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Search of human proteins with 224589135
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224589135 RGM domain family, member B [Homo sapiens]
(478 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224589135 RGM domain family, member B [Homo sapiens] 989 0.0
gi|24308189 RGM domain family, member A [Homo sapiens] 399 e-111
gi|47458048 hemojuvelin isoform a precursor [Homo sapiens] 329 3e-90
gi|44662823 hemojuvelin isoform b [Homo sapiens] 267 1e-71
gi|42544157 hemojuvelin isoform c [Homo sapiens] 166 4e-41
gi|47458050 hemojuvelin isoform c [Homo sapiens] 166 4e-41
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 40 0.004
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 40 0.005
gi|46249414 latent transforming growth factor beta binding prote... 40 0.006
gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens] 40 0.006
gi|169210256 PREDICTED: hypothetical protein [Homo sapiens] 39 0.008
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens] 39 0.010
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 39 0.010
gi|237757310 synaptojanin 1 isoform a [Homo sapiens] 39 0.014
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 39 0.014
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 37 0.039
gi|38788260 bromodomain PHD finger transcription factor isoform ... 37 0.039
gi|38788274 bromodomain PHD finger transcription factor isoform ... 37 0.039
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.052
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 37 0.052
gi|5453936 POU class 3 homeobox 3 [Homo sapiens] 37 0.052
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 36 0.067
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ... 36 0.067
gi|119943102 CREB binding protein isoform b [Homo sapiens] 36 0.088
gi|119943104 CREB binding protein isoform a [Homo sapiens] 36 0.088
gi|40353727 synaptopodin isoform A [Homo sapiens] 36 0.088
gi|13273315 homeobox B4 [Homo sapiens] 36 0.088
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 989 bits (2556), Expect = 0.0
Identities = 478/478 (100%), Positives = 478/478 (100%)
Query: 1 MIRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQ 60
MIRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQ
Sbjct: 1 MIRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQ 60
Query: 61 RRSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHLNSAVDGFDS 120
RRSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHLNSAVDGFDS
Sbjct: 61 RRSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHLNSAVDGFDS 120
Query: 121 EFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPEVTHDPC 180
EFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPEVTHDPC
Sbjct: 121 EFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDGPTSSTNPEVTHDPC 180
Query: 181 NYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQV 240
NYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQV
Sbjct: 181 NYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQV 240
Query: 241 TNVPVVPGSSATATNKITIIFKAHHECTDQKVYQAVTDDLPAAFVDGTTSGGDSDAKSLR 300
TNVPVVPGSSATATNKITIIFKAHHECTDQKVYQAVTDDLPAAFVDGTTSGGDSDAKSLR
Sbjct: 241 TNVPVVPGSSATATNKITIIFKAHHECTDQKVYQAVTDDLPAAFVDGTTSGGDSDAKSLR 300
Query: 301 IVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLS 360
IVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLS
Sbjct: 301 IVERESGHYVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLS 360
Query: 361 ERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT 420
ERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT
Sbjct: 361 ERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT 420
Query: 421 GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVSLGLTCLILIVFL 478
GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVSLGLTCLILIVFL
Sbjct: 421 GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVSLGLTCLILIVFL 478
>gi|24308189 RGM domain family, member A [Homo sapiens]
Length = 450
Score = 399 bits (1024), Expect = e-111
Identities = 208/406 (51%), Positives = 272/406 (66%), Gaps = 41/406 (10%)
Query: 89 CQQPAQ---CRIQKCTTDFVSLTSHLNSAVDGFDSEFCKALRAYAGCTQRTSKACRGNLV 145
C PA C+I KC ++F S TS ++ EFC ALR+YA CT+RT++ CRG+L
Sbjct: 39 CSFPAATSPCKILKCNSEFWSATSGSHAPASDDTPEFCAALRSYALCTRRTARTCRGDLA 98
Query: 146 YHSAVLGISDLMSQRNCSKDGPTS----------------STNPEVTHDPCNYHSHAGAR 189
YHSAV GI DLMSQ NCSKDGPTS S +PE+ H ++H H+
Sbjct: 99 YHSAVHGIEDLMSQHNCSKDGPTSQPRLRTLPPAGDSQERSDSPEICHYEKSFHKHSAT- 157
Query: 190 EHRRGDQNPPSYLFCGLFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGS 249
P+Y CGLFGDPHLRTF D FQTCKV+GAWPLIDNNYL+VQ TN PV+PGS
Sbjct: 158 ---------PNYTHCGLFGDPHLRTFTDRFQTCKVQGAWPLIDNNYLNVQATNTPVLPGS 208
Query: 250 SATATNKITIIFKAHHECTDQKVYQAVTDDLPAAFVDGTTSGGDS-DAKSLRIVERESGH 308
+ATAT+K+TIIFK EC DQKVYQA D+LPAAFVDG+ +GGD A SL+I E+ SG
Sbjct: 209 AATATSKLTIIFKNFQECVDQKVYQAEMDELPAAFVDGSKNGGDKHGANSLKITEKVSGQ 268
Query: 309 YVEMHARYIGTTVFVRQVGRYLTLAIRMPEDLAMSYE--ESQDLQLCVNGCPLSERID-- 364
+VE+ A+YIGTT+ VRQVGRYLT A+RMPE++ + E +SQ L LC+ GCPL+++ID
Sbjct: 269 HVEIQAKYIGTTIVVRQVGRYLTFAVRMPEEVVNAVEDWDSQGLYLCLRGCPLNQQIDFQ 328
Query: 365 ----DGQGQVSAILGHSLPRTSLVQAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTT 420
+ +G + L + P + + +P ETA +C EK+PV+D+Y+Q+CVFDLLTT
Sbjct: 329 AFHTNAEGTGARRLAAASPAPTAPETFP---YETAVAKCKEKLPVEDLYYQACVFDLLTT 385
Query: 421 GDANFTAAAHSALEDVEALHPRKERWHIFPSSGNGTPRGGSDLSVS 466
GD NFT AA+ ALEDV+ LH K++ H++ + + R + L ++
Sbjct: 386 GDVNFTLAAYYALEDVKMLHSNKDKLHLYERTRDLPGRAAAGLPLA 431
>gi|47458048 hemojuvelin isoform a precursor [Homo sapiens]
Length = 426
Score = 329 bits (844), Expect = 3e-90
Identities = 190/444 (42%), Positives = 252/444 (56%), Gaps = 58/444 (13%)
Query: 62 RSPGLCPPPLELLLLLLFSLGLLHAGDCQQPAQCRIQKCTTDFVSLTSHL-----NSAVD 116
RS PP L L LLL G H+ QC+I +C ++VS T L + A+
Sbjct: 11 RSSHGSPPTLSTLTLLLLLCGHAHS-------QCKILRCNAEYVSSTLSLRGGGSSGALR 63
Query: 117 GF----------DSEFCKALRAYAGCTQRTSKACRGNLVYHSAVLGISDLMSQRNCSKDG 166
G C+ALR+YA CT+RT++ CRG+L +HSAV GI DLM Q NCS+ G
Sbjct: 64 GGGGGGRGGGVGSGGLCRALRSYALCTRRTARTCRGDLAFHSAVHGIEDLMIQHNCSRQG 123
Query: 167 PTSSTNPE-----------VTHDPCNYHSHAGAREHRRGDQNPPSYLFCGLFGDPHLRTF 215
PT+ P DPC+Y +R H R PP +L C FGDPH+R+F
Sbjct: 124 PTAPPPPRGPALPGAGSGLPAPDPCDYEGRF-SRLHGR----PPGFLHCASFGDPHVRSF 178
Query: 216 KDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHHECTDQKVYQA 275
+F TC+V+GAWPL+DN++L VQ T+ P+ G++ATAT K+TIIFK EC DQKVYQA
Sbjct: 179 HHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQECIDQKVYQA 238
Query: 276 VTDDLPAAFVDGTTSGGD-SDAKSLRIVERESGHYVEMHARYIGTTVFVRQVGRYLTLAI 334
D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +RQ L+ +I
Sbjct: 239 EVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIRQTAGQLSFSI 298
Query: 335 RMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLVQAWPGYTLET 394
++ ED+AM++ QDLQLCV GCP S+R+ + + T++T
Sbjct: 299 KVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI----------------TIDT 342
Query: 395 ANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKERWHIFPSSGN 454
A C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E+ H+FPS
Sbjct: 343 ARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLEKLHLFPSDA- 401
Query: 455 GTPRGGSDLSVSL--GLTCLILIV 476
G P + L L GL L L +
Sbjct: 402 GVPLSSATLLAPLLSGLFVLWLCI 425
>gi|44662823 hemojuvelin isoform b [Homo sapiens]
Length = 313
Score = 267 bits (683), Expect = 1e-71
Identities = 147/334 (44%), Positives = 195/334 (58%), Gaps = 36/334 (10%)
Query: 157 MSQRNCSKDGPTSSTNPE-----------VTHDPCNYHSHAGAREHRRGDQNPPSYLFCG 205
M Q NCS+ GPT+ P DPC+Y +R H R PP +L C
Sbjct: 1 MIQHNCSRQGPTAPPPPRGPALPGAGSGLPAPDPCDYEGRF-SRLHGR----PPGFLHCA 55
Query: 206 LFGDPHLRTFKDNFQTCKVEGAWPLIDNNYLSVQVTNVPVVPGSSATATNKITIIFKAHH 265
FGDPH+R+F +F TC+V+GAWPL+DN++L VQ T+ P+ G++ATAT K+TIIFK
Sbjct: 56 SFGDPHVRSFHHHFHTCRVQGAWPLLDNDFLFVQATSSPMALGANATATRKLTIIFKNMQ 115
Query: 266 ECTDQKVYQAVTDDLPAAFVDGTTSGGD-SDAKSLRIVERESGHYVEMHARYIGTTVFVR 324
EC DQKVYQA D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +R
Sbjct: 116 ECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIR 175
Query: 325 QVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLV 384
Q L+ +I++ ED+AM++ QDLQLCV GCP S+R+ + +
Sbjct: 176 QTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI---------- 225
Query: 385 QAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKE 444
T++TA C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E
Sbjct: 226 ------TIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLE 279
Query: 445 RWHIFPSSGNGTPRGGSDLSVSL--GLTCLILIV 476
+ H+FPS G P + L L GL L L +
Sbjct: 280 KLHLFPSDA-GVPLSSATLLAPLLSGLFVLWLCI 312
>gi|42544157 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 166 bits (420), Expect = 4e-41
Identities = 93/214 (43%), Positives = 123/214 (57%), Gaps = 20/214 (9%)
Query: 266 ECTDQKVYQAVTDDLPAAFVDGTTSGGDSDA-KSLRIVERESGHYVEMHARYIGTTVFVR 324
EC DQKVYQA D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +R
Sbjct: 3 ECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIR 62
Query: 325 QVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLV 384
Q L+ +I++ ED+AM++ QDLQLCV GCP S+R+ + +
Sbjct: 63 QTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI---------- 112
Query: 385 QAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKE 444
T++TA C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E
Sbjct: 113 ------TIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLE 166
Query: 445 RWHIFPSSGNGTPRGGSDLSVSL--GLTCLILIV 476
+ H+FPS G P + L L GL L L +
Sbjct: 167 KLHLFPSDA-GVPLSSATLLAPLLSGLFVLWLCI 199
>gi|47458050 hemojuvelin isoform c [Homo sapiens]
Length = 200
Score = 166 bits (420), Expect = 4e-41
Identities = 93/214 (43%), Positives = 123/214 (57%), Gaps = 20/214 (9%)
Query: 266 ECTDQKVYQAVTDDLPAAFVDGTTSGGDSDA-KSLRIVERESGHYVEMHARYIGTTVFVR 324
EC DQKVYQA D+LP AF DG+ +GGD SL I G++VE+ A YIGTT+ +R
Sbjct: 3 ECIDQKVYQAEVDNLPVAFEDGSINGGDRPGGSSLSIQTANPGNHVEIQAAYIGTTIIIR 62
Query: 325 QVGRYLTLAIRMPEDLAMSYEESQDLQLCVNGCPLSERIDDGQGQVSAILGHSLPRTSLV 384
Q L+ +I++ ED+AM++ QDLQLCV GCP S+R+ + +
Sbjct: 63 QTAGQLSFSIKVAEDVAMAFSAEQDLQLCVGGCPPSQRLSRSERNRRGAI---------- 112
Query: 385 QAWPGYTLETANTQCHEKMPVKDIYFQSCVFDLLTTGDANFTAAAHSALEDVEALHPRKE 444
T++TA C E +PV+D YF SCVFD+L +GD NFT AA +ALED A P E
Sbjct: 113 ------TIDTARRLCKEGLPVEDAYFHSCVFDVLISGDPNFTVAAQAALEDARAFLPDLE 166
Query: 445 RWHIFPSSGNGTPRGGSDLSVSL--GLTCLILIV 476
+ H+FPS G P + L L GL L L +
Sbjct: 167 KLHLFPSDA-GVPLSSATLLAPLLSGLFVLWLCI 199
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 2 IRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQR 61
+R++R R++P G RP+ +P+P PSP P+ PA G A SS A + R
Sbjct: 123 LRRRRARNSP-------GIRPSPSPSPSPSPSPS-PARGGRWTTCASSSPALPGTDGVLR 174
Query: 62 RSPGLCPPPLELLLLLLFS 80
R +CPP +L L+ S
Sbjct: 175 RMSPVCPPSPVVLACLVSS 193
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 2 IRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQR 61
+R++R R++P G RP+ +P+P PSP P+ PA G A SS A + R
Sbjct: 123 LRRRRARNSP-------GIRPSPSPSPSPSPSPS-PARGGRWTTCASSSPALPGTDGVLR 174
Query: 62 RSPGLCPPPLELLLLLLFS 80
R +CPP +L L+ S
Sbjct: 175 RMSPVCPPSPVVLACLVSS 193
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 44.3 bits (103), Expect = 2e-04
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 2 IRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQR 61
+R++R R++P G RP+ +P+P PSP P+ PA G A SS A + R
Sbjct: 123 LRRRRARNSP-------GIRPSPSPSPSPSPSPS-PARGGRWTTCASSSPALPGTDGVLR 174
Query: 62 RSPGLCPPPLELLLLLLFS 80
R +CPP +L L+ S
Sbjct: 175 RMSPVCPPSPVVLACLVSS 193
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 40.4 bits (93), Expect = 0.004
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 2 IRKKRKRSAPPGPCRSHGPRPATA--------PAPPPSPEPTRPAWTGMGLRAA------ 47
++ R+ + PP P R+ PA A PAPPP P P A RAA
Sbjct: 99 VQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATA 158
Query: 48 -PSSAAAAAAEVEQRRSPGLCPPP 70
PS A QR +P PPP
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPP 182
Score = 33.9 bits (76), Expect = 0.33
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 11/66 (16%)
Query: 9 SAPPGPCRSH-GP---RPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSP 64
+APP P + GP R A APPP+P G R AP A AA R P
Sbjct: 157 TAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAA-------REP 209
Query: 65 GLCPPP 70
L PPP
Sbjct: 210 PLPPPP 215
Score = 33.5 bits (75), Expect = 0.44
Identities = 25/75 (33%), Positives = 26/75 (34%), Gaps = 15/75 (20%)
Query: 11 PPGPCRSHGPRPATAPAP-------------PPSPEPTRPAWTGMGLR--AAPSSAAAAA 55
PP P P P A AP PPSP P +P AAP A AA
Sbjct: 128 PPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAP 187
Query: 56 AEVEQRRSPGLCPPP 70
V P PPP
Sbjct: 188 PAVAPPAGPRRAPPP 202
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 40.0 bits (92), Expect = 0.005
Identities = 25/63 (39%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 10 APPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCPP 69
APP P GP PA PA P+ +P T +G APS+A A R+PG PP
Sbjct: 343 APP-PSAPSGPAPAPPPAFYPTLQPEAAPSTQLGEVPAPSAAPTTAPSGTPARTPGAEPP 401
Query: 70 PLE 72
E
Sbjct: 402 TYE 404
>gi|46249414 latent transforming growth factor beta binding protein
1 isoform LTBP-1L [Homo sapiens]
Length = 1722
Score = 39.7 bits (91), Expect = 0.006
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 4 KKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRR 62
++ +R++ PG G RP PPP PEP RPA G L P AAA +Q R
Sbjct: 82 ERTRRTSKPGGAALQGLRPP----PPPPPEPARPAVPGGQLHPNPGGHPAAAPFTKQGR 136
>gi|169202389 PREDICTED: similar to mCG50504 [Homo sapiens]
Length = 189
Score = 39.7 bits (91), Expect = 0.006
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 11 PPGPCRSHGPRPATAPAPPPSPEPTR----PAWTGMGLRAAPSSAAAAAAEVEQRRSPGL 66
PP + H T P+ PP EPTR PA +G AA ++ A AA Q
Sbjct: 103 PPSTAKLHREEDRTDPSRPPPKEPTRGSKTPAPARLGRAAATAATATTAAAAPQCGPASA 162
Query: 67 CPPP 70
PPP
Sbjct: 163 APPP 166
>gi|169210256 PREDICTED: hypothetical protein [Homo sapiens]
Length = 447
Score = 39.3 bits (90), Expect = 0.008
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 8 RSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLC 67
R+ P GPC + GP P P P PTR T GL S A AE + R+P
Sbjct: 253 RAQPGGPCWAQGP---PGRLPDPIPLPTRAPRTSAGLAGVGSGAPGEPAEPGRARAPRSA 309
Query: 68 PPPLE 72
P E
Sbjct: 310 PSSRE 314
>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 38.9 bits (89), Expect = 0.010
Identities = 34/107 (31%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 2 IRKKRKRSAPPGPC-RSHGPRP-ATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVE 59
+R + PP C R+ P P PAPPP+P T PA R P AA
Sbjct: 111 LRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRGRPGPAAGRRV--- 167
Query: 60 QRRSPGLCP-----------PPLELLLLLLFSLGLLHAGDCQQPAQC 95
RRSP P PL L LLLL + G ++ C
Sbjct: 168 -RRSPSFPPFLLAQTRLGRTGPLALCLLLLLHGAMRLGGGSREKLAC 213
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 38.9 bits (89), Expect = 0.010
Identities = 21/59 (35%), Positives = 25/59 (42%)
Query: 12 PGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCPPP 70
P P P PAT PAP P+PEP + A S A E+ +P L P P
Sbjct: 95 PEPATEPAPEPATEPAPEPAPEPATESAPEPTPEPALESVPEPAPELTPEVAPELAPEP 153
Score = 33.1 bits (74), Expect = 0.57
Identities = 18/55 (32%), Positives = 21/55 (38%)
Query: 14 PCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCP 68
P P PAT PAP P+ EP +AP A E +P L P
Sbjct: 89 PASEPAPEPATEPAPEPATEPAPEPAPEPATESAPEPTPEPALESVPEPAPELTP 143
Score = 30.8 bits (68), Expect = 2.8
Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 12/65 (18%)
Query: 12 PGPC------------RSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVE 59
PGPC P PAT PA P+PEP AP A A E
Sbjct: 63 PGPCPEATSESATELYTEPTPEPATEPASEPAPEPATEPAPEPATEPAPEPAPEPATESA 122
Query: 60 QRRSP 64
+P
Sbjct: 123 PEPTP 127
Score = 29.3 bits (64), Expect = 8.2
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 11 PPGPCRSHGPRPATAPAPP----PSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSP 64
PP P P PA PAPP SPEP + P + + +A E+ +P
Sbjct: 26 PPPPWPPPPPPPAPPPAPPLLSEASPEPIPEPCPELAPGPCPEATSESATELYTEPTP 83
>gi|237757310 synaptojanin 1 isoform a [Homo sapiens]
Length = 1612
Score = 38.5 bits (88), Expect = 0.014
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 7 KRSAPPGPCRSHG-PRPATAPAPPP---SPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRR 62
KR PP P P P P PP SP PTR + G+G AP S A E+E +
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIG---APPSPGVARREMEAPK 1201
Query: 63 SPG 65
SPG
Sbjct: 1202 SPG 1204
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 38.5 bits (88), Expect = 0.014
Identities = 26/63 (41%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 7 KRSAPPGPCRSHG-PRPATAPAPPP---SPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRR 62
KR PP P P P P PP SP PTR + G+G AP S A E+E +
Sbjct: 1145 KRPPPPRPVAPPTRPAPPQRPPPPSGARSPAPTRKEFGGIG---APPSPGVARREMEAPK 1201
Query: 63 SPG 65
SPG
Sbjct: 1202 SPG 1204
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 37.0 bits (84), Expect = 0.039
Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 11 PPGPCRSHGPRPATAPAPPPSPEPTRPAWT-GMGLRAAPSSA 51
PP P S GP PA +P PP S EP WT G ++AA SA
Sbjct: 83 PPDPPDSAGPGPARSP-PPSSKEPPEGTWTEGAPVKAAEDSA 123
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 37.0 bits (84), Expect = 0.039
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAA 54
+A PC P P PAPPPSP P PA GL + P+ AA+
Sbjct: 2647 TAVAAPCPPVTPAPPAPPAPPPSPPPP-PAVQHTGLLSTPTLPAAS 2691
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 37.0 bits (84), Expect = 0.039
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAA 54
+A PC P P PAPPPSP P PA GL + P+ AA+
Sbjct: 2664 TAVAAPCPPVTPAPPAPPAPPPSPPPP-PAVQHTGLLSTPTLPAAS 2708
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 36.6 bits (83), Expect = 0.052
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 2 IRKKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAA---EV 58
++ + +R APP P S G P P PP + P P G G P S A AA
Sbjct: 268 VKNELRRQAPPPPPPSRG-GPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTAAPPPPP 326
Query: 59 EQRRSPGLCPPP 70
R S + PPP
Sbjct: 327 PSRPSVAVPPPP 338
Score = 31.2 bits (69), Expect = 2.2
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 19/83 (22%)
Query: 11 PPGPCRSHGPRPATAPAPPPS-PEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCPP 69
PP P R + P P P+ PS P P P+ G+G A P PG PP
Sbjct: 336 PPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPPP-------PPGPPPP 388
Query: 70 PLELLLLLLFSLGLLHAGDCQQP 92
P GL GD Q P
Sbjct: 389 P-----------GLPSDGDHQVP 400
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 11 PPGPCRSHGPRPATAPAPPPSP----EPTRPAWTGMGLRAAPSSAAAAAAEVEQRR 62
PP P G P P PPP P P P G P++A AA ++Q R
Sbjct: 359 PPPPPSVLGVGPVAPPPPPPPPPPPGPPPPPGLPSDGDHQVPTTAGNKAALLDQIR 414
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 36.6 bits (83), Expect = 0.052
Identities = 23/57 (40%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 3 RKKRKRSAPPGPCRSHG------PRPATAPAPPPSPEPTRP---AWTGMGLRAAPSS 50
RK R R P RS P PA P PPP P P P AW G R+ P S
Sbjct: 102 RKPRPRPQPRARSRSQPGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSRPGS 158
>gi|5453936 POU class 3 homeobox 3 [Homo sapiens]
Length = 500
Score = 36.6 bits (83), Expect = 0.052
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 13 GPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCPPPLE 72
G H P P PPP P P G AA ++AAAAAA + G PPP
Sbjct: 161 GTALHHRGPPHLGPPPPP-PHQGHPGGWGAAAAAAAAAAAAAAAAHLPSMAGGQQPPPQS 219
Query: 73 LL 74
LL
Sbjct: 220 LL 221
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 36.2 bits (82), Expect = 0.067
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 13 GPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRR 62
GP R P P+ PAP P P P RPA AA ++A A +RR
Sbjct: 268 GPARPPSPSPSPVPAPAPPPGPPRPA-------AAAATAPLANGRAGKRR 310
>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
sapiens]
Length = 284
Score = 36.2 bits (82), Expect = 0.067
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 4 KKRKRSAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRS 63
+KR +P P + G A APPP P P RP G R P+ + +RRS
Sbjct: 121 RKRSSVSPAAPGKIGGVSLAVGAAPPP-PRPNRPRCAARG-RPTPTRGSTRQRGGAERRS 178
Query: 64 PG 65
PG
Sbjct: 179 PG 180
>gi|119943102 CREB binding protein isoform b [Homo sapiens]
Length = 2404
Score = 35.8 bits (81), Expect = 0.088
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCP 68
+A P P GP+ + P PP + P P P+S AA ++ PG+ P
Sbjct: 789 AALPNPLNMLGPQASQLPCPPVTQSPLHPT-------PPPASTAAGMPSLQHTTPPGMTP 841
Query: 69 P 69
P
Sbjct: 842 P 842
Score = 29.6 bits (65), Expect = 6.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGL----RAAPSSAAAAAAEVEQRRSP 64
SAPPG P T P PP P+P+ + + G R P + + Q +P
Sbjct: 1849 SAPPGTPTQQPSTPQT-PQPPAQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAP 1907
Query: 65 GLCPPPLE 72
PPP +
Sbjct: 1908 ---PPPAQ 1912
>gi|119943104 CREB binding protein isoform a [Homo sapiens]
Length = 2442
Score = 35.8 bits (81), Expect = 0.088
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGLRAAPSSAAAAAAEVEQRRSPGLCP 68
+A P P GP+ + P PP + P P P+S AA ++ PG+ P
Sbjct: 827 AALPNPLNMLGPQASQLPCPPVTQSPLHPT-------PPPASTAAGMPSLQHTTPPGMTP 879
Query: 69 P 69
P
Sbjct: 880 P 880
Score = 29.6 bits (65), Expect = 6.3
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 9 SAPPGPCRSHGPRPATAPAPPPSPEPTRPAWTGMGL----RAAPSSAAAAAAEVEQRRSP 64
SAPPG P T P PP P+P+ + + G R P + + Q +P
Sbjct: 1887 SAPPGTPTQQPSTPQT-PQPPAQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAP 1945
Query: 65 GLCPPPLE 72
PPP +
Sbjct: 1946 ---PPPAQ 1950
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 35.8 bits (81), Expect = 0.088
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 18/83 (21%)
Query: 1 MIRKKRKRSAPPGPCRSHGPRPATAP-APPP------------SPEPTRPAWTGMGLRAA 47
+I R++SA P + PRP + P APPP SP+P RP G A
Sbjct: 761 IINAARRKSASPRSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPARP-----GSAAV 815
Query: 48 PSSAAAAAAEVEQRRSPGLCPPP 70
P +A A P C P
Sbjct: 816 PGAAFAPIPRSPLPAGPSSCTSP 838
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 35.8 bits (81), Expect = 0.088
Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 15 CRSHGPRPATAPAPPPSPEPTRPAWTGMGLRA-APSSAAAAAAEVEQR-RSPGLCPPP 70
CR GP P P PPP P P G+ RA AP A A E QR + PPP
Sbjct: 68 CRDPGPPPPPPPPPPPPPPP------GLSPRAPAPPPAGALLPEPGQRCEAVSSSPPP 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,877,698
Number of Sequences: 37866
Number of extensions: 1172999
Number of successful extensions: 14280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 421
Number of HSP's that attempted gapping in prelim test: 10905
Number of HSP's gapped (non-prelim): 2913
length of query: 478
length of database: 18,247,518
effective HSP length: 106
effective length of query: 372
effective length of database: 14,233,722
effective search space: 5294944584
effective search space used: 5294944584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.