens]
          Length = 318

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 59  RTAQLAKIKWVISVAFYVLQAALMISLIW 87
           R A L  + WV+S+   +L+  L++ L W
Sbjct: 142 RCACLLALSWVVSILHTMLRVGLVLPLCW 170


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,335,866
Number of Sequences: 37866
Number of extensions: 144863
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 801
Number of HSP's gapped (non-prelim): 39
length of query: 140
length of database: 18,247,518
effective HSP length: 92
effective length of query: 48
effective length of database: 14,763,846
effective search space: 708664608
effective search space used: 708664608
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.