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Search of human proteins with 224458295
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224458295 hypothetical protein LOC374973 [Homo sapiens]
(206 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224458295 hypothetical protein LOC374973 [Homo sapiens] 434 e-122
gi|149999378 inverted formin 2 isoform 2 [Homo sapiens] 34 0.10
gi|149999380 inverted formin 2 isoform 1 [Homo sapiens] 34 0.10
gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.13
gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.13
gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens] 33 0.13
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 33 0.13
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 33 0.13
gi|154800453 tastin isoform 1 [Homo sapiens] 33 0.17
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 33 0.22
gi|32967601 ankyrin 3 isoform 1 [Homo sapiens] 33 0.22
gi|117938310 sine oculis binding protein homolog [Homo sapiens] 33 0.22
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 32 0.29
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 32 0.29
gi|153792074 proline rich 12 [Homo sapiens] 32 0.29
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 32 0.38
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 32 0.38
gi|55741677 SET domain containing 1A [Homo sapiens] 32 0.38
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 32 0.38
gi|148727370 immediate early response 5-like [Homo sapiens] 32 0.38
gi|55956914 myosin binding protein H [Homo sapiens] 32 0.38
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 32 0.50
gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo sapi... 31 0.65
gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo sapi... 31 0.65
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 31 0.65
gi|239749482 PREDICTED: hypothetical protein [Homo sapiens] 31 0.65
gi|239743620 PREDICTED: hypothetical protein [Homo sapiens] 31 0.65
gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [H... 31 0.65
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 31 0.65
gi|210032580 SET domain containing 1B [Homo sapiens] 31 0.65
>gi|224458295 hypothetical protein LOC374973 [Homo sapiens]
Length = 206
Score = 434 bits (1117), Expect = e-122
Identities = 206/206 (100%), Positives = 206/206 (100%)
Query: 1 MDSQQEDLRFPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRREEHAQQWVEVMRAATF 60
MDSQQEDLRFPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRREEHAQQWVEVMRAATF
Sbjct: 1 MDSQQEDLRFPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRREEHAQQWVEVMRAATF 60
Query: 61 TYSPLLYWINKRRRYGMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNP 120
TYSPLLYWINKRRRYGMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNP
Sbjct: 61 TYSPLLYWINKRRRYGMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNP 120
Query: 121 KAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPER 180
KAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPER
Sbjct: 121 KAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPER 180
Query: 181 NVLFHSLLNLAQEDHSFNAKPFPSEL 206
NVLFHSLLNLAQEDHSFNAKPFPSEL
Sbjct: 181 NVLFHSLLNLAQEDHSFNAKPFPSEL 206
>gi|149999378 inverted formin 2 isoform 2 [Homo sapiens]
Length = 1240
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/82 (29%), Positives = 30/82 (36%)
Query: 84 GPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARS 143
G PA V + L + + R+ Q S P P PL P P P
Sbjct: 385 GQQPAAAAACEPVDHAQSESILKVSQPRALEQQASTPPPPPPPPLLPGSSAEPPPPPPPP 444
Query: 144 PFPLPIFQEVPFAPPLCNLPPL 165
P P + +P APP LP L
Sbjct: 445 PLPSVGAKALPTAPPPPPLPGL 466
>gi|149999380 inverted formin 2 isoform 1 [Homo sapiens]
Length = 1249
Score = 33.9 bits (76), Expect = 0.10
Identities = 24/82 (29%), Positives = 30/82 (36%)
Query: 84 GPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARS 143
G PA V + L + + R+ Q S P P PL P P P
Sbjct: 385 GQQPAAAAACEPVDHAQSESILKVSQPRALEQQASTPPPPPPPPLLPGSSAEPPPPPPPP 444
Query: 144 PFPLPIFQEVPFAPPLCNLPPL 165
P P + +P APP LP L
Sbjct: 445 PLPSVGAKALPTAPPPPPLPGL 466
>gi|23397666 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 108 PEGRSHADQDSNPKAE-APAPLQPALQLAPQQPQARSPFP------LPIFQEVPFAPPLC 160
P+ + S P A+ APAP QPA PQ P A+ P P Q+ P PP
Sbjct: 218 PQPQPPPQHPSQPSAQSAPAPAQPA----PQPPPAKVSKPSQLQAHTPASQQTPPLPPYA 273
Query: 161 N--LPPLLNHS-VSYPLATCP 178
+ PP+ H+ V+ L T P
Sbjct: 274 SPRSPPVQPHTPVTISLGTAP 294
>gi|223941785 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 108 PEGRSHADQDSNPKAE-APAPLQPALQLAPQQPQARSPFP------LPIFQEVPFAPPLC 160
P+ + S P A+ APAP QPA PQ P A+ P P Q+ P PP
Sbjct: 218 PQPQPPPQHPSQPSAQSAPAPAQPA----PQPPPAKVSKPSQLQAHTPASQQTPPLPPYA 273
Query: 161 N--LPPLLNHS-VSYPLATCP 178
+ PP+ H+ V+ L T P
Sbjct: 274 SPRSPPVQPHTPVTISLGTAP 294
>gi|223941782 transcriptional co-repressor Sin3A [Homo sapiens]
Length = 1273
Score = 33.5 bits (75), Expect = 0.13
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 108 PEGRSHADQDSNPKAE-APAPLQPALQLAPQQPQARSPFP------LPIFQEVPFAPPLC 160
P+ + S P A+ APAP QPA PQ P A+ P P Q+ P PP
Sbjct: 218 PQPQPPPQHPSQPSAQSAPAPAQPA----PQPPPAKVSKPSQLQAHTPASQQTPPLPPYA 273
Query: 161 N--LPPLLNHS-VSYPLATCP 178
+ PP+ H+ V+ L T P
Sbjct: 274 SPRSPPVQPHTPVTISLGTAP 294
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 67 YWINKRRRYGMNAAINTGPAPAVTKT---ETEVQNPDVLWDLDIPEGRS-----HADQDS 118
+++N RRR+ + + A T+ + + ++P G+S A
Sbjct: 385 FFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQ 444
Query: 119 NPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQ-EVPFAPPLCNLPPLLNHSVSY 172
P+ P+P P+ P P A P P+ + +P AP L PP L +
Sbjct: 445 APRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARF 499
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 33.5 bits (75), Expect = 0.13
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 67 YWINKRRRYGMNAAINTGPAPAVTKT---ETEVQNPDVLWDLDIPEGRS-----HADQDS 118
+++N RRR+ + + A T+ + + ++P G+S A
Sbjct: 327 FFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEEAQTPQ 386
Query: 119 NPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQ-EVPFAPPLCNLPPLLNHSVSY 172
P+ P+P P+ P P A P P+ + +P AP L PP L +
Sbjct: 387 APRTLGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARF 441
>gi|154800453 tastin isoform 1 [Homo sapiens]
Length = 778
Score = 33.1 bits (74), Expect = 0.17
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 84 GPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARS 143
GP A ++E E+ P + L++PE P AE P PL+ + P+ P++
Sbjct: 521 GPPEAFCRSEPEIPEPSLQEQLEVPE--------PYPPAE-PRPLESCCRSEPEIPESSR 571
Query: 144 PFPLPIFQEVPFAPP-----LCNLPPLLNHSVSYPLATCPE 179
L + + P A P C + P + S PE
Sbjct: 572 QEQLEVPEPCPPAEPRPLESYCRIEPEIPESSRQEQLEVPE 612
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 32.7 bits (73), Expect = 0.22
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 118 SNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPF-APPLCNLPP 164
S+P+ P P P L AP QP + P +P P APP PP
Sbjct: 1953 SSPETPPPPPPPPPLPPAPPQPSSMGPVKIPNTVSTPLQAPPPTPPPP 2000
>gi|32967601 ankyrin 3 isoform 1 [Homo sapiens]
Length = 4377
Score = 32.7 bits (73), Expect = 0.22
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 105 LDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQ-ARSPFPLPIFQEVPFAP 157
L+ P+ S DQD +P +++ + + P PQ A S P P+F EVP P
Sbjct: 2109 LESPDDFSQHDQDKSPLSDSG--FETRSEKTPSAPQSAESTGPKPLFHEVPIPP 2160
>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
Length = 873
Score = 32.7 bits (73), Expect = 0.22
Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 20/108 (18%)
Query: 76 GMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNP--KAEAPAPLQPALQ 133
G +A+ P+ + T++ P +P+ ++ + P + PA + P L
Sbjct: 325 GPSASTTVSPSDTANCSVTKIPTP-------VPKSIPISETPNIPPVSVQPPASIGPPLG 377
Query: 134 LAPQQPQA----RSPFPLPIFQE----VPFAPPLCNLPPLLNHSVSYP 173
+ P+ P R P PLPIF E PP PP H S P
Sbjct: 378 VPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPP---HHASNP 422
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 32.3 bits (72), Expect = 0.29
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P S ++P P P P + P P S P+P+ VP PP+ +PP+
Sbjct: 169 PTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
Score = 31.6 bits (70), Expect = 0.50
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPE 179
P P P P+L P P P P+P VP PP+ +P + + P++ P
Sbjct: 187 PPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPP 246
Query: 180 RN 181
N
Sbjct: 247 LN 248
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 32.3 bits (72), Expect = 0.29
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P S ++P P P P + P P S P+P+ VP PP+ +PP+
Sbjct: 169 PTFSSTVPSTASPMNTVPPPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPI 226
Score = 31.6 bits (70), Expect = 0.50
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPE 179
P P P P+L P P P P+P VP PP+ +P + + P++ P
Sbjct: 187 PPPIPPIPAMPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPP 246
Query: 180 RN 181
N
Sbjct: 247 LN 248
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 32.3 bits (72), Expect = 0.29
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 116 QDSNPKAEAPAPL-QPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPP 164
++ P PAP QP P PQ P P P+ P +PP LPP
Sbjct: 1454 EEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPP 1503
Score = 28.5 bits (62), Expect = 4.2
Identities = 22/59 (37%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 125 PAPLQPALQLAPQ----QPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPE 179
P P QPAL P P + P PLP P PP PP + PLA PE
Sbjct: 1475 PPPPQPALPSPPPLVAPTPSSPPPPPLP-----PPPPPAMPSPPPPPPPAAAPLAAPPE 1528
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 32.0 bits (71), Expect = 0.38
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P A P+ P+ PQ P + PL + + P APP PPL
Sbjct: 483 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPL 528
Score = 30.0 bits (66), Expect = 1.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 118 SNPKAEAPAPLQ-PALQLAPQQPQARSPFPLPIFQEVPFAP 157
+ P +AP PL P LQLA PQA P Q +P P
Sbjct: 495 ATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPP 535
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 32.0 bits (71), Expect = 0.38
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P A P+ P+ PQ P + PL + + P APP PPL
Sbjct: 444 PSPPASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPL 489
Score = 30.0 bits (66), Expect = 1.4
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 118 SNPKAEAPAPLQ-PALQLAPQQPQARSPFPLPIFQEVPFAP 157
+ P +AP PL P LQLA PQA P Q +P P
Sbjct: 456 ATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPP 496
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 32.0 bits (71), Expect = 0.38
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 85 PAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSP 144
PAP V V +PE + + + P E+P P+ L P +P A P
Sbjct: 1089 PAPVEVPVPERVAGSPVT---PLPEQEASPARPAGPTEESP----PSAPLRPPEPPAGPP 1141
Query: 145 FPLPIFQEVPFAP-PLCNLPPLLNHSVSY 172
P P E P +P PL P +VS+
Sbjct: 1142 APAPRPDERPSSPIPLLPPPKKRRKTVSF 1170
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 32.0 bits (71), Expect = 0.38
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 114 ADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEV--PFAPPLCNLPPLLNHSVS 171
+ +++ + AP P LQ P Q +SP P P V P APP PP V+
Sbjct: 890 SSSETSSRLPAPTPSDFQLQFPPSQGPHKSPTPPPTLHLVPEPAAPP--PPPPRTFQMVT 947
Query: 172 YPLATCPERNVL---FHSL 187
P P+ L FH +
Sbjct: 948 TPFPALPQPKALLERFHQV 966
Score = 31.6 bits (70), Expect = 0.50
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVSYPLATCPE 179
P +AP + L L QQPQA+ P P Q APP P S LA+ PE
Sbjct: 623 PAPQAPPAVSTPLPLGLQQPQAQQPPQAPTPQAA--APPQATTP-----QPSPGLASSPE 675
Query: 180 RNVL 183
+ VL
Sbjct: 676 KIVL 679
Score = 30.0 bits (66), Expect = 1.4
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 120 PKAEAPAPLQPALQ---LAPQQPQAR-SPFPLPIFQEVPFAPPLCNLPPLLNHSVSY--P 173
P A+ PAP P + L PQ P ++ SP P P ++P A PL P + S+ + P
Sbjct: 728 PPAQDPAPATPVAKGAGLGPQAPDSQASPAPAP---QIPAAAPLKGPGPSSSPSLPHQAP 784
Query: 174 LATCP 178
L P
Sbjct: 785 LGDSP 789
Score = 27.7 bits (60), Expect = 7.2
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 7/41 (17%)
Query: 118 SNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPP 158
SNP AP P QP L+ Q P+ PLP P PP
Sbjct: 848 SNPAPTAPGPPQPPLRPQSQPPEG----PLP---PAPHLPP 881
>gi|148727370 immediate early response 5-like [Homo sapiens]
Length = 404
Score = 32.0 bits (71), Expect = 0.38
Identities = 22/60 (36%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 105 LDIPEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPP 164
L P G H Q P PAPL L L P P A P P AP C+ PP
Sbjct: 162 LQPPHGAPHRGQPLEPLQPGPAPL--PLPLPPPAPAALCP-------RDPRAPAACSAPP 212
>gi|55956914 myosin binding protein H [Homo sapiens]
Length = 477
Score = 32.0 bits (71), Expect = 0.38
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 82 NTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQDSN----PKAEAPAPLQPALQLAPQ 137
NT PA + ET ++ V P G + + PK +APAP P A +
Sbjct: 5 NTSEGPACSPEETASESAKV--PTAEPPGEVAVSESTREEQVPKPQAPAPQAPTASTATK 62
Query: 138 QPQARSPFPLPIFQEVPFAPPLCNLPPLLNHSVS 171
P P ++VP AP L L + + SV+
Sbjct: 63 --------PAPPSEDVPSAPLLLTLDDVSSSSVT 88
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 31.6 bits (70), Expect = 0.50
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQL--APQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P RS Q + +PL PALQ AP P A SP PLP P PP PP+
Sbjct: 77 PRRRSPGPQGGGG-GDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSP--PPSPPSPPV 133
Query: 166 LNHSVSYPLATCPE 179
S P P+
Sbjct: 134 PTAQSSLPAPWPPQ 147
>gi|186700625 Rab-like GTP-binding protein 1 isoform 2 [Homo
sapiens]
Length = 520
Score = 31.2 bits (69), Expect = 0.65
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 93 ETEVQNPDVLWDLDIPEGRSHAD------QDSNPKAEAPAPLQPALQLAPQQPQARSPFP 146
ETE QN + ++ R HA Q +P +++P A+ P P P
Sbjct: 262 ETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPGTPQPAP 321
Query: 147 -LPIF----QEVPFAPPLCNLPPLLNHSVSYPLATCPERNVL 183
LP+ VP PP LPP + P A P R+++
Sbjct: 322 QLPLNAAPPSSVPPVPPSEALPP-----PACPSAPAPRRSII 358
>gi|186700623 Rab-like GTP-binding protein 1 isoform 1 [Homo
sapiens]
Length = 729
Score = 31.2 bits (69), Expect = 0.65
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 93 ETEVQNPDVLWDLDIPEGRSHAD------QDSNPKAEAPAPLQPALQLAPQQPQARSPFP 146
ETE QN + ++ R HA Q +P +++P A+ P P P
Sbjct: 262 ETEDQNYGIFLEMMEARSRGHASPLAANGQSPSPGSQSPVVPAGAVSTGSSSPGTPQPAP 321
Query: 147 -LPIF----QEVPFAPPLCNLPPLLNHSVSYPLATCPERNVL 183
LP+ VP PP LPP + P A P R+++
Sbjct: 322 QLPLNAAPPSSVPPVPPSEALPP-----PACPSAPAPRRSII 358
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 31.2 bits (69), Expect = 0.65
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Query: 58 ATFTYSPLLYWINKRRRYGMNAAINTGPAPAVTKTETEVQNPDVLWDLDIPEGRSHADQD 117
ATF + L + + RR +GP P + Q+P + G
Sbjct: 355 ATFKAAALKAAVPRARRSANRLPRPSGPRPRPAPARSPSQSPAGTPCPVLSLGARRGVTL 414
Query: 118 SNPKAEAPAPLQ-----PALQLAPQQPQARSPFPLP----IFQEVPFAPPL 159
P AP PAL+ +P+QP AR+P P P P+APP+
Sbjct: 415 PCPVPAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDACPWAPPV 465
>gi|239749482 PREDICTED: hypothetical protein [Homo sapiens]
Length = 195
Score = 31.2 bits (69), Expect = 0.65
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQL--APQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P RS Q + +PL PALQ AP P A SP PLP P PP +LP
Sbjct: 77 PRRRSPGPQGGGG-GDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSP--PPRPSLPSG 133
Query: 166 LNHSVSYPLATCPERNVLFHSL 187
+ V P A R L L
Sbjct: 134 PHRPVLPPSALAAPRPPLARPL 155
>gi|239743620 PREDICTED: hypothetical protein [Homo sapiens]
Length = 285
Score = 31.2 bits (69), Expect = 0.65
Identities = 30/82 (36%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQL--APQQPQARSPFPLPIFQEVPFAPPLCNLPPL 165
P RS Q + +PL PALQ AP P A SP PLP P PP +LP
Sbjct: 77 PRRRSPGPQGGGG-GDIASPLPPALQPRGAPAVPAAPSPGPLPARPSSP--PPRPSLPSG 133
Query: 166 LNHSVSYPLATCPERNVLFHSL 187
+ V P A R L L
Sbjct: 134 PHRPVLPPSALAAPRPPLARPL 155
>gi|55770852 glutamate receptor, ionotropic, delta 1 precursor [Homo
sapiens]
Length = 1009
Score = 31.2 bits (69), Expect = 0.65
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 15/160 (9%)
Query: 10 FPGMWVSLYFGILGLCSVITGGCIIFLHWRKNLRREEHAQQWVEV------MRAATFTYS 63
F G++ L G+L C V + L W N +E ++ EV R +
Sbjct: 831 FAGVFCILAIGLLLACLVAA----LELWWNSNRCHQETPKEDKEVNLEQVHRRMNSLMDE 886
Query: 64 PLLYWINKRRRYGMNAAINTGPAPAVTKTET-EVQNPDVLWDLDIPEGRSHADQ---DSN 119
+ + ++A G AP T T E QN + +PE SH S
Sbjct: 887 DIAHKQISPASIELSALEMGGLAPTQTLEPTREYQNTQLSVSTFLPEQSSHGTSRTLSSG 946
Query: 120 PKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPL 159
P + P PL + + Q + RSP +F++ P P+
Sbjct: 947 PSSNLPLPLSSSATMPSMQCKHRSPNG-GLFRQSPVKTPI 985
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 31.2 bits (69), Expect = 0.65
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 108 PEGRSHADQDSNPKAEAPAPLQPALQLAPQQPQARSPFPLPIFQEVPFAPPLCNLPPLLN 167
P + A P APLQP Q+ PQ P P+P+ + + LPP L
Sbjct: 765 PASQVGAPAQLKPLQMPQAPLQPLAQVPPQMP------PIPVVPPITPLAGIDGLPPAL- 817
Query: 168 HSVSYPLATCP 178
P AT P
Sbjct: 818 --PDLPTATVP 826
Score = 28.1 bits (61), Expect = 5.5
Identities = 20/72 (27%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 106 DIPEGRSHADQDSNPKAEAPA-------------PLQPALQLAPQQPQARSPFPLPIFQE 152
D+P H Q+ PA P QP L P P + P P+
Sbjct: 923 DVPPSPHHTVQNMRATPPQPALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLPP 982
Query: 153 VPFAPPLCNLPP 164
P PP LPP
Sbjct: 983 QPMLPPQPVLPP 994
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 31.2 bits (69), Expect = 0.65
Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 90 TKTETEVQNPDVLWDLDIPEGRSHADQDSNPKAEA-----------PAPLQPALQL-APQ 137
T T +E P +L +P GR D+ S P A P PL L L A
Sbjct: 1390 TPTFSEPSGPLLLPVCPLPTGRR--DERSGPLASPVLLETGLPLPLPLPLPLPLALPAVL 1447
Query: 138 QPQARSPFPLPIFQEVPFAP-PLCNLPPLLNHSVSYPLATCP 178
+ QAR+P PLP P P PL + PP + P + P
Sbjct: 1448 RAQARAPTPLP-----PLLPAPLASCPPPMKRKPGRPRRSPP 1484
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,699,425
Number of Sequences: 37866
Number of extensions: 509630
Number of successful extensions: 2842
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 2572
Number of HSP's gapped (non-prelim): 369
length of query: 206
length of database: 18,247,518
effective HSP length: 97
effective length of query: 109
effective length of database: 14,574,516
effective search space: 1588622244
effective search space used: 1588622244
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.