Guide to the Human Genome
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Search of human proteins with 225579097

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
         (320 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s...   645   0.0  
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa...   565   e-161
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s...   355   4e-98
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa...   354   5e-98
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s...   349   2e-96
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s...   347   1e-95
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]          313   1e-85
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]          290   2e-78
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ...   147   9e-36
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ...   144   1e-34
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2...   144   1e-34
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4...   143   2e-34
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ...   134   1e-31
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [...   129   3e-30
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ...   129   3e-30
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila...    59   8e-09
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]                58   1e-08
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]               55   8e-08
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]               55   8e-08
gi|38201714 ELAV-like 1 [Homo sapiens]                                 53   4e-07
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]                      52   5e-07
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]                      52   5e-07
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]                      52   5e-07
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]                      52   5e-07
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]                      52   5e-07
gi|4506447 RNA binding motif, single stranded interacting protei...    52   7e-07
gi|8400718 RNA binding motif, single stranded interacting protei...    50   2e-06
gi|188219593 TIA1 protein isoform 1 [Homo sapiens]                     49   6e-06
gi|51317355 RNA binding motif, single stranded interacting prote...    49   8e-06
gi|51317351 RNA binding motif, single stranded interacting prote...    49   8e-06

>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 320

 Score =  645 bits (1663), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
           MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK
Sbjct: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
           GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT
Sbjct: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120

Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
           PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA
Sbjct: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180

Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240
           PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE
Sbjct: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240

Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300
           TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF
Sbjct: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300

Query: 301 LQGVYGSSYQPEQVFRLREL 320
           LQGVYGSSYQPEQVFRLREL
Sbjct: 301 LQGVYGSSYQPEQVFRLREL 320


>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 485

 Score =  565 bits (1456), Expect = e-161
 Identities = 282/282 (100%), Positives = 282/282 (100%)

Query: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
           MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK
Sbjct: 115 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
           GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT
Sbjct: 175 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 234

Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
           PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA
Sbjct: 235 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 294

Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240
           PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE
Sbjct: 295 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 354

Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282
           TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG
Sbjct: 355 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 396



 Score = 36.6 bits (83), Expect = 0.031
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 13  ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHT 71
           +  G     LF+  L ++  + ++ ++F PFG +I     +      SK   FV F +  
Sbjct: 393 QREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPA 452

Query: 72  EAQAAIHALHGSQ 84
            AQAAI A++G Q
Sbjct: 453 SAQAAIQAMNGFQ 465


>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
           sapiens]
          Length = 448

 Score =  355 bits (910), Expect = 4e-98
 Identities = 184/287 (64%), Positives = 222/287 (77%), Gaps = 8/287 (2%)

Query: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
           M RPIQVKPADSESRG  DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+LRGPDG+SK
Sbjct: 124 MNRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 182

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
           GCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM GQ+G+  
Sbjct: 183 GCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFN 242

Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATP 178
           P + +PF  Y AYAQALMQQQ  ++++   G YL+P  AF+   +QQ+ A+++NGL A P
Sbjct: 243 P-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAP 301

Query: 179 IAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPT 237
           + P SG  +PP +   AVP + +PI  NGF G+ P   G PA E V+ANG+ PYPAQSPT
Sbjct: 302 MTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPT 361

Query: 238 VAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
            A+ L  A++GVQQY   A YP AA   I+ + PQPPP++ QQQREG
Sbjct: 362 AADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 407


>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
           sapiens]
          Length = 486

 Score =  354 bits (909), Expect = 5e-98
 Identities = 185/296 (62%), Positives = 224/296 (75%), Gaps = 16/296 (5%)

Query: 1   MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51
           M RPIQVKPADSESRGG         +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183

Query: 52  LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111
           LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ
Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243

Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAV 169
           M GQ+G+  P + +PF  Y AYAQALMQQQ  ++++   G YL+P  AF+   +QQ+ A+
Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 302

Query: 170 SLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGL 228
           ++NGL A P+ P SG  +PP +   AVP + +PI  NGF G+ P   G PA E V+ANG+
Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI 362

Query: 229 VPYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
            PYPAQSPT A+ L  A++GVQQY   A YP AA   I+ + PQPPP++ QQQREG
Sbjct: 363 HPYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 417


>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
           sapiens]
          Length = 485

 Score =  349 bits (896), Expect = 2e-96
 Identities = 183/295 (62%), Positives = 221/295 (74%), Gaps = 15/295 (5%)

Query: 1   MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51
           M RPIQVKPADSESRGG         +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183

Query: 52  LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111
           LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ
Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243

Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVS 170
           M GQ+G+  P + +PF  Y AYAQA+ QQ   + S + G YL+P  AF+   +QQ+ A++
Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALN 302

Query: 171 LNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLV 229
           +NGL A P+ P SG  +PP +   AVP + +PI  NGF G+ P   G PA E V+ANG+ 
Sbjct: 303 MNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIH 362

Query: 230 PYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
           PYPAQSPT A+ L  A++GVQQY   A YP AA   I+ + PQPPP++ QQQREG
Sbjct: 363 PYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 416


>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
           sapiens]
          Length = 484

 Score =  347 bits (889), Expect = 1e-95
 Identities = 182/294 (61%), Positives = 219/294 (74%), Gaps = 14/294 (4%)

Query: 1   MARPIQVKPADSESRGGRD--------RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 52
           M RPIQVKPADSESRGG          RKLFVGMLNKQQSE+DV RLF+ FG I+ECT+L
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 183

Query: 53  RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM 112
           RGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM
Sbjct: 184 RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQM 243

Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSL 171
            GQ+G+  P + +PF  Y AYAQA+ QQ   + S + G YL+P  AF+   +QQ+ A+++
Sbjct: 244 AGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNM 302

Query: 172 NGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVP 230
           NGL A P+ P SG  +PP +   AVP + +PI  NGF G+ P   G PA E V+ANG+ P
Sbjct: 303 NGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHP 362

Query: 231 YPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
           YPAQSPT A+ L  A++GVQQY   A YP AA   I+ + PQPPP++ QQQREG
Sbjct: 363 YPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 415


>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
          Length = 465

 Score =  313 bits (802), Expect = 1e-85
 Identities = 163/280 (58%), Positives = 205/280 (73%), Gaps = 5/280 (1%)

Query: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
           M RPIQVKPADSESRG  DRKLFVGML KQQ++EDV ++F+PFG IDECTVLRGPDG+SK
Sbjct: 77  MNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
           GCAFVKF +H EAQAAI+ LH S+T+PGASSSLVVKFADT+KER LRRMQQ+  QLG+ +
Sbjct: 136 GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFS 195

Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
           P + L F  YSAY QALMQQQ  +++   +YLSP    +   +Q + A++ NGL ATPI 
Sbjct: 196 P-IALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPIT 254

Query: 181 PASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV- 238
           P+SG  +PP +  T V  + A +  NG++ V   P G PA + +Y NG+ PYPAQSP   
Sbjct: 255 PSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAP 314

Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ 278
            + L  A++G+Q YTA YP AA + +A + PQPP L+ QQ
Sbjct: 315 VDPLQQAYAGMQHYTAAYP-AAYSLVAPAFPQPPALVAQQ 353



 Score = 39.7 bits (91), Expect = 0.004
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 6   QVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCA 63
           Q +    + R G D   +F+  L ++ ++ ++L++F PFG VI     +      SK   
Sbjct: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424

Query: 64  FVKFSSHTEAQAAIHALHGSQ 84
           FV F +   AQAAI A++G Q
Sbjct: 425 FVSFDNPASAQAAIQAMNGFQ 445


>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
          Length = 481

 Score =  290 bits (741), Expect = 2e-78
 Identities = 164/284 (57%), Positives = 191/284 (67%), Gaps = 9/284 (3%)

Query: 1   MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
           M RPIQVKPA SE RG  DRKLFVGML KQQ EEDV RLFQPFG I+ECTVLR PDG+SK
Sbjct: 116 MNRPIQVKPAASEGRG-EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
           GCAFVKF S  EAQAAI  LHGS+TM GASSSLVVK ADTD+ER LRRMQQM G LG   
Sbjct: 175 GCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLGAFH 234

Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSLNGLPATPI 179
           P+  LP     AY  A++Q Q  +L+ + G  L P VA     +Q + A S   L A P+
Sbjct: 235 PA-PLPLGACGAYTTAILQHQAALLAAAQGPGLGP-VAAVAAQMQHVAAFS---LVAAPL 289

Query: 180 APASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV 238
            PA+  +SPP  G   +PGL API  NGF  + P   G P  +T+Y NGL PYPAQSP V
Sbjct: 290 LPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGV 349

Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282
           A+ L  A++G+  Y A YP +A  P++ + PQ P  L QQQREG
Sbjct: 350 ADPLQQAYAGMHHYAAAYP-SAYAPVSTAFPQQPSALPQQQREG 392



 Score = 59.7 bits (143), Expect = 3e-09
 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHA 79
           KLFVG + +   E+D+  LF+ FG I E TVL+    G  KGCAF+ + +   A  A  A
Sbjct: 47  KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query: 80  LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG 117
           LH  +T+PG +  + VK A ++     R++   VG LG
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKL--FVGMLG 142



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 2   ARPIQVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGPDGSS 59
           A P Q      + R G +   LF+  L ++  + ++++ F PFG +    V +      S
Sbjct: 377 AFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQS 436

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQ 84
           K   FV F + T AQ AI A++G Q
Sbjct: 437 KCFGFVSFDNPTSAQTAIQAMNGFQ 461


>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
           [Homo sapiens]
          Length = 508

 Score =  147 bits (372), Expect = 9e-36
 Identities = 124/350 (35%), Positives = 164/350 (46%), Gaps = 77/350 (22%)

Query: 1   MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE S    DRKLF+GM++K+ +E D+  +F PFG I+EC +LRGPDG S
Sbjct: 112 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 171

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
           +GCAFV FS+   AQ AI A+H SQTM G SS +VVKFADT K++  RR+QQ + Q    
Sbjct: 172 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231

Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
                      LG LTP                             L     +  A A  
Sbjct: 232 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 291

Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
             QT+  ST+ + LS   +        +GA++     +TP + A + ++S   LGT  + 
Sbjct: 292 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 342

Query: 198 GLVAPIT-----NGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQY 252
           GL          N  AG+    GG  A  T   NG       +    + L  A+SG+QQY
Sbjct: 343 GLAGATVGLNNINALAGMAALNGGLGA--TGLTNG-------TAGTMDALTQAYSGIQQY 393

Query: 253 TAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
                 AA  P  +S      LLQQQ   G  + G +     L  YH  Q
Sbjct: 394 -----AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 432



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+++  LF+P+G + +  VLR    +   SKGC FV F +   A  A 
Sbjct: 41  KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  +T+PG    + +K AD++K   +   +  +G +
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 139



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 6   QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           Q   A S+  G     LF+  L ++  ++D+L++F PFG VI     +      SK   F
Sbjct: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468

Query: 65  VKFSSHTEAQAAIHALHGSQ 84
           V + +   AQAAI A++G Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQ 488


>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
           [Homo sapiens]
          Length = 490

 Score =  144 bits (363), Expect = 1e-34
 Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%)

Query: 1   MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE S    DRKLF+GM++K+ +E D+  +F PFG I+EC +LRGPDG S
Sbjct: 88  MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
           +GCAFV FS+   AQ AI A+H SQTM G SS +VVKFADT K++  RR+QQ + Q    
Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207

Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
                      LG LTP                             L     +  A A  
Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267

Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196
             QT+  ST+ + LS   +        +GA++     +TP + A + ++S   LGT   +
Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 320

Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
            G    + N     V     G  AL   + A GL    A +    + L  A+SG+QQY  
Sbjct: 321 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 375

Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
               AA  P  +S      LLQQQ   G  + G +     L  YH  Q
Sbjct: 376 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 414



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+++  LF+P+G + +  VLR    +   SKGC FV F +   A  A 
Sbjct: 17  KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  +T+PG    + +K AD++K   +   +  +G +
Sbjct: 77  NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 6   QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           Q   A S+  G     LF+  L ++  ++D+L++F PFG VI     +      SK   F
Sbjct: 391 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 450

Query: 65  VKFSSHTEAQAAIHALHGSQ 84
           V + +   AQAAI A++G Q
Sbjct: 451 VSYDNPVSAQAAIQAMNGFQ 470


>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
           [Homo sapiens]
          Length = 521

 Score =  144 bits (363), Expect = 1e-34
 Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%)

Query: 1   MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE S    DRKLF+GM++K+ +E D+  +F PFG I+EC +LRGPDG S
Sbjct: 119 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 178

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
           +GCAFV FS+   AQ AI A+H SQTM G SS +VVKFADT K++  RR+QQ + Q    
Sbjct: 179 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238

Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
                      LG LTP                             L     +  A A  
Sbjct: 239 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 298

Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196
             QT+  ST+ + LS   +        +GA++     +TP + A + ++S   LGT   +
Sbjct: 299 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 351

Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
            G    + N     V     G  AL   + A GL    A +    + L  A+SG+QQY  
Sbjct: 352 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 406

Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
               AA  P  +S      LLQQQ   G  + G +     L  YH  Q
Sbjct: 407 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 445



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+++  LF+P+G + +  VLR    +   SKGC FV F +   A  A 
Sbjct: 48  KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  +T+PG    + +K AD++K   +   +  +G +
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 146



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 6   QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           Q   A S+  G     LF+  L ++  ++D+L++F PFG VI     +      SK   F
Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481

Query: 65  VKFSSHTEAQAAIHALHGSQ 84
           V + +   AQAAI A++G Q
Sbjct: 482 VSYDNPVSAQAAIQAMNGFQ 501


>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
           [Homo sapiens]
          Length = 488

 Score =  143 bits (361), Expect = 2e-34
 Identities = 120/346 (34%), Positives = 163/346 (47%), Gaps = 65/346 (18%)

Query: 1   MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE S    DRKLF+GM++K+ +E D+  +F PFG I+EC +LRGPDG S
Sbjct: 88  MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
           +GCAFV FS+   AQ AI A+H SQTM G SS +VVKFADT K++  RR+QQ + Q    
Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207

Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
                      LG LTP                             L     +  A A  
Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267

Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
             QT+  ST+ + LS   +        +GA++     +TP + A + ++S   LGT  + 
Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 318

Query: 198 GLVAPITNGFAGVVPFPGGHPALETVYAN-GLVPYPAQSPTVAETLHPAFSGVQQYTAMY 256
           GL A  T G   +    G   ++  +    G       +    + L  A+SG+QQY    
Sbjct: 319 GL-AGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQY---- 373

Query: 257 PTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
             AA  P  +S      LLQQQ   G  + G +     L  YH  Q
Sbjct: 374 -AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 412



 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+++  LF+P+G + +  VLR    +   SKGC FV F +   A  A 
Sbjct: 17  KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  +T+PG    + +K AD++K   +   +  +G +
Sbjct: 77  NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115



 Score = 45.4 bits (106), Expect = 7e-05
 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)

Query: 6   QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           Q   A S+  G     LF+  L ++  ++D+L++F PFG VI     +      SK   F
Sbjct: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448

Query: 65  VKFSSHTEAQAAIHALHGSQ 84
           V + +   AQAAI A++G Q
Sbjct: 449 VSYDNPVSAQAAIQAMNGFQ 468


>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
           [Homo sapiens]
          Length = 486

 Score =  134 bits (336), Expect = 1e-31
 Identities = 100/293 (34%), Positives = 142/293 (48%), Gaps = 48/293 (16%)

Query: 1   MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE      DRKLF+GM++K+ +E D+  +F  FG I+EC +LRGPDG S
Sbjct: 88  MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
           +GCAFV F++   AQ AI A+H +QTM G SS +VVKFADT K++  +RM Q + Q    
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207

Query: 116 ------LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAV 169
                  G L    TL     + Y Q L Q  ++    + S L P    +   +Q + A+
Sbjct: 208 ISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL 267

Query: 170 SLNGLPA-----------TPIAPASGLHSPPLLGTTAVPGLVAPITN------------- 205
           +     A           T  +P S L S     +++    V PI +             
Sbjct: 268 AAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAG 327

Query: 206 ----GFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
                 AG+    GG  +  +  +NG       + +  E L  A+SG+QQY A
Sbjct: 328 LNVGSLAGMAALNGGLGS--SGLSNG-------TGSTMEALTQAYSGIQQYAA 371



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+D+  LF+ +G + E  VLR    +   SKGC FV F +   A  A 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  + +PG    + +K AD++K   +   +  +G +
Sbjct: 77  NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 10  ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
           A S+  G     LF+  L ++  ++D+L++F PFG V+     +      SK   FV + 
Sbjct: 391 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450

Query: 69  SHTEAQAAIHALHGSQ 84
           +   AQAAI +++G Q
Sbjct: 451 NPVSAQAAIQSMNGFQ 466


>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
           [Homo sapiens]
          Length = 482

 Score =  129 bits (324), Expect = 3e-30
 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE      DRKLF+GM++K+ +E D+  +F  FG I+EC +LRGPDG S
Sbjct: 88  MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
           +GCAFV F++   AQ AI A+H +QTM G SS +VVKFADT K++  +RM Q + Q
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+D+  LF+ +G + E  VLR    +   SKGC FV F +   A  A 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  + +PG    + +K AD++K   +   +  +G +
Sbjct: 77  NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 10  ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
           A S+  G     LF+  L ++  ++D+L++F PFG V+     +      SK   FV + 
Sbjct: 387 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 446

Query: 69  SHTEAQAAIHALHGSQ 84
           +   AQAAI +++G Q
Sbjct: 447 NPVSAQAAIQSMNGFQ 462


>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
           [Homo sapiens]
          Length = 483

 Score =  129 bits (324), Expect = 3e-30
 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 1   MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
           M  PIQ+KPADSE      DRKLF+GM++K+ +E D+  +F  FG I+EC +LRGPDG S
Sbjct: 88  MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
           +GCAFV F++   AQ AI A+H +QTM G SS +VVKFADT K++  +RM Q + Q
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203



 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)

Query: 21  KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
           K+FVG + +  SE+D+  LF+ +G + E  VLR    +   SKGC FV F +   A  A 
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query: 78  HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
           +ALH  + +PG    + +K AD++K   +   +  +G +
Sbjct: 77  NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115



 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 10  ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
           A S+  G     LF+  L ++  ++D+L++F PFG V+     +      SK   FV + 
Sbjct: 388 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 447

Query: 69  SHTEAQAAIHALHGSQ 84
           +   AQAAI +++G Q
Sbjct: 448 NPVSAQAAIQSMNGFQ 463


>gi|115511032 ELAV (embryonic lethal, abnormal vision,
           Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
          Length = 359

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 18/180 (10%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG 167

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP 121
             F++F    EA+ AI  L+G Q  PGA+  + VKFA+   ++T + +   + Q      
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFANNPSQKTNQAILSQLYQ------ 220

Query: 122 SLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGV-AFSPCHIQ---QIGAVSLNGLPAT 177
                 SP   Y   L QQ       +   ++ GV  FSP  I     +  +++ G P T
Sbjct: 221 ------SPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 13/130 (10%)

Query: 9   PADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKF 67
           P DS +       L V  L +  ++E++  LF   G I+ C ++R    G S G  FV +
Sbjct: 28  PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87

Query: 68  SSHTEAQAAIHALHG----------SQTMPGASS--SLVVKFADTDKERTLRRMQQMVGQ 115
               +A+ AI+ L+G          S   P ++S     +  +   K  T + ++Q+  Q
Sbjct: 88  IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147

Query: 116 LGILTPSLTL 125
            G +  S  L
Sbjct: 148 YGRIITSRIL 157



 Score = 33.1 bits (74), Expect = 0.34
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L     E  + ++F PFG +    V+R       KG  FV  +++ EA  AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query: 81  HG 82
           +G
Sbjct: 338 NG 339


>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
          Length = 424

 Score = 58.2 bits (139), Expect = 1e-08
 Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 23/233 (9%)

Query: 3   RPIQVKPADSESRG-GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-VLRGPD-GSS 59
           +PI+V  A + ++       +F+G L+ +  E+ +   F  FGVI +   ++R PD G+S
Sbjct: 82  KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS 141

Query: 60  KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIL 119
           KG AF+ F+S   + AAI A++G       +  + V +A     +  R        L   
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGERHGSAAERLLAAQ 198

Query: 120 TPSLTLPFSPYSAYAQA--LMQQQTTVLSTSGSYL----SPGVAFSPCHIQQIGAVSLN- 172
            P L+    P+  +A A         V+S+ GS L     P     P  +   GA+    
Sbjct: 199 NP-LSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGI 257

Query: 173 --GLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG---HPAL 220
              +P  P+ P +  H PP  GT   PG   P  +G +   PFP G   HP +
Sbjct: 258 PPAMPPPPMPPGAAGHGPPSAGT---PGAGHP-GHGHSHPHPFPPGGMPHPGM 306


>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
          Length = 367

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  S++++ +LF  +G +I    ++    G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105
             F++F    EA+ AI  L+G + + GA+  + VKFA+   ++T
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+ +  E  + +LF PFG +    V+R       KG  FV  +++ EA  AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345

Query: 81  HG 82
           +G
Sbjct: 346 NG 347


>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
          Length = 360

 Score = 55.1 bits (131), Expect = 8e-08
 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  S++++ +LF  +G +I    ++    G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105
             F++F    EA+ AI  L+G + + GA+  + VKFA+   ++T
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+ +  E  + +LF PFG +    V+R       KG  FV  +++ EA  AI +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338

Query: 81  HG 82
           +G
Sbjct: 339 NG 340


>gi|38201714 ELAV-like 1 [Homo sapiens]
          Length = 326

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%)

Query: 2   ARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSK 60
           ++ I+V  A   S   +D  L++  L +  +++DV  +F  FG +I+   ++    G S+
Sbjct: 88  SKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147

Query: 61  GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 98
           G AF++F   +EA+ AI + +G +  PG+S  + VKFA
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFA 184



 Score = 33.5 bits (75), Expect = 0.26
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +F+  L +   E  + ++F PFG +    V+R       KG  FV  +++ EA  AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305

Query: 81  HG 82
           +G
Sbjct: 306 NG 307


>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
          Length = 380

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
             F++F    EA+ AI  L+G Q   GA+  + VKFA+   +++ + +   + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+    E  + +LF PFG ++   V+R       KG  FV  +++ EA  AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358

Query: 81  HG 82
           +G
Sbjct: 359 NG 360


>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
          Length = 369

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 118 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 177

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
             F++F    EA+ AI  L+G Q   GA+  + VKFA+   +++ + +   + Q
Sbjct: 178 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 230



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+    E  + +LF PFG ++   V+R       KG  FV  +++ EA  AI +L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347

Query: 81  HG 82
           +G
Sbjct: 348 NG 349


>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
          Length = 366

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
             F++F    EA+ AI  L+G Q   GA+  + VKFA+   +++ + +   + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+    E  + +LF PFG ++   V+R       KG  FV  +++ EA  AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 81  HG 82
           +G
Sbjct: 345 NG 346


>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
          Length = 383

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 132 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 191

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
             F++F    EA+ AI  L+G Q   GA+  + VKFA+   +++ + +   + Q
Sbjct: 192 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 244



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+    E  + +LF PFG ++   V+R       KG  FV  +++ EA  AI +L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361

Query: 81  HG 82
           +G
Sbjct: 362 NG 363


>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
          Length = 366

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)

Query: 3   RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
           + I+V  A   S   RD  L+V  L K  +++++ +LF  +G +I    ++    G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174

Query: 62  CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
             F++F    EA+ AI  L+G Q   GA+  + VKFA+   +++ + +   + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227



 Score = 36.2 bits (82), Expect = 0.040
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
           +FV  L+    E  + +LF PFG ++   V+R       KG  FV  +++ EA  AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344

Query: 81  HG 82
           +G
Sbjct: 345 NG 346


>gi|4506447 RNA binding motif, single stranded interacting protein 1
           isoform c [Homo sapiens]
          Length = 403

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 58/234 (24%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
           L++  L     E+++  + +PFG +    +LR   G+S+G  F +  S  + +A I   +
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202

Query: 82  GS--QTMPGASS---SLVVKFADTDKERTLR--------RMQQMVGQLGI---------- 118
           G   +T PG S+    L+ KFAD  +++           R     G+ G+          
Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAA 262

Query: 119 ----------------------LTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPG- 155
                                 +TP +  P S Y   + + MQ Q  +L   G+ L+P  
Sbjct: 263 IQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSM 322

Query: 156 ---VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197
              ++  P  +     QQ+  +SL      +PAT     + L     + TTAVP
Sbjct: 323 EHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 376



 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 35/298 (11%)

Query: 10  ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           + S S  G D+     L++  L    +++D+++L QP+G ++    +L       KG  F
Sbjct: 48  SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107

Query: 65  VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112
           V F S   AQ A+ AL  S      +            S+L +   + + E  L+   Q+
Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167

Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166
           +    IL  S         A  ++  + +  +   +G ++   PGV+       C     
Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226

Query: 167 GAVSLNGLPATPIAPASGLHSPPLLGTTAV-PGLVAPITNGFAGVVPFPGGHPALETVYA 225
           G       P   I      H     G T       A I NGF    P P        +  
Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGF---YPSPYSIATNRMITQ 282

Query: 226 NGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQQ 277
             + PY A   +  +   P++   Q Y   +P A +TP + H++   P     PL QQ
Sbjct: 283 TSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQ 340


>gi|8400718 RNA binding motif, single stranded interacting protein 1
           isoform a [Homo sapiens]
          Length = 406

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 63/238 (26%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
           L++  L     E+++  + +PFG +    +LR   G+S+G  F +  S  + +A I   +
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202

Query: 82  GS--QTMPGASS---SLVVKFADTDKER-------------------------------T 105
           G   +T PG S+    L+ KFAD  +++                               T
Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT 262

Query: 106 LRRMQ-------------QMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYL 152
              +Q             +M+ Q  I TP +  P S Y   + + MQ Q  +L   G+ L
Sbjct: 263 TAAIQNGFYPSPYSIATNRMITQTSI-TPYIASPVSAYQVQSPSWMQPQPYILQHPGAVL 321

Query: 153 SPG----VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197
           +P     ++  P  +     QQ+  +SL      +PAT     + L     + TTAVP
Sbjct: 322 TPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 379



 Score = 41.2 bits (95), Expect = 0.001
 Identities = 68/301 (22%), Positives = 111/301 (36%), Gaps = 38/301 (12%)

Query: 10  ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
           + S S  G D+     L++  L    +++D+++L QP+G ++    +L       KG  F
Sbjct: 48  SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107

Query: 65  VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112
           V F S   AQ A+ AL  S      +            S+L +   + + E  L+   Q+
Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167

Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166
           +    IL  S         A  ++  + +  +   +G ++   PGV+       C     
Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226

Query: 167 GAVSLNGLPATPIAPASGLHSPP---LLGTTAV-PGLVAPITNGFAGVVPFPGGHPALET 222
           G       P   I      H      L G T       A I NGF    P P        
Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGF---YPSPYSIATNRM 282

Query: 223 VYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQ 276
           +    + PY A   +  +   P++   Q Y   +P A +TP + H++   P     PL Q
Sbjct: 283 ITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQ 342

Query: 277 Q 277
           Q
Sbjct: 343 Q 343


>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
          Length = 375

 Score = 48.9 bits (115), Expect = 6e-06
 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%)

Query: 20  RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 79
           + L+VG L++  +E  +L+LF   G    C ++    G+   C FV+F  H  A AA+ A
Sbjct: 7   KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAA 65

Query: 80  LHGSQTMPGASSSLVVKFADT---DKERTLRRMQQMVGQLG--ILTPSLTLPFSPYSAYA 134
           ++G + M      + V +A T    K+ T       VG L   I T  +   F+P+   +
Sbjct: 66  MNGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122

Query: 135 QALMQQQTTVLSTSG----SYLSPGVAFSPCHIQQIGAVSLNG 173
            A + +      + G    S+ +   A +   IQQ+G   L G
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENA--IQQMGGQWLGG 163



 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 1   MARPIQVKPADSESRGGRDRK----LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P 55
           M + ++V  A + S   +D      +FVG L+ + + ED+   F PFG I +  V++   
Sbjct: 72  MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131

Query: 56  DGSSKGCAFVKFSSHTEAQAAIHALHG 82
            G SKG  FV F +  +A+ AI  + G
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGG 158



 Score = 35.0 bits (79), Expect = 0.089
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
           ++ G +    +E+ + + F PFG I E  V   PD   KG +FV+F+SH  A  AI +++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF--PD---KGYSFVRFNSHESAAHAIVSVN 259

Query: 82  GS 83
           G+
Sbjct: 260 GT 261


>gi|51317355 RNA binding motif, single stranded interacting protein
           3 isoform 1 [Homo sapiens]
          Length = 437

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
           L++  L     E+++  + +PFG +    +LR  +G S+G  F +  S  + +  I   +
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201

Query: 82  GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131
           G        +P  S  L+ KFAD  +++  R+ Q    Q G   P      + L + P +
Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259

Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188
           A          ++ +      + ++P +A SP    Q+ + S    P   + P   + +P
Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319

Query: 189 PL 190
            +
Sbjct: 320 TM 321


>gi|51317351 RNA binding motif, single stranded interacting protein
           3 isoform 2 [Homo sapiens]
          Length = 420

 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%)

Query: 22  LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
           L++  L     E+++  + +PFG +    +LR  +G S+G  F +  S  + +  I   +
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201

Query: 82  GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131
           G        +P  S  L+ KFAD  +++  R+ Q    Q G   P      + L + P +
Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259

Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188
           A          ++ +      + ++P +A SP    Q+ + S    P   + P   + +P
Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319

Query: 189 PL 190
            +
Sbjct: 320 TM 321


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,798,550
Number of Sequences: 37866
Number of extensions: 722344
Number of successful extensions: 3139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 696
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press