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Search of human proteins with 223941836
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223941836 abhydrolase domain containing 11 7 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223941836 abhydrolase domain containing 11 7 [Homo sapiens] 374 e-104
gi|23200008 abhydrolase domain containing 11 isoform 1 [Homo sap... 197 3e-51
gi|223941839 abhydrolase domain containing 11 isoform 8 [Homo sa... 197 3e-51
gi|23200018 abhydrolase domain containing 11 isoform 5 [Homo sap... 196 7e-51
gi|23200012 abhydrolase domain containing 11 isoform 2 [Homo sap... 176 1e-44
gi|67782356 corneodesmosin precursor [Homo sapiens] 37 0.010
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.048
gi|123173757 RAVER1 [Homo sapiens] 32 0.40
gi|117938759 GNAS complex locus XLas [Homo sapiens] 30 1.2
gi|166158925 endothelial cell growth factor 1 (platelet-derived)... 30 1.5
gi|4503445 endothelial cell growth factor 1 (platelet-derived) p... 30 1.5
gi|166158922 endothelial cell growth factor 1 (platelet-derived)... 30 1.5
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 30 1.5
gi|55749742 HEAT repeat containing 5B [Homo sapiens] 30 1.5
gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo ... 30 1.5
gi|156416026 zinc finger protein 219 [Homo sapiens] 30 1.5
gi|156415998 zinc finger protein 219 [Homo sapiens] 30 1.5
gi|156415996 zinc finger protein 219 [Homo sapiens] 30 1.5
gi|48762934 alpha 2 type I collagen [Homo sapiens] 29 2.0
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 29 2.0
gi|7705318 GULP, engulfment adaptor PTB domain containing 1 [Hom... 29 2.6
gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo ... 29 2.6
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 29 2.6
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 28 3.4
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 28 3.4
gi|58530886 interleukin-1 receptor-associated kinase 2 [Homo sap... 28 3.4
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 28 3.4
gi|117938768 GNAS complex locus alex [Homo sapiens] 28 4.5
gi|239752532 PREDICTED: similar to Putative uncharacterized prot... 28 4.5
gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo ... 28 4.5
>gi|223941836 abhydrolase domain containing 11 7 [Homo sapiens]
Length = 184
Score = 374 bits (959), Expect = e-104
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRISIGAGPCLGACTLSMKGPACSLG 120
DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRISIGAGPCLGACTLSMKGPACSLG
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRISIGAGPCLGACTLSMKGPACSLG 120
Query: 121 MTGSSPPLMAAHSSVLLLLEIPGVSFLAFSEIATQPGQPFRDVVTTLGPALLWQSGPRFF 180
MTGSSPPLMAAHSSVLLLLEIPGVSFLAFSEIATQPGQPFRDVVTTLGPALLWQSGPRFF
Sbjct: 121 MTGSSPPLMAAHSSVLLLLEIPGVSFLAFSEIATQPGQPFRDVVTTLGPALLWQSGPRFF 180
Query: 181 IWAS 184
IWAS
Sbjct: 181 IWAS 184
>gi|23200008 abhydrolase domain containing 11 isoform 1 [Homo
sapiens]
Length = 315
Score = 197 bits (502), Expect = 3e-51
Identities = 96/97 (98%), Positives = 97/97 (100%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRI 97
DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR+
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRV 97
>gi|223941839 abhydrolase domain containing 11 isoform 8 [Homo
sapiens]
Length = 258
Score = 197 bits (502), Expect = 3e-51
Identities = 96/97 (98%), Positives = 97/97 (100%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRI 97
DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR+
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRV 97
>gi|23200018 abhydrolase domain containing 11 isoform 5 [Homo
sapiens]
Length = 97
Score = 196 bits (499), Expect = 7e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
Query: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR 96
DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR
Sbjct: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR 96
>gi|23200012 abhydrolase domain containing 11 isoform 2 [Homo
sapiens]
Length = 308
Score = 176 bits (446), Expect = 1e-44
Identities = 89/97 (91%), Positives = 90/97 (92%), Gaps = 7/97 (7%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLL 60
MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEP RLL
Sbjct: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEP-------RLL 53
Query: 61 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRI 97
DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRR+
Sbjct: 54 DGEAALPAVVFLHGLFGSKTNFNSIAKILAQQTGRRV 90
>gi|67782356 corneodesmosin precursor [Homo sapiens]
Length = 529
Score = 37.0 bits (84), Expect = 0.010
Identities = 43/151 (28%), Positives = 57/151 (37%), Gaps = 30/151 (19%)
Query: 25 GPHGPSFARVPVAPS-SSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFLHGLFGSKTNFN 83
GP PS +RVP + S SSS G L Y + P G F S ++
Sbjct: 389 GPCSPSSSRVPSSSSISSSSG----------LPYHPCGSASQSPCSPPGTGSFSSSSSSQ 438
Query: 84 SIAKILAQQTGRRISIGAGPCLGACTLSMKGPACSLGMTGSSPPLMAAHSSVLLLLEIPG 143
S KI+ Q G + S PC+ +L++ G G GS P +A G
Sbjct: 439 SSGKIILQPCGSKSSSSGHPCMSVSSLTLTG-----GPDGSPHPDPSA-----------G 482
Query: 144 VSFLAFSEIATQPGQPFRDV---VTTLGPAL 171
S P + RD+ V LGP L
Sbjct: 483 AKPCGSSSAGKIPCRSIRDILAQVKPLGPQL 513
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.7 bits (78), Expect = 0.048
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 25 GPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLLDGEAALPAV 69
GPHGP V P SSG G P P P+ + L GE LP V
Sbjct: 653 GPHGPPGVPGSVGPKGSSGSPGPQGP-PGPVGLQGLRGEVGLPGV 696
>gi|123173757 RAVER1 [Homo sapiens]
Length = 756
Score = 31.6 bits (70), Expect = 0.40
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 10/48 (20%)
Query: 15 RAWRLPRE-GLGPHGPSFARVPVAPSS----SSGGRGGAEPRPLPLSY 57
R + PRE LGPHGPS ++ PS SSGG GG PLS+
Sbjct: 613 RLFSHPREPALGPHGPSRHKMSPPPSGFGERSSGGSGGG-----PLSH 655
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 30.0 bits (66), Expect = 1.2
Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 19/79 (24%)
Query: 24 LGPHGPSFARVPVAP--------SSSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFLHGL 75
L P GP A VP AP + +G RGG P P LDGE
Sbjct: 184 LAPGGPGAAGVPGAPPEEPQALRPAKAGSRGGYSPPPEETMPFELDGEG----------- 232
Query: 76 FGSKTNFNSIAKILAQQTG 94
FG + +++++AQ G
Sbjct: 233 FGDDSPPPGLSRVIAQVDG 251
>gi|166158925 endothelial cell growth factor 1 (platelet-derived)
precursor [Homo sapiens]
Length = 482
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 161 RDVVTTLGPALLWQSG 176
RD+VTTLG ALLW SG
Sbjct: 303 RDLVTTLGGALLWLSG 318
>gi|4503445 endothelial cell growth factor 1 (platelet-derived)
precursor [Homo sapiens]
Length = 482
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 161 RDVVTTLGPALLWQSG 176
RD+VTTLG ALLW SG
Sbjct: 303 RDLVTTLGGALLWLSG 318
>gi|166158922 endothelial cell growth factor 1 (platelet-derived)
precursor [Homo sapiens]
Length = 482
Score = 29.6 bits (65), Expect = 1.5
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 161 RDVVTTLGPALLWQSG 176
RD+VTTLG ALLW SG
Sbjct: 303 RDLVTTLGGALLWLSG 318
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 101 AGPCLGACTLSMKGPACSLGMTGSSPPLMAAHSSVLLLLEIPGVSFLAFSEIATQPGQPF 160
AGP L +++GP G PP + ++L LL + +++ + P +
Sbjct: 48 AGPAL--LVAALEGPDAGTEEQGPGPPQLLVSRALLRLLALGSGAWVRARAVRRPPALGW 105
Query: 161 RDVVTTLGPALLWQSGP 177
+ T+LGP L + GP
Sbjct: 106 ALLGTSLGPGLGPRVGP 122
>gi|55749742 HEAT repeat containing 5B [Homo sapiens]
Length = 2071
Score = 29.6 bits (65), Expect = 1.5
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 11/49 (22%)
Query: 27 HGPS--FARVPVAPSSSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFLH 73
H PS + R+P G A P PLPL ++D AL VVF H
Sbjct: 755 HDPSSIYLRIPA---------GEAVPGPLPLGVSVIDASVALFGVVFPH 794
>gi|13540582 Williams-Beuren syndrome chromosome region 16 [Homo
sapiens]
Length = 464
Score = 29.6 bits (65), Expect = 1.5
Identities = 24/55 (43%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 29 PSFARVPVAPSSSSGGRGGAEPRP--LPLSYRL-LDGEAALPAVVFLHGLFGSKT 80
PSF V PSS G R GA PR P+ YRL LD + + A + L SKT
Sbjct: 75 PSF----VVPSSGPGPRAGARPRRRIQPVPYRLELDQKISSAACGYGFTLLSSKT 125
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 22/64 (34%)
Query: 13 WTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFL 72
W PR GP R P +P + G E PL LS R G A P
Sbjct: 587 WVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALH 646
Query: 73 HGLF 76
LF
Sbjct: 647 RCLF 650
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 22/64 (34%)
Query: 13 WTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFL 72
W PR GP R P +P + G E PL LS R G A P
Sbjct: 587 WVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALH 646
Query: 73 HGLF 76
LF
Sbjct: 647 RCLF 650
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 29.6 bits (65), Expect = 1.5
Identities = 20/64 (31%), Positives = 22/64 (34%)
Query: 13 WTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLLDGEAALPAVVFL 72
W PR GP R P +P + G E PL LS R G A P
Sbjct: 587 WVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRGGEAEPLDLSLRAGPGGEAGPGGALH 646
Query: 73 HGLF 76
LF
Sbjct: 647 RCLF 650
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 29.3 bits (64), Expect = 2.0
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 25 GPHGPSFARVPVAPSSSSGGRGGAEPRPLPLSYRLLD------GEAALPAVVFLHGLFG 77
GP G + A+ P P GG+G P P P ++ L GE P LHG FG
Sbjct: 523 GPDGNNGAQGPPGPQGVQGGKGEQGP-PGPPGFQGLPGPSGPAGEVGKPGERGLHGEFG 580
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 29.3 bits (64), Expect = 2.0
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 13/45 (28%)
Query: 20 PREGLGPHGPSFARVPVAPS-------SSSGG------RGGAEPR 51
P++G GP GP ++P P S+ GG RGG EPR
Sbjct: 198 PKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHPKPPHRGGGEPR 242
>gi|7705318 GULP, engulfment adaptor PTB domain containing 1 [Homo
sapiens]
Length = 304
Score = 28.9 bits (63), Expect = 2.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 5 QQLASMLRWTRAWRLPREGLGPHGPS---FARVPVAP---SSSSGGRGGAEPRPLP 54
Q L + LR T+ P + P PS F +P +P SS R G +P P+P
Sbjct: 188 QDLENQLRITQVSAPPAGSMTPKSPSTDIFDMIPFSPISHQSSMPTRNGTQPPPVP 243
>gi|239752224 PREDICTED: hypothetical protein XP_002348163 [Homo
sapiens]
Length = 284
Score = 28.9 bits (63), Expect = 2.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 101 AGPCLGACTLSMKGPACSLGMTGSSPPLMAAHSSVLLL 138
A P LG + S PACSL +PPL + SS +L
Sbjct: 3 APPLLGFLSPSPSPPACSLPTAAPAPPLRPSPSSKTVL 40
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 28.9 bits (63), Expect = 2.6
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 27/128 (21%)
Query: 26 PHGPSFARVPVAPSSSSGGRGGA-----------EPRPLPLSYRLLDGEAALPAVVFLHG 74
P PSF APS +GG GGA P P + G + PA+ L+
Sbjct: 63 PSSPSFC----APSPGTGGGGGAGGGGGSSQAGGAPGPPSGGPGAVGGTSGKPALEDLYW 118
Query: 75 LFGSKTNFNSIAKILAQQTGRRISIGAG----------PCLGACTLSMKGPACSLGMTGS 124
+ G + + N A L + IG+G P A + +GP + G G
Sbjct: 119 MSGYQHHLNPEALNLTPEDAVEALIGSGHHGAHHGAHHPAAAAAYEAFRGPGFAGG--GG 176
Query: 125 SPPLMAAH 132
+ + A H
Sbjct: 177 ADDMGAGH 184
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 21 REGLGPHGPS---------FARVPVAPSSSSGGRGGAEPRPLPLS 56
R LG GPS +R+P+ PSS RG RP+PLS
Sbjct: 330 RRSLGSAGPSGTLPRSWQPVSRIPMPPSSPQP-RGAPRQRPIPLS 373
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 28.5 bits (62), Expect = 3.4
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 21 REGLGPHGPS---------FARVPVAPSSSSGGRGGAEPRPLPLS 56
R LG GPS +R+P+ PSS RG RP+PLS
Sbjct: 330 RRSLGSAGPSGTLPRSWQPVSRIPMPPSSPQP-RGAPRQRPIPLS 373
>gi|58530886 interleukin-1 receptor-associated kinase 2 [Homo
sapiens]
Length = 625
Score = 28.5 bits (62), Expect = 3.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 44 GRGGAEPRPLPLSYRLLDGEAALPAVVFLHGLFGSKTNFNSIAKILAQ 91
G+GG++P P P + G L AV +LHGL +N S +L Q
Sbjct: 300 GQGGSDPLPWPQRVSICSG--LLCAVEYLHGLEIIHSNVKSSNVLLDQ 345
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 25 GPHGPSFARVPVAPSSSSGGRGGAEPRPLP 54
GPHGP + P P SSG +G P+ P
Sbjct: 682 GPHGPLGPQGPPGPQGSSGPQGHMGPQGPP 711
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 28.1 bits (61), Expect = 4.5
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 1 MRAGQQLASMLRWTRAWRLPREGLGPHGPSFARVPVAPSSSSGGRGGAEPRPLP---LSY 57
+R GQ ++ LR T+ LP+ L P P A P+ P P P L
Sbjct: 418 LRPGQPMSPQLRQTQGLPLPQPLLPPGQPKSAGRPLQPLPPGPDARSISDPPAPRSRLPI 477
Query: 58 RLLDG 62
RLL G
Sbjct: 478 RLLRG 482
>gi|239752532 PREDICTED: similar to Putative uncharacterized
protein FLJ46348, partial [Homo sapiens]
Length = 178
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 20 PREGLGPHGPSFARVPVAP---SSSSGGRGGAEPRPLPLSYRLL 60
PR GL G P P S SGG+ A RPLP ++RLL
Sbjct: 9 PRRGLLGPGSRLGAAPAGPAPASRPSGGQAHASWRPLP-AWRLL 51
>gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo
sapiens]
Length = 203
Score = 28.1 bits (61), Expect = 4.5
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 20 PREGLGPHGPSFARVPVAP---SSSSGGRGGAEPRPLPLSYRLL 60
PR GL G P +P S SGG+ A RPLP ++RLL
Sbjct: 34 PRRGLLGPGSRLGAAPGSPAPASRPSGGQAHASGRPLP-AWRLL 76
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,534,229
Number of Sequences: 37866
Number of extensions: 423451
Number of successful extensions: 1898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1790
Number of HSP's gapped (non-prelim): 143
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.