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Search of human proteins with 223633997
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens]
(467 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens] 964 0.0
gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens] 929 0.0
gi|38488716 DEP domain containing 1 isoform b [Homo sapiens] 461 e-130
gi|166295188 DEP domain containing 1 isoform a [Homo sapiens] 317 1e-86
gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens] 84 2e-16
gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens] 84 2e-16
gi|22748695 DEP domain containing 4 [Homo sapiens] 62 1e-09
gi|85815829 SH3-domain binding protein 1 [Homo sapiens] 46 6e-05
gi|215820652 StAR-related lipid transfer (START) domain containi... 42 0.001
gi|215820650 StAR-related lipid transfer (START) domain containi... 42 0.001
gi|31543659 StAR-related lipid transfer (START) domain containin... 42 0.001
gi|67906814 Rho GTPase activating protein 19 [Homo sapiens] 42 0.001
gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens] 41 0.003
gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens] 41 0.003
gi|40255080 hypothetical protein LOC158763 [Homo sapiens] 40 0.003
gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo sap... 40 0.005
gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo sap... 40 0.005
gi|54860079 nadrin isoform 1 [Homo sapiens] 39 0.008
gi|54860105 nadrin isoform 2 [Homo sapiens] 39 0.008
gi|189571664 DEP domain containing 6 [Homo sapiens] 39 0.010
gi|39932589 Rho GTPase activating protein 18 [Homo sapiens] 39 0.010
gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens] 39 0.013
gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo sapi... 39 0.013
gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo sapi... 39 0.013
gi|41281907 StAR-related lipid transfer (START) domain containin... 38 0.022
gi|16445031 StAR-related lipid transfer (START) domain containin... 38 0.022
gi|41281898 StAR-related lipid transfer (START) domain containin... 38 0.022
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens] 37 0.038
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 37 0.038
gi|23510413 sorting nexin 26 [Homo sapiens] 36 0.065
>gi|223633997 DEP domain containing 1B isoform 2 [Homo sapiens]
Length = 467
Score = 964 bits (2491), Expect = 0.0
Identities = 467/467 (100%), Positives = 467/467 (100%)
Query: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS
Sbjct: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
Query: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP
Sbjct: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
Query: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA 180
NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA
Sbjct: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA 180
Query: 181 NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP 240
NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP
Sbjct: 181 NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP 240
Query: 241 HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG 300
HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG
Sbjct: 241 HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG 300
Query: 301 LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF 360
LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF
Sbjct: 301 LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF 360
Query: 361 SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQKSYP 420
SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQKSYP
Sbjct: 361 SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQKSYP 420
Query: 421 EVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM 467
EVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM
Sbjct: 421 EVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM 467
>gi|223633999 DEP domain containing 1B isoform 1 [Homo sapiens]
Length = 529
Score = 929 bits (2401), Expect = 0.0
Identities = 465/529 (87%), Positives = 467/529 (88%), Gaps = 62/529 (11%)
Query: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS
Sbjct: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
Query: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP
Sbjct: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
Query: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA 180
NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA
Sbjct: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA 180
Query: 181 NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP 240
NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP
Sbjct: 181 NVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQGVVILDDKSKELP 240
Query: 241 HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG 300
HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG
Sbjct: 241 HWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLG 300
Query: 301 LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF 360
LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF
Sbjct: 301 LLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTF 360
Query: 361 SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQ------ 414
SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQ
Sbjct: 361 SRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRRVQIKYPGA 420
Query: 415 ---------------------FQKSY---------------------------------- 419
+Q+SY
Sbjct: 421 DMDITLSAPSFCRQISPEEFEYQRSYGSQEPLAALLEEVITDAKLSNKEKKKKLKQFQKS 480
Query: 420 -PEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM 467
PEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM
Sbjct: 481 YPEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKPFQPFQRTRSFRM 529
>gi|38488716 DEP domain containing 1 isoform b [Homo sapiens]
Length = 527
Score = 461 bits (1187), Expect = e-130
Identities = 231/426 (54%), Positives = 311/426 (73%), Gaps = 22/426 (5%)
Query: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
ME + V PGPYRAT+LWNE FRA MPLRKHR FK Y +CFTA EAVDWL++LLR +
Sbjct: 1 MESQGVPPGPYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNN 60
Query: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
NFGPEVTR+QT+QLL+KFLKNHVIEDIKG+WG E+ +DN L+RFP +SPLK P++ P
Sbjct: 61 SNFGPEVTRQQTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFPATSPLKTLPRRYP 120
Query: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVH------- 173
+ N++ S++ + + S KRH + + + ++ H
Sbjct: 121 ELRK-------NNI-ENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQ 172
Query: 174 -----RRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQG 228
R+L++ +VEE+W+ + L YLQ ILG+ SLEEV++ K V ++I++N+ + SK+G
Sbjct: 173 ENAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIPQYIMYNMANTSKRG 232
Query: 229 VVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLT 288
VVIL +KS +LPHWVLSAMKCLANWP +D+ P Y+GFE+DVF+TIADY+ L EPLLT
Sbjct: 233 VVILQNKSDDLPHWVLSAMKCLANWPRSNDMNNPTYVGFERDVFRTIADYFLDLPEPLLT 292
Query: 289 FHLFDAFVSVLGLLQK--EKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPL 346
F ++ FV++LGLLQ E+VA++A Q+CCLLLPP NRRKLQLLMRM++R+ N +MP L
Sbjct: 293 FEYYELFVNILGLLQPHLERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDMPKL 352
Query: 347 CDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEER 406
D GTR+LM+ TFSRC+LC +EVDLDELLA RLV+FLMD++QEIL+VP LQT++E+
Sbjct: 353 HDAMGTRSLMIHTFSRCVLCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKH 412
Query: 407 VAHLRR 412
+ +L++
Sbjct: 413 LDYLKK 418
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 359 TFSRCILCSKDEVDLDELLAARL-VTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQK 417
T+S C S E D ++ ++ + L++N + +PL +E+ L+ QFQK
Sbjct: 434 TYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPL------KEKRKKLK--QFQK 485
Query: 418 SYPEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKP 455
YP +YQ+RFPT ES A LF +KP K +L+ L+KP
Sbjct: 486 EYPLIYQKRFPTTESEAALFGDKPTIKQPMLI--LRKP 521
>gi|166295188 DEP domain containing 1 isoform a [Homo sapiens]
Length = 811
Score = 317 bits (813), Expect = 1e-86
Identities = 159/311 (51%), Positives = 216/311 (69%), Gaps = 20/311 (6%)
Query: 1 MEHRIVGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCS 60
ME + V PGPYRAT+LWNE FRA MPLRKHR FK Y +CFTA EAVDWL++LLR +
Sbjct: 1 MESQGVPPGPYRATKLWNEVTTSFRAGMPLRKHRQHFKKYGNCFTAGEAVDWLYDLLRNN 60
Query: 61 QNFGPEVTRKQTVQLLKKFLKNHVIEDIKGKWGEEDFEDNRHLYRFPPSSPLKPYPKKPP 120
NFGPEVTR+QT+QLL+KFLKNHVIEDIKG+WG E+ +DN L+RFP +SPLK P++ P
Sbjct: 61 SNFGPEVTRQQTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFPATSPLKTLPRRYP 120
Query: 121 NQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVH------- 173
+ N++ S++ + + S KRH + + + ++ H
Sbjct: 121 ELRK-------NNI-ENFSKDKDSIFKLRNLSRRTPKRHGLHLSQENGEKIKHEIINEDQ 172
Query: 174 -----RRQLTEANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKFIIHNVYSVSKQG 228
R+L++ +VEE+W+ + L YLQ ILG+ SLEEV++ K V ++I++N+ + SK+G
Sbjct: 173 ENAIDNRELSQEDVEEVWRYVILIYLQTILGVPSLEEVINPKQVIPQYIMYNMANTSKRG 232
Query: 229 VVILDDKSKELPHWVLSAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLT 288
VVIL +KS +LPHWVLSAMKCLANWP +D+ P Y+GFE+DVF+TIADY+ L EPLLT
Sbjct: 233 VVILQNKSDDLPHWVLSAMKCLANWPRSNDMNNPTYVGFERDVFRTIADYFLDLPEPLLT 292
Query: 289 FHLFDAFVSVL 299
F ++ FV++L
Sbjct: 293 FEYYELFVNIL 303
Score = 146 bits (369), Expect = 3e-35
Identities = 68/108 (62%), Positives = 91/108 (84%)
Query: 305 EKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCI 364
E+VA++A Q+CCLLLPP NRRKLQLLMRM++R+ N +MP L D GTR+LM+ TFSRC+
Sbjct: 595 ERVAIDALQLCCLLLPPPNRRKLQLLMRMISRMSQNVDMPKLHDAMGTRSLMIHTFSRCV 654
Query: 365 LCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTSIEERVAHLRR 412
LC +EVDLDELLA RLV+FLMD++QEIL+VP LQT++E+ + +L++
Sbjct: 655 LCCAEEVDLDELLAGRLVSFLMDHHQEILQVPSYLQTAVEKHLDYLKK 702
Score = 52.0 bits (123), Expect = 1e-06
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 11/98 (11%)
Query: 359 TFSRCILCSKDEVDLDELLAARL-VTFLMDNYQEILKVPLALQTSIEERVAHLRRVQFQK 417
T+S C S E D ++ ++ + L++N + +PL +E+ L+ QFQK
Sbjct: 718 TYSYCKQISAQEFDEQKVSTSQAAIAELLENIIKNRSLPL------KEKRKKLK--QFQK 769
Query: 418 SYPEVYQERFPTPESAALLFPEKPKPKPQLLMWALKKP 455
YP +YQ+RFPT ES A LF +KP K +L+ L+KP
Sbjct: 770 EYPLIYQKRFPTTESEAALFGDKPTIKQPMLI--LRKP 805
>gi|116256344 novel 58.3 KDA protein isoform 2 [Homo sapiens]
Length = 502
Score = 84.3 bits (207), Expect = 2e-16
Identities = 100/425 (23%), Positives = 187/425 (44%), Gaps = 41/425 (9%)
Query: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 19 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 78
Query: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 79 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 128
Query: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 129 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 187
Query: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 188 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 247
Query: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 248 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 305
Query: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 306 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 363
Query: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 364 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 420
Query: 403 IEERV 407
+ ++
Sbjct: 421 VSVKL 425
>gi|116256342 novel 58.3 KDA protein isoform 1 [Homo sapiens]
Length = 511
Score = 84.3 bits (207), Expect = 2e-16
Identities = 100/425 (23%), Positives = 187/425 (44%), Gaps = 41/425 (9%)
Query: 6 VGPGPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGP 65
V P+ AT +W+ + + ++ ++K R R K + CF +EAVD + L ++ FG
Sbjct: 28 VAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHLIQNKYFGD 87
Query: 66 -EVTRKQTVQLLKKFLKNHVIEDIK----GKWGEEDFEDNR-HLYRFPPSSPLKPYPKKP 119
++ R + V++ + + V E + GK + FED+ LYRF
Sbjct: 88 VDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTI---------- 137
Query: 120 PNQKDVIKFPEWNDLPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTE 179
PNQ + E P + + + ++ + ++++ + + L+
Sbjct: 138 PNQDSQLG-KENKLYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSP 196
Query: 180 ANVEEIWKSMTLSYLQKILGLDSLEEVLDVKLVNSKF-------IIHNVYSVSKQGVVIL 232
+ E+W+ T+ L +++ L L+ +L + K + N + +G++
Sbjct: 197 QVINEVWQEETIGRLLQLVDLPLLDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKA 256
Query: 233 DDKSKELPHWVLSAMKCLANWPNC-------SDLKQPMYLGFEKDV-FKTIADYYGHLKE 284
S+E W+ +A+ CL P+ S +QP K++ F I YY +E
Sbjct: 257 YSDSQE-DEWLSAAIDCLEYLPDQMVVEISRSFPEQPDRTDLVKELLFDAIGRYYSS-RE 314
Query: 285 PLLTFHLFDAFVSVLGLLQ--KEKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
PLL HL D + LL K ++A+EA Q+ LL +NR + + L+ MA + N
Sbjct: 315 PLLN-HLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFRRLLYFMA-VAANPS 372
Query: 343 MPPLCDGFGTRTLMVQTFSRCILCSKDEVDLDELLAARLVTFLMDNYQEILKVPLALQTS 402
L R ++ + FS+ I+ D +L + LV FLMD+ +++ K+P L
Sbjct: 373 EFKLQKESDNRMVVKRIFSKAIV---DNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI 429
Query: 403 IEERV 407
+ ++
Sbjct: 430 VSVKL 434
>gi|22748695 DEP domain containing 4 [Homo sapiens]
Length = 294
Score = 62.0 bits (149), Expect = 1e-09
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 13/208 (6%)
Query: 9 GPYRATRLWNETVELFRAKMPLRKHRCRFKSYEHCFTAAEAVD-WLHELLRCSQNFGPEV 67
GP++AT+LW+ + +A++ +++ R ++Y+ CFT ++AVD L L++ + ++
Sbjct: 56 GPFQATQLWDGIIHSLQAQVEIKRRRHHLQTYKDCFTGSDAVDVVLSHLMQNTCLSSNDI 115
Query: 68 TRKQTVQLLKKFLKNHVIEDIK-----GKWGEEDFED-NRHLYRFPPSSPLKPYPKKPPN 121
+ + V L + + + V E + K E +FED N LYRF + K+
Sbjct: 116 SCLKGVHLCQVLMNHKVFEPVGMKKLFKKEKELEFEDSNISLYRFLGNKSSYDCCKR--- 172
Query: 122 QKDVIKFPEWND-LPPGTSQENIPVRPVVMNSEMWYKRHSIAIGEVPACRLVHRRQLTEA 180
QKD E+N+ L PG + P+ + + H+I + ++
Sbjct: 173 QKDAEN--EFNETLRPGYEMISNPLAQEIGEERIEELIHTINGNPALCPNITVQKPFLRL 230
Query: 181 NVEEIWKSMTLSYLQKILGLDSLEEVLD 208
+ E++WK TL L +++ L L+ +L+
Sbjct: 231 SKEDVWKEQTLLCLLQLIHLPFLDNILE 258
>gi|85815829 SH3-domain binding protein 1 [Homo sapiens]
Length = 701
Score = 46.2 bits (108), Expect = 6e-05
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 275 IADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMM 334
+ Y L EPL+TF L+D ++ L ++ ++A Q C LPPEN L+ LM+ +
Sbjct: 348 LKSYLRELPEPLMTFDLYDDWMRAASL-KEPGARLQALQEVCSRLPPENLSNLRYLMKFL 406
Query: 335 ARICLNKEM 343
AR+ +E+
Sbjct: 407 ARLAEEQEV 415
>gi|215820652 StAR-related lipid transfer (START) domain containing
8 isoform b [Homo sapiens]
Length = 1023
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + Y+ L EP+ T L F+ + LL K++ A Q LLLP ENR LQ
Sbjct: 639 DVADLLKQYFRDLPEPIFTSKLTTTFLQIYQLLPKDQWLAAA-QAATLLLPDENREVLQT 697
Query: 330 LMRMMARICLNKE 342
L+ ++ I +E
Sbjct: 698 LLYFLSDIASAEE 710
>gi|215820650 StAR-related lipid transfer (START) domain containing
8 isoform a [Homo sapiens]
Length = 1103
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + Y+ L EP+ T L F+ + LL K++ A Q LLLP ENR LQ
Sbjct: 719 DVADLLKQYFRDLPEPIFTSKLTTTFLQIYQLLPKDQWLAAA-QAATLLLPDENREVLQT 777
Query: 330 LMRMMARICLNKE 342
L+ ++ I +E
Sbjct: 778 LLYFLSDIASAEE 790
>gi|31543659 StAR-related lipid transfer (START) domain containing 8
isoform b [Homo sapiens]
Length = 1023
Score = 42.0 bits (97), Expect = 0.001
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + Y+ L EP+ T L F+ + LL K++ A Q LLLP ENR LQ
Sbjct: 639 DVADLLKQYFRDLPEPIFTSKLTTTFLQIYQLLPKDQWLAAA-QAATLLLPDENREVLQT 697
Query: 330 LMRMMARICLNKE 342
L+ ++ I +E
Sbjct: 698 LLYFLSDIASAEE 710
>gi|67906814 Rho GTPase activating protein 19 [Homo sapiens]
Length = 494
Score = 42.0 bits (97), Expect = 0.001
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVA-----------VEAFQICCLL 318
DV + + G L EPLLT F+A + + L+Q + +EA Q+ L+
Sbjct: 175 DVATLLKMFLGELPEPLLTHKHFNAHLKIADLMQFDDKGNKTNIPDKDRQIEALQLLFLI 234
Query: 319 LPPENRRKLQLLMRMM 334
LPP NR L+LL+ ++
Sbjct: 235 LPPPNRNLLKLLLDLL 250
>gi|33188433 deleted in liver cancer 1 isoform 1 [Homo sapiens]
Length = 1528
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + Y+ L EPL+T L + F+ + + K++ ++A + +LLP ENR LQ
Sbjct: 1145 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQ-RLQAIKAAIMLLPDENREVLQT 1203
Query: 330 LMRMMARICL---NKEMPP----LC---DGFGTRTLMVQTFSRCILCSK------DEVDL 373
L+ ++ + +M P +C F TL + S ++ K D+ DL
Sbjct: 1204 LLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDL 1263
Query: 374 DELLAA 379
+E LAA
Sbjct: 1264 NENLAA 1269
>gi|33188437 deleted in liver cancer 1 isoform 2 [Homo sapiens]
Length = 1091
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 17/126 (13%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + Y+ L EPL+T L + F+ + + K++ ++A + +LLP ENR LQ
Sbjct: 708 DVADMLKQYFRDLPEPLMTNKLSETFLQIYQYVPKDQ-RLQAIKAAIMLLPDENREVLQT 766
Query: 330 LMRMMARICL---NKEMPP----LC---DGFGTRTLMVQTFSRCILCSK------DEVDL 373
L+ ++ + +M P +C F TL + S ++ K D+ DL
Sbjct: 767 LLYFLSDVTAAVKENQMTPTNLAVCLAPSLFHLNTLKRENSSPRVMQRKQSLGKPDQKDL 826
Query: 374 DELLAA 379
+E LAA
Sbjct: 827 NENLAA 832
>gi|40255080 hypothetical protein LOC158763 [Homo sapiens]
Length = 547
Score = 40.4 bits (93), Expect = 0.003
Identities = 44/206 (21%), Positives = 93/206 (45%), Gaps = 22/206 (10%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + +++ +K+ LL L+ +F+ L +++++ A Q+ L+PP + L+
Sbjct: 289 DVAALLKEFFRDMKDSLLPDDLYMSFLLTATLKPQDQLS--ALQLLVYLMPPCHSDTLER 346
Query: 330 LMRMMARICLNKEMPPLCDGF------GTRTLMVQTFSRCIL---------CSKDEVDLD 374
L++ + +I N E DG T T + F +L K ++ +D
Sbjct: 347 LLKALHKITENCEDSIGIDGQLVPGNRMTSTNLALVFGSALLKKGKFGKRESRKTKLGID 406
Query: 375 ELLAA-RLVTFLMDNYQEILKVPLALQTSIEERV--AHLRRVQF--QKSYPEVYQERFPT 429
+A+ +V ++DN+ + +VP +Q + +RV + + F +++ ++ R
Sbjct: 407 HYVASVNVVRAMIDNWDVLFQVPPHIQRQVAKRVWKSSPEALDFIRRRNLRKIQSARIKM 466
Query: 430 PESAALLFPEKPKPKPQLLMWALKKP 455
E A L P + + + + A KP
Sbjct: 467 EEDALLSDPVETSAEARAAVLAQSKP 492
>gi|71040096 Rho GTPase activating protein 30 isoform 2 [Homo
sapiens]
Length = 890
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 258 DLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCL 317
DL++ +YL V Y+ L +PLLT+ L+D F +G+ + + V+ ++
Sbjct: 77 DLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEV-LR 135
Query: 318 LLPPENRRKLQLLMRMMARI 337
LP N R L+ LMR + +
Sbjct: 136 ELPVPNYRTLEFLMRHLVHM 155
>gi|71040098 Rho GTPase activating protein 30 isoform 1 [Homo
sapiens]
Length = 1101
Score = 40.0 bits (92), Expect = 0.005
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 258 DLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCL 317
DL++ +YL V Y+ L +PLLT+ L+D F +G+ + + V+ ++
Sbjct: 77 DLRRDVYLQDIHCVSSLCKAYFRELPDPLLTYRLYDKFAEAVGVQLEPERLVKILEV-LR 135
Query: 318 LLPPENRRKLQLLMRMMARI 337
LP N R L+ LMR + +
Sbjct: 136 ELPVPNYRTLEFLMRHLVHM 155
>gi|54860079 nadrin isoform 1 [Homo sapiens]
Length = 881
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 245 SAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQK 304
S +K L +CS + V + Y L EPL+TF+L++ + V + +
Sbjct: 294 SKLKKLKAALDCSTSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASVQDQ 353
Query: 305 EKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCI 364
+K + ++ C LPP+N + L++ +A++ ++ + T + + +
Sbjct: 354 DKKLQDLWR-TCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKM-----TPSNIAIVLGPNL 407
Query: 365 LCSKDEVDLDELLAARLV 382
L +++E L E+ AA V
Sbjct: 408 LWARNEGTLAEMAAATSV 425
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 245 SAMKCLANWPNCSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQK 304
S +K L +CS + V + Y L EPL+TF+L++ + V + +
Sbjct: 294 SKLKKLKAALDCSTSHLDEFYSDPHAVAGALKSYLRELPEPLMTFNLYEEWTQVASVQDQ 353
Query: 305 EKVAVEAFQICCLLLPPENRRKLQLLMRMMARICLNKEMPPLCDGFGTRTLMVQTFSRCI 364
+K + ++ C LPP+N + L++ +A++ ++ + T + + +
Sbjct: 354 DKKLQDLWR-TCQKLPPQNFVNFRYLIKFLAKLAQTSDVNKM-----TPSNIAIVLGPNL 407
Query: 365 LCSKDEVDLDELLAARLV 382
L +++E L E+ AA V
Sbjct: 408 LWARNEGTLAEMAAATSV 425
>gi|189571664 DEP domain containing 6 [Homo sapiens]
Length = 409
Score = 38.9 bits (89), Expect = 0.010
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 20/154 (12%)
Query: 30 LRKHRCRFKSYEHCFTAAEAVDWLHELLRCSQNFGPEVTRKQTVQLLKKFLKNHVIEDIK 89
++ R K+Y +CF A E +DWL E S R+ ++L++K +I +
Sbjct: 50 IKDRRHHLKTYPNCFVAKELIDWLIEHKEASD-------RETAIKLMQKLADRGIIHHVC 102
Query: 90 GKWGEEDFEDNRHLYR-------FPPSSPLKPYPKKPPNQKDVIKFPEWNDLPPGTSQEN 142
+ ++F+D + YR FP + +K + + + + PE N L +E
Sbjct: 103 DE--HKEFKDVKLFYRFRKDDGTFPLDNEVKAF-MRGQRLYEKLMSPE-NTLLQPREEEG 158
Query: 143 IPVRPVVMNSEM--WYKRHSIAIGEVPACRLVHR 174
+ M SE W + A A +L HR
Sbjct: 159 VKYERTFMASEFLDWLVQEGEATTRKEAEQLCHR 192
>gi|39932589 Rho GTPase activating protein 18 [Homo sapiens]
Length = 663
Score = 38.9 bits (89), Expect = 0.010
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 256 CSDLKQPMYLGF-------EKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVA 308
C +L+ Y G + D + + L +PLL+ AF +V L K K
Sbjct: 377 CQELEAKFYEGTFNWESVKQHDAASLLKLFIRELPQPLLSVEYLKAFQAVQNLPTK-KQQ 435
Query: 309 VEAFQICCLLLPPENRRKLQLLMRMMARICLNKE 342
++A + +LLP NR L+ L+ + R+ NKE
Sbjct: 436 LQALNLLVILLPDANRDTLKALLEFLQRVIDNKE 469
>gi|7382480 Rho GTPase activating protein 6 isoform 4 [Homo sapiens]
Length = 771
Score = 38.5 bits (88), Expect = 0.013
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ + +PLLT L+ AF++ L L +E++ Q+ LLPP N L
Sbjct: 261 DVAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLG--TLQLLIYLLPPCNCDTLHR 318
Query: 330 LMRMMARICLNKEMPPLCDG----------------FGTRTLMVQTFSRCILCSKDEVDL 373
L++ ++ + + + DG FG L Q S +
Sbjct: 319 LLQFLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLLHKQKSSDKEFSVQSSARA 378
Query: 374 DELLA-ARLVTFLMDNYQEILKVPLALQTSIEERVAH---------LRRVQFQKSYPEVY 423
+E A +V +++NY+ + VP LQ + + LRR Q S P++
Sbjct: 379 EESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDVVDYLLRRKASQSSSPDML 438
Query: 424 Q 424
Q
Sbjct: 439 Q 439
>gi|95091988 Rho GTPase activating protein 6 isoform 3 [Homo
sapiens]
Length = 765
Score = 38.5 bits (88), Expect = 0.013
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ + +PLLT L+ AF++ L L +E++ Q+ LLPP N L
Sbjct: 464 DVAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLG--TLQLLIYLLPPCNCDTLHR 521
Query: 330 LMRMMARICLNKEMPPLCDG----------------FGTRTLMVQTFSRCILCSKDEVDL 373
L++ ++ + + + DG FG L Q S +
Sbjct: 522 LLQFLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLLHKQKSSDKEFSVQSSARA 581
Query: 374 DELLA-ARLVTFLMDNYQEILKVPLALQTSIEERVAH---------LRRVQFQKSYPEVY 423
+E A +V +++NY+ + VP LQ + + LRR Q S P++
Sbjct: 582 EESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDVVDYLLRRKASQSSSPDML 641
Query: 424 Q 424
Q
Sbjct: 642 Q 642
>gi|95091875 Rho GTPase activating protein 6 isoform 1 [Homo
sapiens]
Length = 974
Score = 38.5 bits (88), Expect = 0.013
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 28/181 (15%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ + +PLLT L+ AF++ L L +E++ Q+ LLPP N L
Sbjct: 464 DVAALLKEFLRDMPDPLLTRELYTAFINTLLLEPEEQLG--TLQLLIYLLPPCNCDTLHR 521
Query: 330 LMRMMARICLNKEMPPLCDG----------------FGTRTLMVQTFSRCILCSKDEVDL 373
L++ ++ + + + DG FG L Q S +
Sbjct: 522 LLQFLSIVARHADDNISKDGQEVTGNKMTSLNLATIFGPNLLHKQKSSDKEFSVQSSARA 581
Query: 374 DELLA-ARLVTFLMDNYQEILKVPLALQTSIEERVAH---------LRRVQFQKSYPEVY 423
+E A +V +++NY+ + VP LQ + + LRR Q S P++
Sbjct: 582 EESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDVVDYLLRRKASQSSSPDML 641
Query: 424 Q 424
Q
Sbjct: 642 Q 642
>gi|41281907 StAR-related lipid transfer (START) domain containing
13 isoform beta [Homo sapiens]
Length = 1105
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ L EPL T L + F+ + + KE+ ++A Q LLL ENR LQ
Sbjct: 722 DVADMVKQFFRDLPEPLFTNKLSETFLHIYQYVSKEQ-RLQAVQAAILLLADENREVLQT 780
Query: 330 LM 331
L+
Sbjct: 781 LL 782
>gi|16445031 StAR-related lipid transfer (START) domain containing
13 isoform gamma [Homo sapiens]
Length = 995
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ L EPL T L + F+ + + KE+ ++A Q LLL ENR LQ
Sbjct: 612 DVADMVKQFFRDLPEPLFTNKLSETFLHIYQYVSKEQ-RLQAVQAAILLLADENREVLQT 670
Query: 330 LM 331
L+
Sbjct: 671 LL 672
>gi|41281898 StAR-related lipid transfer (START) domain containing
13 isoform alpha [Homo sapiens]
Length = 1113
Score = 37.7 bits (86), Expect = 0.022
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 270 DVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQL 329
DV + ++ L EPL T L + F+ + + KE+ ++A Q LLL ENR LQ
Sbjct: 730 DVADMVKQFFRDLPEPLFTNKLSETFLHIYQYVSKEQ-RLQAVQAAILLLADENREVLQT 788
Query: 330 LM 331
L+
Sbjct: 789 LL 790
>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
Length = 1444
Score = 37.0 bits (84), Expect = 0.038
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 256 CSDLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQIC 315
C DL + +YL V Y+ L PLLT+ L++ F + +E + Q
Sbjct: 76 CPDLTREVYLQDIHCVGSLCKLYFRELPNPLLTYELYEKFTEAVSHCPEEG-QLARIQNV 134
Query: 316 CLLLPPENRRKLQLLMRMMARI 337
LPP + R L+ L+R +A I
Sbjct: 135 IQELPPSHYRTLEYLIRHLAHI 156
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 37.0 bits (84), Expect = 0.038
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 275 IADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCLLLPPENRRKLQLLMRMM 334
+ Y L EPL+TF L+D ++ + +++K ++A C LP N ++ L++ +
Sbjct: 327 LKSYLRELPEPLMTFELYDEWIQASNVQEQDK-KLQALWNACEKLPKANHNNIRYLIKFL 385
Query: 335 ARI 337
+++
Sbjct: 386 SKL 388
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 36.2 bits (82), Expect = 0.065
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 258 DLKQPMYLGFEKDVFKTIADYYGHLKEPLLTFHLFDAFVSVLGLLQKEKVAVEAFQICCL 317
+L P +L V Y+ L PLLT+ L+ F + + +E+ V +
Sbjct: 372 ELSGPAFLQDIHSVSSLCKLYFRELPNPLLTYQLYGKFSEAMSVPGEEERLVRVHDV-IQ 430
Query: 318 LLPPENRRKLQLLMRMMARI 337
LPP + R L+ L+R +AR+
Sbjct: 431 QLPPPHYRTLEYLLRHLARM 450
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,832,702
Number of Sequences: 37866
Number of extensions: 941387
Number of successful extensions: 2744
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 2681
Number of HSP's gapped (non-prelim): 92
length of query: 467
length of database: 18,247,518
effective HSP length: 106
effective length of query: 361
effective length of database: 14,233,722
effective search space: 5138373642
effective search space used: 5138373642
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.