Guide to the Human Genome
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Name: HADH Sequence: fasta or formatted (314aa) NCBI GI: 94557308
Description:

L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor

Referenced in:

Crystallins and Other Eye Proteins
Fatty Acid Oxidation and Ketone Bodies

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         30           3
 C cysteine            0.3          1           1
 D aspartate           5.1         16           1
 E glutamate           6.4         20           2
 F phenylalanine       5.4         17           2
 G glycine             6.4         20           3
 H histidine           2.5          8           1
 I isoleucine          5.1         16           2
 K lysine              9.9         31           3
 L leucine             8.3         26           2
 M methionine          2.9          9           1
 N asparagine          3.2         10           1
 P proline             3.5         11           1
 Q glutamine           2.2          7           1
 R arginine            2.9          9           1
 S serine              7.6         24           4
 T threonine           7.6         24           2
 V valine              8.9         28           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   L-3-hydroxyacyl-Coenzyme A dehydrogenase precursor [... 
HADHA                 0.233   mitochondrial trifunctional protein, alpha subunit p...
EHHADH                0.181   enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A...
CRYL1                 0.112   lambda-crystallin 
SEC14L1               0.012   SEC14 (S. cerevisiae)-like 1 isoform c 
SEC14L1               0.012   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.012   SEC14 (S. cerevisiae)-like 1 isoform a 
CAMK2B                0.012   calcium/calmodulin-dependent protein kinase II beta ...
SEC14L1               0.012   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.012   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L5               0.012   SEC14-like 5 
CCDC36                0.009   coiled-coil domain containing 36 
CCDC36                0.009   coiled-coil domain containing 36 
SMARCC2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.009   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.009   SWI/SNF-related matrix-associated actin-dependent r...
CLIP2                 0.009   CAP-GLY domain containing linker protein 2 isoform ...
CLIP2                 0.009   CAP-GLY domain containing linker protein 2 isoform 2...
LYST                  0.007   lysosomal trafficking regulator 
N-PAC                 0.007   cytokine-like nuclear factor n-pac 
RBKS                  0.005   ribokinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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