Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 224548929
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224548929 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform c [Homo sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224548929 G-protein signaling modulator 1 (AGS3-like, C. eleg... 343 3e-95
gi|224548927 G-protein signaling modulator 1 (AGS3-like, C. eleg... 343 3e-95
gi|164519122 LGN protein [Homo sapiens] 145 2e-35
gi|11545817 G-protein signaling modulator 3 (AGS3-like, C. elega... 49 2e-06
gi|68299799 Purkinje cell protein 2 [Homo sapiens] 49 2e-06
gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo ... 32 0.25
gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo... 32 0.25
gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo... 32 0.25
gi|224809578 RAP1 GTPase activating protein isoform a [Homo sapi... 32 0.33
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 32 0.33
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 31 0.56
gi|169172081 PREDICTED: hypothetical protein [Homo sapiens] 30 0.73
gi|169170823 PREDICTED: hypothetical protein [Homo sapiens] 30 0.73
gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform ... 30 0.73
gi|194097341 period 1 [Homo sapiens] 29 2.1
gi|4507877 vinculin isoform VCL [Homo sapiens] 29 2.1
gi|7669550 vinculin isoform meta-VCL [Homo sapiens] 29 2.1
gi|21071060 SWI/SNF-related matrix-associated actin-dependent re... 29 2.1
gi|187761314 SWI/SNF-related matrix-associated actin-dependent r... 29 2.1
gi|54792058 lung type-I cell membrane-associated glycoprotein is... 28 3.6
gi|54792056 lung type-I cell membrane-associated glycoprotein is... 28 3.6
gi|51477718 TATA box binding protein-associated factor, RNA poly... 28 3.6
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 28 3.6
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 27 6.1
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 27 6.1
gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo... 27 6.1
gi|83367077 mucin 16 [Homo sapiens] 27 8.0
gi|114796644 regulator of chromosome condensation 1 isoform a [H... 27 8.0
gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens] 27 8.0
gi|224809582 RAP1 GTPase activating protein isoform c [Homo sapi... 27 8.0
>gi|224548929 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform c [Homo sapiens]
Length = 166
Score = 343 bits (881), Expect = 3e-95
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS
Sbjct: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
Query: 61 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP 120
VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP
Sbjct: 61 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP 120
Query: 121 DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS 166
DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS
Sbjct: 121 DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS 166
>gi|224548927 G-protein signaling modulator 1 (AGS3-like, C.
elegans) isoform a [Homo sapiens]
Length = 675
Score = 343 bits (881), Expect = 3e-95
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS
Sbjct: 510 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 569
Query: 61 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP 120
VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP
Sbjct: 570 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMP 629
Query: 121 DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS 166
DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS
Sbjct: 630 DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQCQPGAS 675
Score = 53.5 bits (127), Expect = 8e-08
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 33/108 (30%)
Query: 83 PQEPGDD---FFNMLIKYQSSRIDDQRCPPPD------VLPRGPTMPD------------ 121
P+ P D FF++L K+QSSR+DDQRCP D PT+ D
Sbjct: 488 PRAPSSDEECFFDLLTKFQSSRMDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQ 547
Query: 122 -EDFFSLIQRVQAKRMDEQRVDLA-----------GGPEQGAGGPPEP 157
E+FF LI Q++R+D+QR + G +G G P EP
Sbjct: 548 TEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLRGHGEPQEP 595
Score = 37.4 bits (85), Expect = 0.006
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 109 PPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEP 157
P +PR P+ +E FF L+ + Q+ RMD+QR L G A P
Sbjct: 483 PRTSIPRAPSSDEECFFDLLTKFQSSRMDDQRCPLDDGQAGAAEATAAP 531
>gi|164519122 LGN protein [Homo sapiens]
Length = 684
Score = 145 bits (365), Expect = 2e-35
Identities = 78/146 (53%), Positives = 98/146 (67%), Gaps = 6/146 (4%)
Query: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMT--ASPQTEEFFDLIASSQSRRLDDQR 58
MDDQRC L + A T + T + + S SP T+EF DL+ASSQSRRLDDQR
Sbjct: 504 MDDQRCCLQEKNCHTASTTTSSTPPKMMLKTSSVPVVSPNTDEFLDLLASSQSRRLDDQR 563
Query: 59 ASVGSLPGLRITHSNAG---HLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPR 115
AS +LPGLR+T ++ HL + + +E +DFF++L+K Q SR+DDQRC PP +
Sbjct: 564 ASFSNLPGLRLTQNSQSVLSHLMTN-DNKEADEDFFDILVKCQGSRLDDQRCAPPPATTK 622
Query: 116 GPTMPDEDFFSLIQRVQAKRMDEQRV 141
GPT+PDEDFFSLI R Q KRMDEQRV
Sbjct: 623 GPTVPDEDFFSLILRSQGKRMDEQRV 648
Score = 41.6 bits (96), Expect = 3e-04
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 22/83 (26%)
Query: 87 GDD-FFNMLIKYQSSRIDDQRC----------------PPPDVLPRGPTMP-----DEDF 124
GD+ FF++L ++QS+R+DDQRC PP ++ + ++P ++F
Sbjct: 488 GDEGFFDLLSRFQSNRMDDQRCCLQEKNCHTASTTTSSTPPKMMLKTSSVPVVSPNTDEF 547
Query: 125 FSLIQRVQAKRMDEQRVDLAGGP 147
L+ Q++R+D+QR + P
Sbjct: 548 LDLLASSQSRRLDDQRASFSNLP 570
Score = 33.1 bits (74), Expect = 0.11
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 104 DQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQR 140
D R P T+ DE FF L+ R Q+ RMD+QR
Sbjct: 472 DHRIPNSQRKISADTIGDEGFFDLLSRFQSNRMDDQR 508
>gi|11545817 G-protein signaling modulator 3 (AGS3-like, C. elegans)
[Homo sapiens]
Length = 160
Score = 49.3 bits (116), Expect = 2e-06
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 15/107 (14%)
Query: 36 SPQTEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLR-GHGEPQEPGDDFFNML 94
S QTE DL+A +QSRRL++QRA+ T N L P E + ++ +
Sbjct: 59 SLQTELLLDLVAEAQSRRLEEQRATF-------YTPQNPSSLAPAPLRPLEDREQLYSTI 111
Query: 95 IKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQ-AKRMDEQR 140
+ +Q R++ QR PP LP G ++ L+ RVQ RM+EQR
Sbjct: 112 LSHQCQRMEAQRSEPP--LPPG----GQELLELLLRVQGGGRMEEQR 152
>gi|68299799 Purkinje cell protein 2 [Homo sapiens]
Length = 136
Score = 49.3 bits (116), Expect = 2e-06
Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 21/94 (22%)
Query: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
M+ QRC L G ++ + PT P+ + D++AS+Q RR+DDQR +
Sbjct: 38 MEGQRCSLQAGPGQTTKSQSDPT-------------PEMDSLMDMLASTQGRRMDDQRVT 84
Query: 61 VGSLPGLRITHSNAGHLRGHG--------EPQEP 86
V SLPG + S G + G PQ+P
Sbjct: 85 VSSLPGFQPVGSKDGAQKRAGTLSPQPLLTPQDP 118
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 24/106 (22%)
Query: 1 MDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRAS 60
M DQ ++G AEA SP E FF+L++ Q R++ QR S
Sbjct: 1 MMDQEEKTEEGSGPCAEA----------------GSPDQEGFFNLLSHVQGDRMEGQRCS 44
Query: 61 VGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQR 106
+ + PG + +P D +ML Q R+DDQR
Sbjct: 45 LQAGPGQT--------TKSQSDPTPEMDSLMDMLASTQGRRMDDQR 82
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 70 THSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDDQRC-----PPPDVLPRGPTMPDED- 123
T +G G P + G FFN+L Q R++ QRC P + P+ D
Sbjct: 8 TEEGSGPCAEAGSPDQEG--FFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDPTPEMDS 65
Query: 124 FFSLIQRVQAKRMDEQRVDLAGGP 147
++ Q +RMD+QRV ++ P
Sbjct: 66 LMDMLASTQGRRMDDQRVTVSSLP 89
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 120 PDED-FFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEP 157
PD++ FF+L+ VQ RM+ QR L GP Q +P
Sbjct: 21 PDQEGFFNLLSHVQGDRMEGQRCSLQAGPGQTTKSQSDP 59
>gi|4506509 regulator of G-protein signalling 12 isoform 2 [Homo
sapiens]
Length = 1376
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 38 QTEEFFDLIASSQSRRLDDQR 58
+ EEFF+LI+ +QS R DDQR
Sbjct: 1186 EAEEFFELISKAQSNRADDQR 1206
Score = 26.9 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 85 EPGDDFFNMLIKYQSSRIDDQR 106
+ ++FF ++ K QS+R DDQR
Sbjct: 1185 DEAEEFFELISKAQSNRADDQR 1206
>gi|38327601 regulator of G-protein signalling 12 isoform 1 [Homo
sapiens]
Length = 1447
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 38 QTEEFFDLIASSQSRRLDDQR 58
+ EEFF+LI+ +QS R DDQR
Sbjct: 1186 EAEEFFELISKAQSNRADDQR 1206
Score = 26.9 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 85 EPGDDFFNMLIKYQSSRIDDQR 106
+ ++FF ++ K QS+R DDQR
Sbjct: 1185 DEAEEFFELISKAQSNRADDQR 1206
>gi|38327599 regulator of G-protein signalling 12 isoform 3 [Homo
sapiens]
Length = 799
Score = 32.0 bits (71), Expect = 0.25
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 38 QTEEFFDLIASSQSRRLDDQR 58
+ EEFF+LI+ +QS R DDQR
Sbjct: 538 EAEEFFELISKAQSNRADDQR 558
Score = 26.9 bits (58), Expect = 8.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 85 EPGDDFFNMLIKYQSSRIDDQR 106
+ ++FF ++ K QS+R DDQR
Sbjct: 537 DEAEEFFELISKAQSNRADDQR 558
>gi|224809578 RAP1 GTPase activating protein isoform a [Homo
sapiens]
Length = 727
Score = 31.6 bits (70), Expect = 0.33
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 89 DFFNMLIKYQSSRIDDQRC--PPP 110
D F M+ K Q SR+D+QRC PPP
Sbjct: 61 DLFEMIEKMQGSRMDEQRCSFPPP 84
Score = 27.3 bits (59), Expect = 6.1
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 31 PSMTAS--PQTEEFFDLIASSQSRRLDDQRAS 60
PS T S P+ + F++I Q R+D+QR S
Sbjct: 49 PSYTPSLYPKNTDLFEMIEKMQGSRMDEQRCS 80
Score = 27.3 bits (59), Expect = 6.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 123 DFFSLIQRVQAKRMDEQR 140
D F +I+++Q RMDEQR
Sbjct: 61 DLFEMIEKMQGSRMDEQR 78
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 31.6 bits (70), Expect = 0.33
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 103 DDQRCPPPDVLPRGPTMP--DEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPE--PQ 158
D ++ P P L + P ++ +L Q + + + D GGP +G+ GPP PQ
Sbjct: 40 DPKKAPDPPTLKKDAKAPASEKGDGTLAQPSTSSQGPKGEGDRGGGPAEGSAGPPAALPQ 99
Query: 159 QQCQPGAS 166
Q P S
Sbjct: 100 QTATPETS 107
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 30.8 bits (68), Expect = 0.56
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 108 PPPDVLP-----RGPTMPDEDFFSLIQRVQAKRMDEQRVDLAGGPEQG-AGGPPEP 157
PPP LP GP+ P+E Q+ E+RV AGGP AGGPP P
Sbjct: 119 PPPPALPTWSVPNGPS-PEEVEQQKRQQPGPSEHIERRVSNAGGPPAPPAGGPPPP 173
>gi|169172081 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 0.73
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 4 QRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGS 63
+RCP D G A + + +PT E+ SP TEE + S S+R R + S
Sbjct: 25 KRCPPDRGAAPVSLSALSPTTEEPSQSQLSALSPTTEE----LPQSHSQRCPPDRGATPS 80
>gi|169170823 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.4 bits (67), Expect = 0.73
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 4 QRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGS 63
+RCP D G A + + +PT E+ SP TEE + S S+R R + S
Sbjct: 25 KRCPPDRGAAPVSLSALSPTTEEPSQSQLSALSPTTEE----LPQSHSQRCPPDRGATPS 80
>gi|156086724 GTPase activating Rap/RanGAP domain-like 4 isoform 1
[Homo sapiens]
Length = 730
Score = 30.4 bits (67), Expect = 0.73
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 94 LIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQR 140
L + + D+ PP P PTM +FF +++++Q +++EQ+
Sbjct: 31 LANSSDATLPDRPLSPPLTAP--PTMKSSEFFEMLEKMQGIKLEEQK 75
>gi|194097341 period 1 [Homo sapiens]
Length = 1290
Score = 28.9 bits (63), Expect = 2.1
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 110 PDVLPRGPTMPDEDFFS----------LIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQ 159
P + P P PD F+ L+Q + R + V AGGP AG PP +
Sbjct: 959 PALAPSPPHRPDSPLFNSRCSSPLQLNLLQLEELPRAEGAAV--AGGPGSSAGPPPPSAE 1016
Query: 160 QCQPGA 165
+P A
Sbjct: 1017 AAEPEA 1022
>gi|4507877 vinculin isoform VCL [Homo sapiens]
Length = 1066
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 44 DLIASSQSRRLDDQRASVGSL--PGLRITHSNAGH--------LRGHGEPQEPGDDFFNM 93
D ++ + S + D +A G++ PGL+ + ++G+ +R +PQEP DF
Sbjct: 788 DELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP--DFPPP 845
Query: 94 LIKYQSSRIDDQRCPPPDVLPRGPTMP 120
+ R+ D+ PP LP G P
Sbjct: 846 PPDLEQLRLTDELAPPKPPLPEGEVPP 872
>gi|7669550 vinculin isoform meta-VCL [Homo sapiens]
Length = 1134
Score = 28.9 bits (63), Expect = 2.1
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 44 DLIASSQSRRLDDQRASVGSL--PGLRITHSNAGH--------LRGHGEPQEPGDDFFNM 93
D ++ + S + D +A G++ PGL+ + ++G+ +R +PQEP DF
Sbjct: 788 DELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQEP--DFPPP 845
Query: 94 LIKYQSSRIDDQRCPPPDVLPRGPTMP 120
+ R+ D+ PP LP G P
Sbjct: 846 PPDLEQLRLTDELAPPKPPLPEGEVPP 872
>gi|21071060 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 9 DDGQAGAAEATAAPTLEDRIAQPSMTASPQTE---EFFD 44
D G A +++ + D + + S+TASPQ + EFFD
Sbjct: 907 DPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFD 945
>gi|187761314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a-like 1 [Homo sapiens]
Length = 954
Score = 28.9 bits (63), Expect = 2.1
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 9 DDGQAGAAEATAAPTLEDRIAQPSMTASPQTE---EFFD 44
D G A +++ + D + + S+TASPQ + EFFD
Sbjct: 907 DPGSASGTSGSSSQNMGDTLDESSLTASPQKKRRFEFFD 945
>gi|54792058 lung type-I cell membrane-associated glycoprotein
isoform b [Homo sapiens]
Length = 236
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 7 PLDDGQAGAAEA-TAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGSLP 65
P DD + E A P ED + P + L+A+S V S+
Sbjct: 104 PEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATS-----------VNSVT 152
Query: 66 GLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRID 103
G+RI H + Q P N+ + + ++D
Sbjct: 153 GIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVD 190
>gi|54792056 lung type-I cell membrane-associated glycoprotein
isoform a [Homo sapiens]
Length = 238
Score = 28.1 bits (61), Expect = 3.6
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 7 PLDDGQAGAAEA-TAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGSLP 65
P DD + E A P ED + P + L+A+S V S+
Sbjct: 104 PEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATS-----------VNSVT 152
Query: 66 GLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRID 103
G+RI H + Q P N+ + + ++D
Sbjct: 153 GIRIEDLPTSESTVHAQEQSPSATASNVATSHSTEKVD 190
>gi|51477718 TATA box binding protein-associated factor, RNA
polymerase II, Q [Homo sapiens]
Length = 462
Score = 28.1 bits (61), Expect = 3.6
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 17 EATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGH 76
E +P +E+ + + + + +++IA ++ ++ Q GS+PG I+ + H
Sbjct: 254 EYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQ----GSIPGFLISSGMSSH 309
Query: 77 LRGHGEPQEPGDDFFNMLIKYQSSRIDDQ 105
+GH + D M +S+ DD+
Sbjct: 310 KQGHTSSEY--DMLREMFSDSRSNNDDDE 336
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 28.1 bits (61), Expect = 3.6
Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 2 DDQRCPLDDGQAGAAEATAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASV 61
D++R PL G+A + + + +A S SP E S++ + +AS
Sbjct: 174 DEKRTPLSSGEASSTSRSQGT--QGDVA--SFRCSPGPLEGNVYHKFSENSMSEKAQASP 229
Query: 62 GSL----PGLRITHSNAGHLRGHGEPQ-------EPGDDFFNMLIKYQSSRIDDQRCPP- 109
S P + THS AG R G+P EP ++L + ++ + ++ PP
Sbjct: 230 ASSCLEGPAMPSTHSQAGCARHLGKPDPDATAPPEPAVG-CSLLQQKLAAEVLNEEPPPS 288
Query: 110 ----PDVLPRGPTMPDEDFFSLIQRVQA 133
P L G MPDE F + R A
Sbjct: 289 SLGLPIPLMSGKRMPDEKPFCIPPRSAA 316
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 27.3 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 64 LPGLRITHSNAGHLRGHGEPQEPGDD 89
+PG T + +RGHGEP+ P D
Sbjct: 538 VPGRADTSQPSARMRGHGEPRRPPCD 563
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 27.3 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 64 LPGLRITHSNAGHLRGHGEPQEPGDD 89
+PG T + +RGHGEP+ P D
Sbjct: 572 VPGRADTSQPSARMRGHGEPRRPPCD 597
>gi|7662260 kelch repeat and BTB (POZ) domain containing 11 [Homo
sapiens]
Length = 623
Score = 27.3 bits (59), Expect = 6.1
Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 80 HGEPQEPGDDFFNMLIKYQSSRIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQ 139
HGE G F L+KY R + Q CP R M D F
Sbjct: 456 HGEIYVSGGSLFYRLLKYDPRRDEWQECPCSSSRERSADMVALDGFI------------Y 503
Query: 140 RVDLAG--GPEQGAG 152
R DL+G G Q AG
Sbjct: 504 RFDLSGSRGEAQAAG 518
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 26.9 bits (58), Expect = 8.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 13 AGAAEATAAPTLEDRIAQPSMTA----SPQTEEFFDLIASSQSRRLDDQRASVGSLPG 66
+GAA +T PTL P TA P+TE AS+ ++ + AS+ PG
Sbjct: 11750 SGAATSTTVPTLTHSPGMPETTALLSTHPRTETSKTFPASTVFPQVSETTASLTIRPG 11807
>gi|114796644 regulator of chromosome condensation 1 isoform a [Homo
sapiens]
Length = 452
Score = 26.9 bits (58), Expect = 8.0
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 101 RIDDQRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDLAGGPEQGAGGPPEPQQQ 160
RI +R PP D +P+ + D R A R RV A QGA GP P Q+
Sbjct: 5 RIAKRRSPPADAIPKSKKVKD-------TRAAASR----RVPGARSC-QGACGPSPPDQK 52
Query: 161 CQP 163
+P
Sbjct: 53 TRP 55
>gi|239750468 PREDICTED: similar to Os05g0242100 [Homo sapiens]
Length = 758
Score = 26.9 bits (58), Expect = 8.0
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 19 TAAPTLEDRIAQPSMTASPQTEEFFDLIASSQSRRLDDQRASVGSLPGLRITHSNAGHLR 78
TA T A PS A+ + L S RL R S GS PG R H R
Sbjct: 10 TAPSTAHSSPATPSAPAAQRA-----LAEQPMSARLGPTRGSQGSAPGRRRGRRQRRHRR 64
Query: 79 G 79
G
Sbjct: 65 G 65
>gi|224809582 RAP1 GTPase activating protein isoform c [Homo
sapiens]
Length = 663
Score = 26.9 bits (58), Expect = 8.0
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 93 MLIKYQSSRIDDQRC--PPP 110
M+ K Q SR+D+QRC PPP
Sbjct: 1 MIEKMQGSRMDEQRCSFPPP 20
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,535,529
Number of Sequences: 37866
Number of extensions: 446508
Number of successful extensions: 1357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1286
Number of HSP's gapped (non-prelim): 65
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.