Guide to the Human Genome
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Name: RSPH1 Sequence: fasta or formatted (309aa) NCBI GI: 18254456
Description:

testis-specific gene A2

Referenced in:

Spindle, M phase, and Meiosis
Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         15           1
 C cysteine            0.3          1           1
 D aspartate           6.1         19           1
 E glutamate          15.5         48           7
 F phenylalanine       2.6          8           1
 G glycine            13.9         43           2
 H histidine           3.2         10           1
 I isoleucine          2.6          8           1
 K lysine              4.2         13           2
 L leucine             5.5         17           2
 M methionine          1.6          5           1
 N asparagine          4.5         14           2
 P proline             3.9         12           1
 Q glutamine           4.5         14           2
 R arginine            6.1         19           1
 S serine              3.2         10           1
 T threonine           5.5         17           1
 V valine              3.6         11           2
 W tryptophan          1.6          5           1
 Y tyrosine            6.5         20           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testis-specific gene A2 
RSPH10B2              0.114   radial spoke head 10 homolog B2 
RSPH10B               0.114   radial spoke head 10 homolog B 
MORN1                 0.106   MORN repeat containing 1 
MORN3                 0.101   MORN repeat containing 3 
ALS2                  0.092   alsin isoform 1 
JPH3                  0.082   junctophilin 3 
JPH2                  0.074   junctophilin 2 isoform 1 
ALS2CL                0.074   ALS2 C-terminal like isoform 1 
JPH1                  0.073   junctophilin 1 
JPH2                  0.070   junctophilin 2 isoform 2 
MORN4                 0.065   MORN repeat containing 4 
MORN4                 0.065   MORN repeat containing 4 
JPH4                  0.063   junctophilin 4 
JPH4                  0.063   junctophilin 4 
ANKMY1                0.063   ankyrin repeat and MYND domain containing 1 isoform ...
ANKMY1                0.055   ankyrin repeat and MYND domain containing 1 isoform ...
SETD7                 0.049   SET domain-containing protein 7 
RPGR                  0.047   retinitis pigmentosa GTPase regulator isoform C [Hom...
MORN2                 0.036   MORN repeat containing 2 
MORN5                 0.035   MORN repeat containing 5 
WDR87                 0.024   NYD-SP11 protein 
GON4L                 0.017   gon-4-like isoform a 
MYST4                 0.017   MYST histone acetyltransferase (monocytic leukemia)...
PCGF6                 0.017   polycomb group ring finger 6 isoform a 
PCGF6                 0.017   polycomb group ring finger 6 isoform b 
ZFHX3                 0.016   AT-binding transcription factor 1 
LOC647020             0.016   PREDICTED: similar to acidic (leucine-rich) nuclear...
LOC647020             0.016   PREDICTED: similar to acidic (leucine-rich) nuclear...
MYT1L                 0.016   myelin transcription factor 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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