Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RSPH10B Sequence: fasta or formatted (870aa) NCBI GI: 157502187
Description:

radial spoke head 10 homolog B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         40           2
 C cysteine            1.5         13           1
 D aspartate           5.1         44           2
 E glutamate           8.6         75           3
 F phenylalanine       5.1         44           2
 G glycine             6.8         59           2
 H histidine           3.2         28           3
 I isoleucine          4.8         42           1
 K lysine              7.9         69           5
 L leucine             7.7         67           3
 M methionine          3.3         29           1
 N asparagine          5.2         45           2
 P proline             3.4         30           2
 Q glutamine           3.1         27           2
 R arginine            5.6         49           2
 S serine              8.2         71           4
 T threonine           4.9         43           2
 V valine              4.6         40           2
 W tryptophan          1.7         15           1
 Y tyrosine            4.6         40           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   radial spoke head 10 homolog B 
RSPH10B2              0.998   radial spoke head 10 homolog B2 
MORN1                 0.044   MORN repeat containing 1 
MORN3                 0.042   MORN repeat containing 3 
ALS2                  0.041   alsin isoform 1 
RSPH1                 0.038   testis-specific gene A2 
ALS2CL                0.034   ALS2 C-terminal like isoform 1 
JPH1                  0.032   junctophilin 1 
JPH3                  0.030   junctophilin 3 
JPH2                  0.028   junctophilin 2 isoform 1 
JPH4                  0.025   junctophilin 4 
JPH4                  0.025   junctophilin 4 
MORN4                 0.022   MORN repeat containing 4 
MORN4                 0.022   MORN repeat containing 4 
JPH2                  0.021   junctophilin 2 isoform 2 
ANKMY1                0.018   ankyrin repeat and MYND domain containing 1 isoform ...
SETD7                 0.017   SET domain-containing protein 7 
ANKMY1                0.014   ankyrin repeat and MYND domain containing 1 isoform ...
MORN2                 0.012   MORN repeat containing 2 
MORN5                 0.010   MORN repeat containing 5 
MYO5C                 0.007   myosin VC 
C11orf57              0.006   hypothetical protein LOC55216 isoform b 
C11orf57              0.006   hypothetical protein LOC55216 isoform a 
C11orf57              0.006   hypothetical protein LOC55216 isoform a 
WDR60                 0.005   WD repeat domain 60 
MLL                   0.005   myeloid/lymphoid or mixed-lineage leukemia protein [...
SR140                 0.005   U2-associated SR140 protein 
SAFB                  0.004   scaffold attachment factor B 
NAV1                  0.004   neuron navigator 1 
KLHL14                0.004   kelch-like 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press