Guide to the Human Genome
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Name: PDPN Sequence: fasta or formatted (236aa) NCBI GI: 54792058
Description:

lung type-I cell membrane-associated glycoprotein isoform b

Referenced in:

Lung

Other entries for this name:
alt prot [238aa] lung type-I cell membrane-associated glycoprotein isoform a
alt prot [120aa] lung type-I cell membrane-associated glycoprotein isoform c
alt prot [118aa] lung type-I cell membrane-associated glycoprotein isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         20           1
 C cysteine            0.4          1           1
 D aspartate           3.8          9           2
 E glutamate           5.5         13           1
 F phenylalanine       2.5          6           1
 G glycine             9.3         22           2
 H histidine           0.8          2           1
 I isoleucine          4.2         10           2
 K lysine              3.0          7           1
 L leucine            10.2         24           3
 M methionine          2.1          5           1
 N asparagine          1.7          4           2
 P proline             8.1         19           3
 Q glutamine           2.5          6           1
 R arginine            4.7         11           1
 S serine             10.6         25           2
 T threonine          10.6         25           2
 V valine              9.3         22           3
 W tryptophan          1.7          4           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lung type-I cell membrane-associated glycoprotein is... 
PDPN                  0.993   lung type-I cell membrane-associated glycoprotein is...
PDPN                  0.458   lung type-I cell membrane-associated glycoprotein is...
PDPN                  0.453   lung type-I cell membrane-associated glycoprotein is...
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC729792             0.030   PREDICTED: hypothetical protein 
LOC100294501          0.030   PREDICTED: hypothetical protein 
LOC100294249          0.030   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.030   PREDICTED: hypothetical protein 
LOC100294204          0.030   PREDICTED: hypothetical protein 
LOC100294136          0.030   PREDICTED: hypothetical protein 
LOC100294091          0.030   PREDICTED: hypothetical protein 
LOC730401             0.030   PREDICTED: hypothetical protein 
QSER1                 0.023   glutamine and serine rich 1 
ZXDC                  0.021   ZXD family zinc finger C isoform 2 
ZXDC                  0.021   ZXD family zinc finger C isoform 1 
NAV2                  0.018   neuron navigator 2 isoform 3 
NAV2                  0.018   neuron navigator 2 isoform 1 
NAV2                  0.018   neuron navigator 2 isoform 2 
FN1                   0.016   fibronectin 1 isoform 3 preproprotein 
FN1                   0.016   fibronectin 1 isoform 1 preproprotein 
FN1                   0.016   fibronectin 1 isoform 4 preproprotein 
FN1                   0.016   fibronectin 1 isoform 5 preproprotein 
FN1                   0.016   fibronectin 1 isoform 2 preproprotein 
FN1                   0.016   fibronectin 1 isoform 6 preproprotein 
FJX1                  0.016   four jointed box 1 
QSOX2                 0.016   quiescin Q6 sulfhydryl oxidase 2 
LOC100130716          0.016   PREDICTED: similar to mucin 11 
MUC3A                 0.016   PREDICTED: mucin 3A, cell surface associated, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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