Guide to the Human Genome
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Name: PLP1 Sequence: fasta or formatted (277aa) NCBI GI: 41349499
Description:

proteolipid protein 1 isoform 1

Referenced in:

Oligodendrocytes and Myelin

Other entries for this name:
alt mRNA [277aa] proteolipid protein 1 isoform 1
alt prot [242aa] proteolipid protein 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         30           3
 C cysteine            5.1         14           2
 D aspartate           1.4          4           1
 E glutamate           2.9          8           1
 F phenylalanine       8.3         23           3
 G glycine            10.5         29           2
 H histidine           2.5          7           1
 I isoleucine          4.7         13           1
 K lysine              4.3         12           1
 L leucine            10.8         30           3
 M methionine          1.8          5           1
 N asparagine          2.2          6           1
 P proline             2.2          6           1
 Q glutamine           2.9          8           1
 R arginine            2.5          7           1
 S serine              5.4         15           1
 T threonine           8.3         23           2
 V valine              6.9         19           2
 W tryptophan          1.4          4           1
 Y tyrosine            5.1         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   proteolipid protein 1 isoform 1 
PLP1                  1.000   proteolipid protein 1 isoform 1 
PLP1                  0.825   proteolipid protein 1 isoform 2 
GPM6B                 0.460   glycoprotein M6B isoform 4 
GPM6B                 0.456   glycoprotein M6B isoform 2 
GPM6B                 0.456   glycoprotein M6B isoform 3 
GPM6B                 0.433   glycoprotein M6B isoform 1 
GPM6A                 0.324   glycoprotein M6A isoform 3 
GPM6A                 0.320   glycoprotein M6A isoform 2 
GPM6A                 0.320   glycoprotein M6A isoform 1 
TMC4                  0.011   transmembrane channel-like 4 isoform 2 
TMC4                  0.011   transmembrane channel-like 4 isoform 1 
C3                    0.007   complement component 3 precursor 
LOC653879             0.007   PREDICTED: similar to complement component 3 
BEST2                 0.007   vitelliform macular dystrophy 2-like 1 
ZNF814                0.005   zinc finger protein 814 
LOC100293516          0.005   PREDICTED: similar to zinc finger protein 587 [Homo...
ZNF552                0.005   zinc finger protein 552 
SCAMP4                0.005   secretory carrier membrane protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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