Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLFN5 Sequence: fasta or formatted (891aa) NCBI GI: 145580600
Description:

schlafen family member 5

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         49           3
 C cysteine            3.0         27           2
 D aspartate           4.4         39           2
 E glutamate           6.3         56           2
 F phenylalanine       4.2         37           2
 G glycine             5.4         48           3
 H histidine           2.4         21           2
 I isoleucine          5.8         52           3
 K lysine              6.6         59           2
 L leucine            11.2        100           3
 M methionine          1.9         17           2
 N asparagine          5.2         46           2
 P proline             5.1         45           3
 Q glutamine           4.9         44           2
 R arginine            5.3         47           1
 S serine              6.8         61           2
 T threonine           4.3         38           1
 V valine              7.2         64           2
 W tryptophan          1.0          9           1
 Y tyrosine            3.6         32           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   schlafen family member 5 
SLFN13                0.464   schlafen family member 13 
SLFN11                0.464   schlafen family member 11 
SLFN11                0.464   schlafen family member 11 
SLFN11                0.464   schlafen family member 11 
SLFN11                0.464   schlafen family member 11 
SLFN11                0.464   schlafen family member 11 
SLFN14                0.369   schlafen family member 14 
SLFN12                0.240   schlafen family member 12 
SLFN12L               0.234   schlafen family member 12-like 
MYH8                  0.004   myosin, heavy chain 8, skeletal muscle, perinatal [...
CRYL1                 0.004   lambda-crystallin 
PEX6                  0.004   peroxisomal biogenesis factor 6 
AK5                   0.003   adenylate kinase 5 isoform 1 
AK5                   0.003   adenylate kinase 5 isoform 2 
TRO                   0.003   trophinin isoform 2 
TRO                   0.003   trophinin isoform 2 
NLRP8                 0.003   NLR family, pyrin domain containing 8 
RIMS2                 0.003   regulating synaptic membrane exocytosis 2 isoform a...
RIMS2                 0.003   regulating synaptic membrane exocytosis 2 isoform b...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press