Guide to the Human Genome
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Name: CRYL1 Sequence: fasta or formatted (319aa) NCBI GI: 115430219
Description:

lambda-crystallin

Referenced in:

Crystallins and Other Eye Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         24           2
 C cysteine            2.8          9           1
 D aspartate           4.1         13           2
 E glutamate           7.8         25           2
 F phenylalanine       2.5          8           1
 G glycine             6.3         20           2
 H histidine           2.5          8           1
 I isoleucine          6.6         21           2
 K lysine              5.3         17           3
 L leucine            10.3         33           2
 M methionine          4.4         14           1
 N asparagine          2.2          7           1
 P proline             5.6         18           2
 Q glutamine           6.0         19           3
 R arginine            4.7         15           2
 S serine              7.5         24           3
 T threonine           2.5          8           2
 V valine              8.2         26           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.2          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lambda-crystallin 
HADH                  0.108   L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor [...
EHHADH                0.078   enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...
HADHA                 0.059   mitochondrial trifunctional protein, alpha subunit p...
SYCP1                 0.013   synaptonemal complex protein 1 
SLFN5                 0.011   schlafen family member 5 
IGHMBP2               0.010   immunoglobulin mu binding protein 2 
CLIP1                 0.010   restin isoform b 
CLIP1                 0.010   restin isoform a 
FSIP1                 0.008   fibrous sheath interacting protein 1 
NSDHL                 0.008   NAD(P) dependent steroid dehydrogenase-like 
NSDHL                 0.008   NAD(P) dependent steroid dehydrogenase-like 
HAUS7                 0.007   UCH interacting protein 1 isoform b 
HAUS7                 0.007   UCH interacting protein 1 isoform a 
CEP290                0.007   centrosomal protein 290kDa 
SLFN11                0.007   schlafen family member 11 
SLFN11                0.007   schlafen family member 11 
SLFN11                0.007   schlafen family member 11 
SLFN11                0.007   schlafen family member 11 
SLFN11                0.007   schlafen family member 11 
PYROXD1               0.007   pyridine nucleotide-disulphide oxidoreductase domain...
NAF1                  0.007   nuclear assembly factor 1 homolog isoform b 
NAF1                  0.007   nuclear assembly factor 1 homolog isoform a 
CCDC88C               0.007   DVL-binding protein DAPLE 
MOCS3                 0.005   molybdenum cofactor synthesis 3 
TNPO1                 0.005   transportin 1 isoform 2 
TNPO1                 0.005   transportin 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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