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Search of human proteins with 225579097
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 645 0.0
gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 565 e-161
gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 355 4e-98
gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 354 5e-98
gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 349 2e-96
gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 347 1e-95
gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 313 1e-85
gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 290 2e-78
gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 147 9e-36
gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 144 1e-34
gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 144 1e-34
gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 143 2e-34
gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 134 1e-31
gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 129 3e-30
gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 129 3e-30
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 59 8e-09
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 58 1e-08
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 55 8e-08
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 55 8e-08
gi|38201714 ELAV-like 1 [Homo sapiens] 53 4e-07
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 52 5e-07
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 52 5e-07
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 52 5e-07
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 52 5e-07
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 52 5e-07
gi|4506447 RNA binding motif, single stranded interacting protei... 52 7e-07
gi|8400718 RNA binding motif, single stranded interacting protei... 50 2e-06
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 49 6e-06
gi|51317355 RNA binding motif, single stranded interacting prote... 49 8e-06
gi|51317351 RNA binding motif, single stranded interacting prote... 49 8e-06
>gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo
sapiens]
Length = 320
Score = 645 bits (1663), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK
Sbjct: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT
Sbjct: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA
Sbjct: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240
PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE
Sbjct: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240
Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300
TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF
Sbjct: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300
Query: 301 LQGVYGSSYQPEQVFRLREL 320
LQGVYGSSYQPEQVFRLREL
Sbjct: 301 LQGVYGSSYQPEQVFRLREL 320
>gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo
sapiens]
Length = 485
Score = 565 bits (1456), Expect = e-161
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK
Sbjct: 115 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT
Sbjct: 175 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 234
Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA
Sbjct: 235 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 294
Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240
PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE
Sbjct: 295 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 354
Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282
TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG
Sbjct: 355 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 396
Score = 36.6 bits (83), Expect = 0.031
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 13 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHT 71
+ G LF+ L ++ + ++ ++F PFG +I + SK FV F +
Sbjct: 393 QREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPA 452
Query: 72 EAQAAIHALHGSQ 84
AQAAI A++G Q
Sbjct: 453 SAQAAIQAMNGFQ 465
>gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo
sapiens]
Length = 448
Score = 355 bits (910), Expect = 4e-98
Identities = 184/287 (64%), Positives = 222/287 (77%), Gaps = 8/287 (2%)
Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
M RPIQVKPADSESRG DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+LRGPDG+SK
Sbjct: 124 MNRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 182
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
GCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM GQ+G+
Sbjct: 183 GCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFN 242
Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATP 178
P + +PF Y AYAQALMQQQ ++++ G YL+P AF+ +QQ+ A+++NGL A P
Sbjct: 243 P-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAP 301
Query: 179 IAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPT 237
+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ PYPAQSPT
Sbjct: 302 MTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPT 361
Query: 238 VAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 362 AADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 407
>gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo
sapiens]
Length = 486
Score = 354 bits (909), Expect = 5e-98
Identities = 185/296 (62%), Positives = 224/296 (75%), Gaps = 16/296 (5%)
Query: 1 MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51
M RPIQVKPADSESRGG +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183
Query: 52 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111
LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ
Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243
Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAV 169
M GQ+G+ P + +PF Y AYAQALMQQQ ++++ G YL+P AF+ +QQ+ A+
Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 302
Query: 170 SLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGL 228
++NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+
Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI 362
Query: 229 VPYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
PYPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 363 HPYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 417
>gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo
sapiens]
Length = 485
Score = 349 bits (896), Expect = 2e-96
Identities = 183/295 (62%), Positives = 221/295 (74%), Gaps = 15/295 (5%)
Query: 1 MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51
M RPIQVKPADSESRGG +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183
Query: 52 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111
LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ
Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243
Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVS 170
M GQ+G+ P + +PF Y AYAQA+ QQ + S + G YL+P AF+ +QQ+ A++
Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALN 302
Query: 171 LNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLV 229
+NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+
Sbjct: 303 MNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIH 362
Query: 230 PYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
PYPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 363 PYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 416
>gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo
sapiens]
Length = 484
Score = 347 bits (889), Expect = 1e-95
Identities = 182/294 (61%), Positives = 219/294 (74%), Gaps = 14/294 (4%)
Query: 1 MARPIQVKPADSESRGGRD--------RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 52
M RPIQVKPADSESRGG RKLFVGMLNKQQSE+DV RLF+ FG I+ECT+L
Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 183
Query: 53 RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM 112
RGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM
Sbjct: 184 RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQM 243
Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSL 171
GQ+G+ P + +PF Y AYAQA+ QQ + S + G YL+P AF+ +QQ+ A+++
Sbjct: 244 AGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNM 302
Query: 172 NGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVP 230
NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ P
Sbjct: 303 NGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHP 362
Query: 231 YPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282
YPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG
Sbjct: 363 YPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 415
>gi|71164894 trinucleotide repeat containing 4 [Homo sapiens]
Length = 465
Score = 313 bits (802), Expect = 1e-85
Identities = 163/280 (58%), Positives = 205/280 (73%), Gaps = 5/280 (1%)
Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
M RPIQVKPADSESRG DRKLFVGML KQQ++EDV ++F+PFG IDECTVLRGPDG+SK
Sbjct: 77 MNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
GCAFVKF +H EAQAAI+ LH S+T+PGASSSLVVKFADT+KER LRRMQQ+ QLG+ +
Sbjct: 136 GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFS 195
Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180
P + L F YSAY QALMQQQ +++ +YLSP + +Q + A++ NGL ATPI
Sbjct: 196 P-IALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPIT 254
Query: 181 PASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV- 238
P+SG +PP + T V + A + NG++ V P G PA + +Y NG+ PYPAQSP
Sbjct: 255 PSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAP 314
Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ 278
+ L A++G+Q YTA YP AA + +A + PQPP L+ QQ
Sbjct: 315 VDPLQQAYAGMQHYTAAYP-AAYSLVAPAFPQPPALVAQQ 353
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 6 QVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCA 63
Q + + R G D +F+ L ++ ++ ++L++F PFG VI + SK
Sbjct: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424
Query: 64 FVKFSSHTEAQAAIHALHGSQ 84
FV F + AQAAI A++G Q
Sbjct: 425 FVSFDNPASAQAAIQAMNGFQ 445
>gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens]
Length = 481
Score = 290 bits (741), Expect = 2e-78
Identities = 164/284 (57%), Positives = 191/284 (67%), Gaps = 9/284 (3%)
Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
M RPIQVKPA SE RG DRKLFVGML KQQ EEDV RLFQPFG I+ECTVLR PDG+SK
Sbjct: 116 MNRPIQVKPAASEGRG-EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120
GCAFVKF S EAQAAI LHGS+TM GASSSLVVK ADTD+ER LRRMQQM G LG
Sbjct: 175 GCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLGAFH 234
Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSLNGLPATPI 179
P+ LP AY A++Q Q +L+ + G L P VA +Q + A S L A P+
Sbjct: 235 PA-PLPLGACGAYTTAILQHQAALLAAAQGPGLGP-VAAVAAQMQHVAAFS---LVAAPL 289
Query: 180 APASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV 238
PA+ +SPP G +PGL API NGF + P G P +T+Y NGL PYPAQSP V
Sbjct: 290 LPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGV 349
Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282
A+ L A++G+ Y A YP +A P++ + PQ P L QQQREG
Sbjct: 350 ADPLQQAYAGMHHYAAAYP-SAYAPVSTAFPQQPSALPQQQREG 392
Score = 59.7 bits (143), Expect = 3e-09
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHA 79
KLFVG + + E+D+ LF+ FG I E TVL+ G KGCAF+ + + A A A
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106
Query: 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG 117
LH +T+PG + + VK A ++ R++ VG LG
Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKL--FVGMLG 142
Score = 37.0 bits (84), Expect = 0.023
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 2 ARPIQVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGPDGSS 59
A P Q + R G + LF+ L ++ + ++++ F PFG + V + S
Sbjct: 377 AFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQS 436
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQ 84
K FV F + T AQ AI A++G Q
Sbjct: 437 KCFGFVSFDNPTSAQTAIQAMNGFQ 461
>gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3
[Homo sapiens]
Length = 508
Score = 147 bits (372), Expect = 9e-36
Identities = 124/350 (35%), Positives = 164/350 (46%), Gaps = 77/350 (22%)
Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 112 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 171
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 172 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231
Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
LG LTP L + A A
Sbjct: 232 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 291
Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 292 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 342
Query: 198 GLVAPIT-----NGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQY 252
GL N AG+ GG A T NG + + L A+SG+QQY
Sbjct: 343 GLAGATVGLNNINALAGMAALNGGLGA--TGLTNG-------TAGTMDALTQAYSGIQQY 393
Query: 253 TAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
AA P +S LLQQQ G + G + L YH Q
Sbjct: 394 -----AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 432
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 139
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468
Query: 65 VKFSSHTEAQAAIHALHGSQ 84
V + + AQAAI A++G Q
Sbjct: 469 VSYDNPVSAQAAIQAMNGFQ 488
>gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1
[Homo sapiens]
Length = 490
Score = 144 bits (363), Expect = 1e-34
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%)
Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 88 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207
Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
LG LTP L + A A
Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267
Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 320
Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
G + N V G AL + A GL A + + L A+SG+QQY
Sbjct: 321 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 375
Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
AA P +S LLQQQ G + G + L YH Q
Sbjct: 376 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 414
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 391 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 450
Query: 65 VKFSSHTEAQAAIHALHGSQ 84
V + + AQAAI A++G Q
Sbjct: 451 VSYDNPVSAQAAIQAMNGFQ 470
>gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2
[Homo sapiens]
Length = 521
Score = 144 bits (363), Expect = 1e-34
Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%)
Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 119 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 178
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 179 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238
Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
LG LTP L + A A
Sbjct: 239 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 298
Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 299 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 351
Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
G + N V G AL + A GL A + + L A+SG+QQY
Sbjct: 352 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 406
Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
AA P +S LLQQQ G + G + L YH Q
Sbjct: 407 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 445
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 146
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481
Query: 65 VKFSSHTEAQAAIHALHGSQ 84
V + + AQAAI A++G Q
Sbjct: 482 VSYDNPVSAQAAIQAMNGFQ 501
>gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4
[Homo sapiens]
Length = 488
Score = 143 bits (361), Expect = 2e-34
Identities = 120/346 (34%), Positives = 163/346 (47%), Gaps = 65/346 (18%)
Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S
Sbjct: 88 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
+GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q
Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207
Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138
LG LTP L + A A
Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267
Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197
QT+ ST+ + LS + +GA++ +TP + A + ++S LGT +
Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 318
Query: 198 GLVAPITNGFAGVVPFPGGHPALETVYAN-GLVPYPAQSPTVAETLHPAFSGVQQYTAMY 256
GL A T G + G ++ + G + + L A+SG+QQY
Sbjct: 319 GL-AGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQY---- 373
Query: 257 PTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302
AA P +S LLQQQ G + G + L YH Q
Sbjct: 374 -AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 412
Score = 64.3 bits (155), Expect = 1e-10
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A
Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH +T+PG + +K AD++K + + +G +
Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115
Score = 45.4 bits (106), Expect = 7e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F
Sbjct: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448
Query: 65 VKFSSHTEAQAAIHALHGSQ 84
V + + AQAAI A++G Q
Sbjct: 449 VSYDNPVSAQAAIQAMNGFQ 468
>gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3
[Homo sapiens]
Length = 486
Score = 134 bits (336), Expect = 1e-31
Identities = 100/293 (34%), Positives = 142/293 (48%), Gaps = 48/293 (16%)
Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115
+GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207
Query: 116 ------LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAV 169
G L TL + Y Q L Q ++ + S L P + +Q + A+
Sbjct: 208 ISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL 267
Query: 170 SLNGLPA-----------TPIAPASGLHSPPLLGTTAVPGLVAPITN------------- 205
+ A T +P S L S +++ V PI +
Sbjct: 268 AAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAG 327
Query: 206 ----GFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254
AG+ GG + + +NG + + E L A+SG+QQY A
Sbjct: 328 LNVGSLAGMAALNGGLGS--SGLSNG-------TGSTMEALTQAYSGIQQYAA 371
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH + +PG + +K AD++K + + +G +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115
Score = 42.4 bits (98), Expect = 6e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV +
Sbjct: 391 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450
Query: 69 SHTEAQAAIHALHGSQ 84
+ AQAAI +++G Q
Sbjct: 451 NPVSAQAAIQSMNGFQ 466
>gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1
[Homo sapiens]
Length = 482
Score = 129 bits (324), Expect = 3e-30
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
+GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH + +PG + +K AD++K + + +G +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115
Score = 42.4 bits (98), Expect = 6e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV +
Sbjct: 387 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 446
Query: 69 SHTEAQAAIHALHGSQ 84
+ AQAAI +++G Q
Sbjct: 447 NPVSAQAAIQSMNGFQ 462
>gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2
[Homo sapiens]
Length = 483
Score = 129 bits (324), Expect = 3e-30
Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59
M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
+GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q
Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203
Score = 62.0 bits (149), Expect = 7e-10
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77
K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116
+ALH + +PG + +K AD++K + + +G +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115
Score = 42.4 bits (98), Expect = 6e-04
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68
A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV +
Sbjct: 388 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 447
Query: 69 SHTEAQAAIHALHGSQ 84
+ AQAAI +++G Q
Sbjct: 448 NPVSAQAAIQSMNGFQ 463
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 58.5 bits (140), Expect = 8e-09
Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 18/180 (10%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG 167
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP 121
F++F EA+ AI L+G Q PGA+ + VKFA+ ++T + + + Q
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFANNPSQKTNQAILSQLYQ------ 220
Query: 122 SLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGV-AFSPCHIQ---QIGAVSLNGLPAT 177
SP Y L QQ + ++ GV FSP I + +++ G P T
Sbjct: 221 ------SPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 13/130 (10%)
Query: 9 PADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKF 67
P DS + L V L + ++E++ LF G I+ C ++R G S G FV +
Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87
Query: 68 SSHTEAQAAIHALHG----------SQTMPGASS--SLVVKFADTDKERTLRRMQQMVGQ 115
+A+ AI+ L+G S P ++S + + K T + ++Q+ Q
Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147
Query: 116 LGILTPSLTL 125
G + S L
Sbjct: 148 YGRIITSRIL 157
Score = 33.1 bits (74), Expect = 0.34
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L E + ++F PFG + V+R KG FV +++ EA AI +L
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 81 HG 82
+G
Sbjct: 338 NG 339
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 58.2 bits (139), Expect = 1e-08
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 23/233 (9%)
Query: 3 RPIQVKPADSESRG-GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-VLRGPD-GSS 59
+PI+V A + ++ +F+G L+ + E+ + F FGVI + ++R PD G+S
Sbjct: 82 KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS 141
Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIL 119
KG AF+ F+S + AAI A++G + + V +A + R L
Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGERHGSAAERLLAAQ 198
Query: 120 TPSLTLPFSPYSAYAQA--LMQQQTTVLSTSGSYL----SPGVAFSPCHIQQIGAVSLN- 172
P L+ P+ +A A V+S+ GS L P P + GA+
Sbjct: 199 NP-LSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGI 257
Query: 173 --GLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG---HPAL 220
+P P+ P + H PP GT PG P +G + PFP G HP +
Sbjct: 258 PPAMPPPPMPPGAAGHGPPSAGT---PGAGHP-GHGHSHPHPFPPGGMPHPGM 306
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 55.1 bits (131), Expect = 8e-08
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K S++++ +LF +G +I ++ G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105
F++F EA+ AI L+G + + GA+ + VKFA+ ++T
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ + E + +LF PFG + V+R KG FV +++ EA AI +L
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 81 HG 82
+G
Sbjct: 346 NG 347
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 55.1 bits (131), Expect = 8e-08
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K S++++ +LF +G +I ++ G S+G
Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105
F++F EA+ AI L+G + + GA+ + VKFA+ ++T
Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ + E + +LF PFG + V+R KG FV +++ EA AI +L
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 81 HG 82
+G
Sbjct: 339 NG 340
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 52.8 bits (125), Expect = 4e-07
Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 2 ARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSK 60
++ I+V A S +D L++ L + +++DV +F FG +I+ ++ G S+
Sbjct: 88 SKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147
Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 98
G AF++F +EA+ AI + +G + PG+S + VKFA
Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFA 184
Score = 33.5 bits (75), Expect = 0.26
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+F+ L + E + ++F PFG + V+R KG FV +++ EA AI +L
Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305
Query: 81 HG 82
+G
Sbjct: 306 NG 307
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 81 HG 82
+G
Sbjct: 359 NG 360
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 118 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 177
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q
Sbjct: 178 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 230
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 81 HG 82
+G
Sbjct: 348 NG 349
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 81 HG 82
+G
Sbjct: 345 NG 346
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 132 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 191
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q
Sbjct: 192 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 244
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 81 HG 82
+G
Sbjct: 362 NG 363
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 52.4 bits (124), Expect = 5e-07
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61
+ I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G
Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174
Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115
F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q
Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227
Score = 36.2 bits (82), Expect = 0.040
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80
+FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 81 HG 82
+G
Sbjct: 345 NG 346
>gi|4506447 RNA binding motif, single stranded interacting protein 1
isoform c [Homo sapiens]
Length = 403
Score = 52.0 bits (123), Expect = 7e-07
Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 58/234 (24%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
L++ L E+++ + +PFG + +LR G+S+G F + S + +A I +
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202
Query: 82 GS--QTMPGASS---SLVVKFADTDKERTLR--------RMQQMVGQLGI---------- 118
G +T PG S+ L+ KFAD +++ R G+ G+
Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAA 262
Query: 119 ----------------------LTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPG- 155
+TP + P S Y + + MQ Q +L G+ L+P
Sbjct: 263 IQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSM 322
Query: 156 ---VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197
++ P + QQ+ +SL +PAT + L + TTAVP
Sbjct: 323 EHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 376
Score = 43.9 bits (102), Expect = 2e-04
Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 35/298 (11%)
Query: 10 ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
+ S S G D+ L++ L +++D+++L QP+G ++ +L KG F
Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107
Query: 65 VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112
V F S AQ A+ AL S + S+L + + + E L+ Q+
Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167
Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166
+ IL S A ++ + + + +G ++ PGV+ C
Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226
Query: 167 GAVSLNGLPATPIAPASGLHSPPLLGTTAV-PGLVAPITNGFAGVVPFPGGHPALETVYA 225
G P I H G T A I NGF P P +
Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGF---YPSPYSIATNRMITQ 282
Query: 226 NGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQQ 277
+ PY A + + P++ Q Y +P A +TP + H++ P PL QQ
Sbjct: 283 TSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQ 340
>gi|8400718 RNA binding motif, single stranded interacting protein 1
isoform a [Homo sapiens]
Length = 406
Score = 50.4 bits (119), Expect = 2e-06
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 63/238 (26%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
L++ L E+++ + +PFG + +LR G+S+G F + S + +A I +
Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202
Query: 82 GS--QTMPGASS---SLVVKFADTDKER-------------------------------T 105
G +T PG S+ L+ KFAD +++ T
Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT 262
Query: 106 LRRMQ-------------QMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYL 152
+Q +M+ Q I TP + P S Y + + MQ Q +L G+ L
Sbjct: 263 TAAIQNGFYPSPYSIATNRMITQTSI-TPYIASPVSAYQVQSPSWMQPQPYILQHPGAVL 321
Query: 153 SPG----VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197
+P ++ P + QQ+ +SL +PAT + L + TTAVP
Sbjct: 322 TPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 379
Score = 41.2 bits (95), Expect = 0.001
Identities = 68/301 (22%), Positives = 111/301 (36%), Gaps = 38/301 (12%)
Query: 10 ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64
+ S S G D+ L++ L +++D+++L QP+G ++ +L KG F
Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107
Query: 65 VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112
V F S AQ A+ AL S + S+L + + + E L+ Q+
Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167
Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166
+ IL S A ++ + + + +G ++ PGV+ C
Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226
Query: 167 GAVSLNGLPATPIAPASGLHSPP---LLGTTAV-PGLVAPITNGFAGVVPFPGGHPALET 222
G P I H L G T A I NGF P P
Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGF---YPSPYSIATNRM 282
Query: 223 VYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQ 276
+ + PY A + + P++ Q Y +P A +TP + H++ P PL Q
Sbjct: 283 ITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQ 342
Query: 277 Q 277
Q
Sbjct: 343 Q 343
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 48.9 bits (115), Expect = 6e-06
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%)
Query: 20 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 79
+ L+VG L++ +E +L+LF G C ++ G+ C FV+F H A AA+ A
Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAA 65
Query: 80 LHGSQTMPGASSSLVVKFADT---DKERTLRRMQQMVGQLG--ILTPSLTLPFSPYSAYA 134
++G + M + V +A T K+ T VG L I T + F+P+ +
Sbjct: 66 MNGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122
Query: 135 QALMQQQTTVLSTSG----SYLSPGVAFSPCHIQQIGAVSLNG 173
A + + + G S+ + A + IQQ+G L G
Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENA--IQQMGGQWLGG 163
Score = 42.7 bits (99), Expect = 4e-04
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 1 MARPIQVKPADSESRGGRDRK----LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P 55
M + ++V A + S +D +FVG L+ + + ED+ F PFG I + V++
Sbjct: 72 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131
Query: 56 DGSSKGCAFVKFSSHTEAQAAIHALHG 82
G SKG FV F + +A+ AI + G
Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGG 158
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
++ G + +E+ + + F PFG I E V PD KG +FV+F+SH A AI +++
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF--PD---KGYSFVRFNSHESAAHAIVSVN 259
Query: 82 GS 83
G+
Sbjct: 260 GT 261
>gi|51317355 RNA binding motif, single stranded interacting protein
3 isoform 1 [Homo sapiens]
Length = 437
Score = 48.5 bits (114), Expect = 8e-06
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
L++ L E+++ + +PFG + +LR +G S+G F + S + + I +
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201
Query: 82 GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131
G +P S L+ KFAD +++ R+ Q Q G P + L + P +
Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259
Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188
A ++ + + ++P +A SP Q+ + S P + P + +P
Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319
Query: 189 PL 190
+
Sbjct: 320 TM 321
>gi|51317351 RNA binding motif, single stranded interacting protein
3 isoform 2 [Homo sapiens]
Length = 420
Score = 48.5 bits (114), Expect = 8e-06
Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81
L++ L E+++ + +PFG + +LR +G S+G F + S + + I +
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201
Query: 82 GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131
G +P S L+ KFAD +++ R+ Q Q G P + L + P +
Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259
Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188
A ++ + + ++P +A SP Q+ + S P + P + +P
Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319
Query: 189 PL 190
+
Sbjct: 320 TM 321
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,798,550
Number of Sequences: 37866
Number of extensions: 722344
Number of successful extensions: 3139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 2571
Number of HSP's gapped (non-prelim): 696
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.