BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo sapiens] (320 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo s... 645 0.0 gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 565 e-161 gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 355 4e-98 gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 354 5e-98 gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 349 2e-96 gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 347 1e-95 gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 313 1e-85 gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] 290 2e-78 gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 ... 147 9e-36 gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 ... 144 1e-34 gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2... 144 1e-34 gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4... 143 2e-34 gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 ... 134 1e-31 gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [... 129 3e-30 gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 ... 129 3e-30 gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 59 8e-09 gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 58 1e-08 gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 55 8e-08 gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 55 8e-08 gi|38201714 ELAV-like 1 [Homo sapiens] 53 4e-07 gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 52 5e-07 gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 52 5e-07 gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 52 5e-07 gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 52 5e-07 gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 52 5e-07 gi|4506447 RNA binding motif, single stranded interacting protei... 52 7e-07 gi|8400718 RNA binding motif, single stranded interacting protei... 50 2e-06 gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 49 6e-06 gi|51317355 RNA binding motif, single stranded interacting prote... 49 8e-06 gi|51317351 RNA binding motif, single stranded interacting prote... 49 8e-06 >gi|225579097 bruno-like 5, RNA binding protein isoform 2 [Homo sapiens] Length = 320 Score = 645 bits (1663), Expect = 0.0 Identities = 320/320 (100%), Positives = 320/320 (100%) Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK Sbjct: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT Sbjct: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA Sbjct: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180 Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE Sbjct: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240 Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF Sbjct: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHF 300 Query: 301 LQGVYGSSYQPEQVFRLREL 320 LQGVYGSSYQPEQVFRLREL Sbjct: 301 LQGVYGSSYQPEQVFRLREL 320 >gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sapiens] Length = 485 Score = 565 bits (1456), Expect = e-161 Identities = 282/282 (100%), Positives = 282/282 (100%) Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK Sbjct: 115 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT Sbjct: 175 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 234 Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA Sbjct: 235 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 294 Query: 181 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 240 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE Sbjct: 295 PASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAE 354 Query: 241 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG Sbjct: 355 TLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 396 Score = 36.6 bits (83), Expect = 0.031 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 13 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFSSHT 71 + G LF+ L ++ + ++ ++F PFG +I + SK FV F + Sbjct: 393 QREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPA 452 Query: 72 EAQAAIHALHGSQ 84 AQAAI A++G Q Sbjct: 453 SAQAAIQAMNGFQ 465 >gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo sapiens] Length = 448 Score = 355 bits (910), Expect = 4e-98 Identities = 184/287 (64%), Positives = 222/287 (77%), Gaps = 8/287 (2%) Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 M RPIQVKPADSESRG DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+LRGPDG+SK Sbjct: 124 MNRPIQVKPADSESRG-EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 182 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 GCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM GQ+G+ Sbjct: 183 GCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAGQMGMFN 242 Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAVSLNGLPATP 178 P + +PF Y AYAQALMQQQ ++++ G YL+P AF+ +QQ+ A+++NGL A P Sbjct: 243 P-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNMNGLAAAP 301 Query: 179 IAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPT 237 + P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ PYPAQSPT Sbjct: 302 MTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHPYPAQSPT 361 Query: 238 VAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282 A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG Sbjct: 362 AADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 407 >gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sapiens] Length = 486 Score = 354 bits (909), Expect = 5e-98 Identities = 185/296 (62%), Positives = 224/296 (75%), Gaps = 16/296 (5%) Query: 1 MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51 M RPIQVKPADSESRGG +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+ Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183 Query: 52 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111 LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243 Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLST--SGSYLSPGVAFSPCHIQQIGAV 169 M GQ+G+ P + +PF Y AYAQALMQQQ ++++ G YL+P AF+ +QQ+ A+ Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQALMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAAL 302 Query: 170 SLNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGL 228 ++NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ Sbjct: 303 NMNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGI 362 Query: 229 VPYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282 PYPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG Sbjct: 363 HPYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 417 >gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo sapiens] Length = 485 Score = 349 bits (896), Expect = 2e-96 Identities = 183/295 (62%), Positives = 221/295 (74%), Gaps = 15/295 (5%) Query: 1 MARPIQVKPADSESRGG---------RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTV 51 M RPIQVKPADSESRGG +DRKLFVGMLNKQQSE+DV RLF+ FG I+ECT+ Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTI 183 Query: 52 LRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQ 111 LRGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQ Sbjct: 184 LRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQ 243 Query: 112 MVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVS 170 M GQ+G+ P + +PF Y AYAQA+ QQ + S + G YL+P AF+ +QQ+ A++ Sbjct: 244 MAGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALN 302 Query: 171 LNGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLV 229 +NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ Sbjct: 303 MNGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIH 362 Query: 230 PYPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282 PYPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG Sbjct: 363 PYPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 416 >gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo sapiens] Length = 484 Score = 347 bits (889), Expect = 1e-95 Identities = 182/294 (61%), Positives = 219/294 (74%), Gaps = 14/294 (4%) Query: 1 MARPIQVKPADSESRGGRD--------RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 52 M RPIQVKPADSESRGG RKLFVGMLNKQQSE+DV RLF+ FG I+ECT+L Sbjct: 124 MNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 183 Query: 53 RGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQM 112 RGPDG+SKGCAFVK+SSH EAQAAI+ALHGSQTMPGASSSLVVKFADTDKERT+RRMQQM Sbjct: 184 RGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTMRRMQQM 243 Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSL 171 GQ+G+ P + +PF Y AYAQA+ QQ + S + G YL+P AF+ +QQ+ A+++ Sbjct: 244 AGQMGMFNP-MAIPFGAYGAYAQAMQQQAALMASVAQGGYLNPMAAFAAAQMQQMAALNM 302 Query: 172 NGLPATPIAPASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVP 230 NGL A P+ P SG +PP + AVP + +PI NGF G+ P G PA E V+ANG+ P Sbjct: 303 NGLAAAPMTPTSGGSTPPGITAPAVPSIPSPIGVNGFTGLPPQANGQPAAEAVFANGIHP 362 Query: 231 YPAQSPTVAETLHPAFSGVQQYT--AMYPTAAITPIAHSVPQPPPLLQQQQREG 282 YPAQSPT A+ L A++GVQQY A YP AA I+ + PQPPP++ QQQREG Sbjct: 363 YPAQSPTAADPLQQAYAGVQQYAGPAAYP-AAYGQISQAFPQPPPMIPQQQREG 415 >gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] Length = 465 Score = 313 bits (802), Expect = 1e-85 Identities = 163/280 (58%), Positives = 205/280 (73%), Gaps = 5/280 (1%) Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 M RPIQVKPADSESRG DRKLFVGML KQQ++EDV ++F+PFG IDECTVLRGPDG+SK Sbjct: 77 MNRPIQVKPADSESRG-EDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 GCAFVKF +H EAQAAI+ LH S+T+PGASSSLVVKFADT+KER LRRMQQ+ QLG+ + Sbjct: 136 GCAFVKFQTHAEAQAAINTLHSSRTLPGASSSLVVKFADTEKERGLRRMQQVATQLGMFS 195 Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIA 180 P + L F YSAY QALMQQQ +++ +YLSP + +Q + A++ NGL ATPI Sbjct: 196 P-IALQFGAYSAYTQALMQQQAALVAAHSAYLSPMATMAAVQMQHMAAINANGLIATPIT 254 Query: 181 PASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV- 238 P+SG +PP + T V + A + NG++ V P G PA + +Y NG+ PYPAQSP Sbjct: 255 PSSGTSTPPAIAATPVSAIPAALGVNGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAP 314 Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQ 278 + L A++G+Q YTA YP AA + +A + PQPP L+ QQ Sbjct: 315 VDPLQQAYAGMQHYTAAYP-AAYSLVAPAFPQPPALVAQQ 353 Score = 39.7 bits (91), Expect = 0.004 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 6 QVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCA 63 Q + + R G D +F+ L ++ ++ ++L++F PFG VI + SK Sbjct: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424 Query: 64 FVKFSSHTEAQAAIHALHGSQ 84 FV F + AQAAI A++G Q Sbjct: 425 FVSFDNPASAQAAIQAMNGFQ 445 >gi|70780381 bruno-like 6, RNA binding protein [Homo sapiens] Length = 481 Score = 290 bits (741), Expect = 2e-78 Identities = 164/284 (57%), Positives = 191/284 (67%), Gaps = 9/284 (3%) Query: 1 MARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60 M RPIQVKPA SE RG DRKLFVGML KQQ EEDV RLFQPFG I+ECTVLR PDG+SK Sbjct: 116 MNRPIQVKPAASEGRG-EDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILT 120 GCAFVKF S EAQAAI LHGS+TM GASSSLVVK ADTD+ER LRRMQQM G LG Sbjct: 175 GCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRRMQQMAGHLGAFH 234 Query: 121 PSLTLPFSPYSAYAQALMQQQTTVLSTS-GSYLSPGVAFSPCHIQQIGAVSLNGLPATPI 179 P+ LP AY A++Q Q +L+ + G L P VA +Q + A S L A P+ Sbjct: 235 PA-PLPLGACGAYTTAILQHQAALLAAAQGPGLGP-VAAVAAQMQHVAAFS---LVAAPL 289 Query: 180 APASGLHSPPLLGTTAVPGLVAPI-TNGFAGVVPFPGGHPALETVYANGLVPYPAQSPTV 238 PA+ +SPP G +PGL API NGF + P G P +T+Y NGL PYPAQSP V Sbjct: 290 LPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYNNGLSPYPAQSPGV 349 Query: 239 AETLHPAFSGVQQYTAMYPTAAITPIAHSVPQPPPLLQQQQREG 282 A+ L A++G+ Y A YP +A P++ + PQ P L QQQREG Sbjct: 350 ADPLQQAYAGMHHYAAAYP-SAYAPVSTAFPQQPSALPQQQREG 392 Score = 59.7 bits (143), Expect = 3e-09 Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHA 79 KLFVG + + E+D+ LF+ FG I E TVL+ G KGCAF+ + + A A A Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106 Query: 80 LHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLG 117 LH +T+PG + + VK A ++ R++ VG LG Sbjct: 107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKL--FVGMLG 142 Score = 37.0 bits (84), Expect = 0.023 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 2 ARPIQVKPADSESRGGRDR-KLFVGMLNKQQSEEDVLRLFQPFGVIDECTV-LRGPDGSS 59 A P Q + R G + LF+ L ++ + ++++ F PFG + V + S Sbjct: 377 AFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQS 436 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQ 84 K FV F + T AQ AI A++G Q Sbjct: 437 KCFGFVSFDNPTSAQTAIQAMNGFQ 461 >gi|68303647 CUG triplet repeat, RNA binding protein 2 isoform 3 [Homo sapiens] Length = 508 Score = 147 bits (372), Expect = 9e-36 Identities = 124/350 (35%), Positives = 164/350 (46%), Gaps = 77/350 (22%) Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S Sbjct: 112 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 171 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115 +GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q Sbjct: 172 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 231 Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138 LG LTP L + A A Sbjct: 232 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 291 Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197 QT+ ST+ + LS + +GA++ +TP + A + ++S LGT + Sbjct: 292 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 342 Query: 198 GLVAPIT-----NGFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQY 252 GL N AG+ GG A T NG + + L A+SG+QQY Sbjct: 343 GLAGATVGLNNINALAGMAALNGGLGA--TGLTNG-------TAGTMDALTQAYSGIQQY 393 Query: 253 TAMYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302 AA P +S LLQQQ G + G + L YH Q Sbjct: 394 -----AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 432 Score = 64.3 bits (155), Expect = 1e-10 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A Sbjct: 41 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 100 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH +T+PG + +K AD++K + + +G + Sbjct: 101 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 139 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F Sbjct: 409 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 468 Query: 65 VKFSSHTEAQAAIHALHGSQ 84 V + + AQAAI A++G Q Sbjct: 469 VSYDNPVSAQAAIQAMNGFQ 488 >gi|68303645 CUG triplet repeat, RNA binding protein 2 isoform 1 [Homo sapiens] Length = 490 Score = 144 bits (363), Expect = 1e-34 Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%) Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S Sbjct: 88 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115 +GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207 Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138 LG LTP L + A A Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267 Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196 QT+ ST+ + LS + +GA++ +TP + A + ++S LGT + Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 320 Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254 G + N V G AL + A GL A + + L A+SG+QQY Sbjct: 321 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 375 Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302 AA P +S LLQQQ G + G + L YH Q Sbjct: 376 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 414 Score = 64.3 bits (155), Expect = 1e-10 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH +T+PG + +K AD++K + + +G + Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F Sbjct: 391 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 450 Query: 65 VKFSSHTEAQAAIHALHGSQ 84 V + + AQAAI A++G Q Sbjct: 451 VSYDNPVSAQAAIQAMNGFQ 470 >gi|134152680 CUG triplet repeat, RNA binding protein 2 isoform 2 [Homo sapiens] Length = 521 Score = 144 bits (363), Expect = 1e-34 Identities = 123/348 (35%), Positives = 164/348 (47%), Gaps = 67/348 (19%) Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S Sbjct: 119 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 178 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115 +GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q Sbjct: 179 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 238 Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138 LG LTP L + A A Sbjct: 239 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 298 Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGT-TAV 196 QT+ ST+ + LS + +GA++ +TP + A + ++S LGT + Sbjct: 299 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGTLQGL 351 Query: 197 PGLVAPITN-GFAGVVPFPGGHPALE-TVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254 G + N V G AL + A GL A + + L A+SG+QQY Sbjct: 352 AGATVGLNNINALAVAQMLSGMAALNGGLGATGLTNGTAGT---MDALTQAYSGIQQY-- 406 Query: 255 MYPTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302 AA P +S LLQQQ G + G + L YH Q Sbjct: 407 ---AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 445 Score = 64.3 bits (155), Expect = 1e-10 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A Sbjct: 48 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 107 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH +T+PG + +K AD++K + + +G + Sbjct: 108 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 146 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F Sbjct: 422 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 481 Query: 65 VKFSSHTEAQAAIHALHGSQ 84 V + + AQAAI A++G Q Sbjct: 482 VSYDNPVSAQAAIQAMNGFQ 501 >gi|134152719 CUG triplet repeat, RNA binding protein 2 isoform 4 [Homo sapiens] Length = 488 Score = 143 bits (361), Expect = 2e-34 Identities = 120/346 (34%), Positives = 163/346 (47%), Gaps = 65/346 (18%) Query: 1 MARPIQVKPADSE-SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE S DRKLF+GM++K+ +E D+ +F PFG I+EC +LRGPDG S Sbjct: 88 MHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS 147 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115 +GCAFV FS+ AQ AI A+H SQTM G SS +VVKFADT K++ RR+QQ + Q Sbjct: 148 RGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQKDKEQRRLQQQLAQQMQQ 207 Query: 116 -----------LGILTPSL--------------------------TLPFSPYSAYAQALM 138 LG LTP L + A A Sbjct: 208 LNTATWGNLTGLGGLTPQYLALLQQATSSSNLGAFSGIQQMAGMNALQLQNLATLAAAAA 267 Query: 139 QQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPA-SGLHSPPLLGTTAVP 197 QT+ ST+ + LS + +GA++ +TP + A + ++S LGT + Sbjct: 268 AAQTSATSTNANPLSTTSS-------ALGALTSPVAASTPNSTAGAAMNSLTSLGT--LQ 318 Query: 198 GLVAPITNGFAGVVPFPGGHPALETVYAN-GLVPYPAQSPTVAETLHPAFSGVQQYTAMY 256 GL A T G + G ++ + G + + L A+SG+QQY Sbjct: 319 GL-AGATVGLNNINALAGTINSMAALNGGLGATGLTNGTAGTMDALTQAYSGIQQY---- 373 Query: 257 PTAAITPIAHSVPQPPPLLQQQQREGVWRHGADADVPTLRQYHFLQ 302 AA P +S LLQQQ G + G + L YH Q Sbjct: 374 -AAAALPTLYS----QSLLQQQSAAGSQKEGPEG--ANLFIYHLPQ 412 Score = 64.3 bits (155), Expect = 1e-10 Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+++ LF+P+G + + VLR + SKGC FV F + A A Sbjct: 17 KMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH +T+PG + +K AD++K + + +G + Sbjct: 77 NALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMV 115 Score = 45.4 bits (106), Expect = 7e-05 Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 6 QVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 Q A S+ G LF+ L ++ ++D+L++F PFG VI + SK F Sbjct: 389 QQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGF 448 Query: 65 VKFSSHTEAQAAIHALHGSQ 84 V + + AQAAI A++G Q Sbjct: 449 VSYDNPVSAQAAIQAMNGFQ 468 >gi|71164871 CUG triplet repeat, RNA-binding protein 1 isoform 3 [Homo sapiens] Length = 486 Score = 134 bits (336), Expect = 1e-31 Identities = 100/293 (34%), Positives = 142/293 (48%), Gaps = 48/293 (16%) Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ---- 115 +GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQQMQQ 207 Query: 116 ------LGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAV 169 G L TL + Y Q L Q ++ + S L P + +Q + A+ Sbjct: 208 ISAASVWGNLAGLNTLGPQYLALYLQLLQQTASSGNLNTLSSLHPMGGLNAMQLQNLAAL 267 Query: 170 SLNGLPA-----------TPIAPASGLHSPPLLGTTAVPGLVAPITN------------- 205 + A T +P S L S +++ V PI + Sbjct: 268 AAAASAAQNTPSGTNALTTSSSPLSVLTSSGSSPSSSSSNSVNPIASLGALQTLAGATAG 327 Query: 206 ----GFAGVVPFPGGHPALETVYANGLVPYPAQSPTVAETLHPAFSGVQQYTA 254 AG+ GG + + +NG + + E L A+SG+QQY A Sbjct: 328 LNVGSLAGMAALNGGLGS--SGLSNG-------TGSTMEALTQAYSGIQQYAA 371 Score = 62.0 bits (149), Expect = 7e-10 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH + +PG + +K AD++K + + +G + Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68 A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV + Sbjct: 391 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 450 Query: 69 SHTEAQAAIHALHGSQ 84 + AQAAI +++G Q Sbjct: 451 NPVSAQAAIQSMNGFQ 466 >gi|5729794 CUG triplet repeat, RNA-binding protein 1 isoform 1 [Homo sapiens] Length = 482 Score = 129 bits (324), Expect = 3e-30 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%) Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 +GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203 Score = 62.0 bits (149), Expect = 7e-10 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH + +PG + +K AD++K + + +G + Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68 A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV + Sbjct: 387 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 446 Query: 69 SHTEAQAAIHALHGSQ 84 + AQAAI +++G Q Sbjct: 447 NPVSAQAAIQSMNGFQ 462 >gi|38570081 CUG triplet repeat, RNA-binding protein 1 isoform 2 [Homo sapiens] Length = 483 Score = 129 bits (324), Expect = 3e-30 Identities = 63/116 (54%), Positives = 83/116 (71%), Gaps = 1/116 (0%) Query: 1 MARPIQVKPADSESRGG-RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 59 M PIQ+KPADSE DRKLF+GM++K+ +E D+ +F FG I+EC +LRGPDG S Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 147 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 +GCAFV F++ AQ AI A+H +QTM G SS +VVKFADT K++ +RM Q + Q Sbjct: 148 RGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQKDKEQKRMAQQLQQ 203 Score = 62.0 bits (149), Expect = 7e-10 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 21 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGS---SKGCAFVKFSSHTEAQAAI 77 K+FVG + + SE+D+ LF+ +G + E VLR + SKGC FV F + A A Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76 Query: 78 HALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQL 116 +ALH + +PG + +K AD++K + + +G + Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMI 115 Score = 42.4 bits (98), Expect = 6e-04 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query: 10 ADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAFVKFS 68 A S+ G LF+ L ++ ++D+L++F PFG V+ + SK FV + Sbjct: 388 AGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYD 447 Query: 69 SHTEAQAAIHALHGSQ 84 + AQAAI +++G Q Sbjct: 448 NPVSAQAAIQSMNGFQ 463 >gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) [Homo sapiens] Length = 359 Score = 58.5 bits (140), Expect = 8e-09 Identities = 50/180 (27%), Positives = 83/180 (46%), Gaps = 18/180 (10%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG 167 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP 121 F++F EA+ AI L+G Q PGA+ + VKFA+ ++T + + + Q Sbjct: 168 VGFIRFDKRIEAEEAIKGLNG-QKPPGATEPITVKFANNPSQKTNQAILSQLYQ------ 220 Query: 122 SLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPGV-AFSPCHIQ---QIGAVSLNGLPAT 177 SP Y L QQ + ++ GV FSP I + +++ G P T Sbjct: 221 ------SPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGT 274 Score = 40.8 bits (94), Expect = 0.002 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 13/130 (10%) Query: 9 PADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKF 67 P DS + L V L + ++E++ LF G I+ C ++R G S G FV + Sbjct: 28 PVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNY 87 Query: 68 SSHTEAQAAIHALHG----------SQTMPGASS--SLVVKFADTDKERTLRRMQQMVGQ 115 +A+ AI+ L+G S P ++S + + K T + ++Q+ Q Sbjct: 88 IDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQ 147 Query: 116 LGILTPSLTL 125 G + S L Sbjct: 148 YGRIITSRIL 157 Score = 33.1 bits (74), Expect = 0.34 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L E + ++F PFG + V+R KG FV +++ EA AI +L Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337 Query: 81 HG 82 +G Sbjct: 338 NG 339 >gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] Length = 424 Score = 58.2 bits (139), Expect = 1e-08 Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 23/233 (9%) Query: 3 RPIQVKPADSESRG-GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT-VLRGPD-GSS 59 +PI+V A + ++ +F+G L+ + E+ + F FGVI + ++R PD G+S Sbjct: 82 KPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS 141 Query: 60 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGIL 119 KG AF+ F+S + AAI A++G + + V +A + R L Sbjct: 142 KGYAFINFASFDASDAAIEAMNGQYL---CNRPITVSYAFKKDSKGERHGSAAERLLAAQ 198 Query: 120 TPSLTLPFSPYSAYAQA--LMQQQTTVLSTSGSYL----SPGVAFSPCHIQQIGAVSLN- 172 P L+ P+ +A A V+S+ GS L P P + GA+ Sbjct: 199 NP-LSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGI 257 Query: 173 --GLPATPIAPASGLHSPPLLGTTAVPGLVAPITNGFAGVVPFPGG---HPAL 220 +P P+ P + H PP GT PG P +G + PFP G HP + Sbjct: 258 PPAMPPPPMPPGAAGHGPPSAGT---PGAGHP-GHGHSHPHPFPPGGMPHPGM 306 >gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] Length = 367 Score = 55.1 bits (131), Expect = 8e-08 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K S++++ +LF +G +I ++ G S+G Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105 F++F EA+ AI L+G + + GA+ + VKFA+ ++T Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ + E + +LF PFG + V+R KG FV +++ EA AI +L Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345 Query: 81 HG 82 +G Sbjct: 346 NG 347 >gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] Length = 360 Score = 55.1 bits (131), Expect = 8e-08 Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K S++++ +LF +G +I ++ G S+G Sbjct: 108 KTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRG 167 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERT 105 F++F EA+ AI L+G + + GA+ + VKFA+ ++T Sbjct: 168 VGFIRFDKRIEAEEAIKGLNGQKPL-GAAEPITVKFANNPSQKT 210 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ + E + +LF PFG + V+R KG FV +++ EA AI +L Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338 Query: 81 HG 82 +G Sbjct: 339 NG 340 >gi|38201714 ELAV-like 1 [Homo sapiens] Length = 326 Score = 52.8 bits (125), Expect = 4e-07 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 2/98 (2%) Query: 2 ARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSK 60 ++ I+V A S +D L++ L + +++DV +F FG +I+ ++ G S+ Sbjct: 88 SKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSR 147 Query: 61 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 98 G AF++F +EA+ AI + +G + PG+S + VKFA Sbjct: 148 GVAFIRFDKRSEAEEAITSFNGHKP-PGSSEPITVKFA 184 Score = 33.5 bits (75), Expect = 0.26 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +F+ L + E + ++F PFG + V+R KG FV +++ EA AI +L Sbjct: 246 IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 305 Query: 81 HG 82 +G Sbjct: 306 NG 307 >gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] Length = 380 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358 Query: 81 HG 82 +G Sbjct: 359 NG 360 >gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] Length = 369 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 118 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 177 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q Sbjct: 178 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 230 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347 Query: 81 HG 82 +G Sbjct: 348 NG 349 >gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] Length = 366 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344 Query: 81 HG 82 +G Sbjct: 345 NG 346 >gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] Length = 383 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 132 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 191 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q Sbjct: 192 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 244 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361 Query: 81 HG 82 +G Sbjct: 362 NG 363 >gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] Length = 366 Score = 52.4 bits (124), Expect = 5e-07 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 2/114 (1%) Query: 3 RPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKG 61 + I+V A S RD L+V L K +++++ +LF +G +I ++ G S+G Sbjct: 115 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 174 Query: 62 CAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQ 115 F++F EA+ AI L+G Q GA+ + VKFA+ +++ + + + Q Sbjct: 175 VGFIRFDKRIEAEEAIKGLNG-QKPSGATEPITVKFANNPSQKSSQALLSQLYQ 227 Score = 36.2 bits (82), Expect = 0.040 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-PDGSSKGCAFVKFSSHTEAQAAIHAL 80 +FV L+ E + +LF PFG ++ V+R KG FV +++ EA AI +L Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344 Query: 81 HG 82 +G Sbjct: 345 NG 346 >gi|4506447 RNA binding motif, single stranded interacting protein 1 isoform c [Homo sapiens] Length = 403 Score = 52.0 bits (123), Expect = 7e-07 Identities = 54/234 (23%), Positives = 92/234 (39%), Gaps = 58/234 (24%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81 L++ L E+++ + +PFG + +LR G+S+G F + S + +A I + Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202 Query: 82 GS--QTMPGASS---SLVVKFADTDKERTLR--------RMQQMVGQLGI---------- 118 G +T PG S+ L+ KFAD +++ R G+ G+ Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEAGMTLTYDPTTAA 262 Query: 119 ----------------------LTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLSPG- 155 +TP + P S Y + + MQ Q +L G+ L+P Sbjct: 263 IQNGFYPSPYSIATNRMITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSM 322 Query: 156 ---VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197 ++ P + QQ+ +SL +PAT + L + TTAVP Sbjct: 323 EHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 376 Score = 43.9 bits (102), Expect = 2e-04 Identities = 67/298 (22%), Positives = 110/298 (36%), Gaps = 35/298 (11%) Query: 10 ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 + S S G D+ L++ L +++D+++L QP+G ++ +L KG F Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107 Query: 65 VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112 V F S AQ A+ AL S + S+L + + + E L+ Q+ Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167 Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166 + IL S A ++ + + + +G ++ PGV+ C Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226 Query: 167 GAVSLNGLPATPIAPASGLHSPPLLGTTAV-PGLVAPITNGFAGVVPFPGGHPALETVYA 225 G P I H G T A I NGF P P + Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEAGMTLTYDPTTAAIQNGF---YPSPYSIATNRMITQ 282 Query: 226 NGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQQ 277 + PY A + + P++ Q Y +P A +TP + H++ P PL QQ Sbjct: 283 TSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQQ 340 >gi|8400718 RNA binding motif, single stranded interacting protein 1 isoform a [Homo sapiens] Length = 406 Score = 50.4 bits (119), Expect = 2e-06 Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 63/238 (26%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81 L++ L E+++ + +PFG + +LR G+S+G F + S + +A I + Sbjct: 143 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 202 Query: 82 GS--QTMPGASS---SLVVKFADTDKER-------------------------------T 105 G +T PG S+ L+ KFAD +++ T Sbjct: 203 GKFIKTPPGVSAPTEPLLCKFADGGQKKRQNPNKYIPNGRPWHREGEVRLAGMTLTYDPT 262 Query: 106 LRRMQ-------------QMVGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYL 152 +Q +M+ Q I TP + P S Y + + MQ Q +L G+ L Sbjct: 263 TAAIQNGFYPSPYSIATNRMITQTSI-TPYIASPVSAYQVQSPSWMQPQPYILQHPGAVL 321 Query: 153 SPG----VAFSPCHI-----QQIGAVSLNG----LPATPIAPASGLHSPPLLGTTAVP 197 +P ++ P + QQ+ +SL +PAT + L + TTAVP Sbjct: 322 TPSMEHTMSLQPASMISPLAQQMSHLSLGSTGTYMPATSAMQGAYLPQYAHMQTTAVP 379 Score = 41.2 bits (95), Expect = 0.001 Identities = 68/301 (22%), Positives = 111/301 (36%), Gaps = 38/301 (12%) Query: 10 ADSESRGGRDR----KLFVGMLNKQQSEEDVLRLFQPFG-VIDECTVLRGPDGSSKGCAF 64 + S S G D+ L++ L +++D+++L QP+G ++ +L KG F Sbjct: 48 SSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGF 107 Query: 65 VKFSSHTEAQAAIHALHGSQTMPGAS------------SSLVVKFADTDKERTLRRMQQM 112 V F S AQ A+ AL S + S+L + + + E L+ Q+ Sbjct: 108 VDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQV 167 Query: 113 VGQLGILTPSLTLPFSPYSAYAQALMQQQTTVLSTSGSYLS--PGVAFSP----CHIQQI 166 + IL S A ++ + + + +G ++ PGV+ C Sbjct: 168 ISTR-ILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFADG 226 Query: 167 GAVSLNGLPATPIAPASGLHSPP---LLGTTAV-PGLVAPITNGFAGVVPFPGGHPALET 222 G P I H L G T A I NGF P P Sbjct: 227 GQKKRQN-PNKYIPNGRPWHREGEVRLAGMTLTYDPTTAAIQNGF---YPSPYSIATNRM 282 Query: 223 VYANGLVPYPAQSPTVAETLHPAFSGVQQYTAMYPTAAITP-IAHSVPQPP-----PLLQ 276 + + PY A + + P++ Q Y +P A +TP + H++ P PL Q Sbjct: 283 ITQTSITPYIASPVSAYQVQSPSWMQPQPYILQHPGAVLTPSMEHTMSLQPASMISPLAQ 342 Query: 277 Q 277 Q Sbjct: 343 Q 343 >gi|188219593 TIA1 protein isoform 1 [Homo sapiens] Length = 375 Score = 48.9 bits (115), Expect = 6e-06 Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 15/163 (9%) Query: 20 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHA 79 + L+VG L++ +E +L+LF G C ++ G+ C FV+F H A AA+ A Sbjct: 7 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYC-FVEFHEHRHAAAALAA 65 Query: 80 LHGSQTMPGASSSLVVKFADT---DKERTLRRMQQMVGQLG--ILTPSLTLPFSPYSAYA 134 ++G + M + V +A T K+ T VG L I T + F+P+ + Sbjct: 66 MNGRKIM---GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRIS 122 Query: 135 QALMQQQTTVLSTSG----SYLSPGVAFSPCHIQQIGAVSLNG 173 A + + + G S+ + A + IQQ+G L G Sbjct: 123 DARVVKDMATGKSKGYGFVSFFNKWDAENA--IQQMGGQWLGG 163 Score = 42.7 bits (99), Expect = 4e-04 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%) Query: 1 MARPIQVKPADSESRGGRDRK----LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRG-P 55 M + ++V A + S +D +FVG L+ + + ED+ F PFG I + V++ Sbjct: 72 MGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMA 131 Query: 56 DGSSKGCAFVKFSSHTEAQAAIHALHG 82 G SKG FV F + +A+ AI + G Sbjct: 132 TGKSKGYGFVSFFNKWDAENAIQQMGG 158 Score = 35.0 bits (79), Expect = 0.089 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81 ++ G + +E+ + + F PFG I E V PD KG +FV+F+SH A AI +++ Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVF--PD---KGYSFVRFNSHESAAHAIVSVN 259 Query: 82 GS 83 G+ Sbjct: 260 GT 261 >gi|51317355 RNA binding motif, single stranded interacting protein 3 isoform 1 [Homo sapiens] Length = 437 Score = 48.5 bits (114), Expect = 8e-06 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81 L++ L E+++ + +PFG + +LR +G S+G F + S + + I + Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201 Query: 82 GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131 G +P S L+ KFAD +++ R+ Q Q G P + L + P + Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259 Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188 A ++ + + ++P +A SP Q+ + S P + P + +P Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319 Query: 189 PL 190 + Sbjct: 320 TM 321 >gi|51317351 RNA binding motif, single stranded interacting protein 3 isoform 2 [Homo sapiens] Length = 420 Score = 48.5 bits (114), Expect = 8e-06 Identities = 39/182 (21%), Positives = 76/182 (41%), Gaps = 15/182 (8%) Query: 22 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 81 L++ L E+++ + +PFG + +LR +G S+G F + S + + I + Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVIQHFN 201 Query: 82 GSQT-----MPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTP-----SLTLPFSPYS 131 G +P S L+ KFAD +++ R+ Q Q G P + L + P + Sbjct: 202 GKYLKTPPGIPAPSEPLLCKFADGGQKK--RQNQSKYTQNGRPWPREGEAGMALTYDPTA 259 Query: 132 AYAQALMQQQTTVLST---SGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSP 188 A ++ + + ++P +A SP Q+ + S P + P + +P Sbjct: 260 AIQNGFYSSPYSIATNRMIPQTSITPFIAASPVSTYQVQSTSWMPHPPYVMQPTGAVITP 319 Query: 189 PL 190 + Sbjct: 320 TM 321 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.133 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 13,798,550 Number of Sequences: 37866 Number of extensions: 722344 Number of successful extensions: 3139 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 272 Number of HSP's that attempted gapping in prelim test: 2571 Number of HSP's gapped (non-prelim): 696 length of query: 320 length of database: 18,247,518 effective HSP length: 102 effective length of query: 218 effective length of database: 14,385,186 effective search space: 3135970548 effective search space used: 3135970548 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.