Guide to the Human Genome
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Name: NFKBIL1 Sequence: fasta or formatted (358aa) NCBI GI: 222352177
Description:

nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {381aa} nuclear factor of kappa light polypeptide gene enhancer in B-cell...
alt prot {366aa} nuclear factor of kappa light polypeptide gene enhancer in B-cell...
alt prot {343aa} nuclear factor of kappa light polypeptide gene enhancer in B-cell...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         43           3
 C cysteine            1.4          5           1
 D aspartate           5.3         19           2
 E glutamate          10.9         39           5
 F phenylalanine       2.5          9           2
 G glycine             8.1         29           3
 H histidine           3.1         11           1
 I isoleucine          0.8          3           1
 K lysine              2.2          8           1
 L leucine             8.9         32           3
 M methionine          1.4          5           1
 N asparagine          0.6          2           1
 P proline             7.3         26           3
 Q glutamine           7.5         27           4
 R arginine           14.2         51           2
 S serine              5.3         19           2
 T threonine           2.2          8           1
 V valine              2.5          9           1
 W tryptophan          2.8         10           1
 Y tyrosine            0.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclear factor of kappa light polypeptide gene enha... 
NFKBIL1               1.000   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.941   nuclear factor of kappa light polypeptide gene enha...
NFKBIL1               0.941   nuclear factor of kappa light polypeptide gene enha...
TCHH                  0.041   trichohyalin 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.039   GRB10 interacting GYF protein 2 isoform b 
CALD1                 0.035   caldesmon 1 isoform 1 
PPP1R12B              0.035   protein phosphatase 1, regulatory (inhibitor) subuni...
PPP1R12B              0.035   protein phosphatase 1, regulatory (inhibitor) subunit...
LOC100133599          0.034   PREDICTED: hypothetical protein 
MAP7                  0.034   microtubule-associated protein 7 
LOC100286959          0.034   PREDICTED: hypothetical protein XP_002343921 
INCENP                0.032   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.032   inner centromere protein antigens 135/155kDa isofor...
NFKB2                 0.031   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.031   nuclear factor of kappa light polypeptide gene enha...
NFKB2                 0.031   nuclear factor of kappa light polypeptide gene enha...
LOC100288837          0.031   PREDICTED: hypothetical protein XP_002343931, parti...
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100133220          0.028   PREDICTED: hypothetical protein 
APOB48R               0.028   apolipoprotein B48 receptor 
BAT2D1                0.028   HBxAg transactivated protein 2 
MINK1                 0.028   misshapen/NIK-related kinase isoform 4 
MINK1                 0.028   misshapen/NIK-related kinase isoform 2 
MINK1                 0.028   misshapen/NIK-related kinase isoform 3 
MINK1                 0.028   misshapen/NIK-related kinase isoform 1 
MAP7D1                0.027   MAP7 domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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