Guide to the Human Genome
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Name: CPNE6 Sequence: fasta or formatted (557aa) NCBI GI: 5174421
Description:

copine 6

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         35           2
 C cysteine            2.9         16           1
 D aspartate           6.6         37           2
 E glutamate           5.9         33           2
 F phenylalanine       4.8         27           2
 G glycine             5.7         32           2
 H histidine           1.8         10           1
 I isoleucine          4.1         23           3
 K lysine              4.5         25           3
 L leucine             8.1         45           3
 M methionine          1.8         10           1
 N asparagine          3.4         19           2
 P proline             7.4         41           2
 Q glutamine           4.7         26           1
 R arginine            5.6         31           2
 S serine              8.3         46           2
 T threonine           6.3         35           2
 V valine              7.9         44           2
 W tryptophan          0.9          5           1
 Y tyrosine            3.1         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   copine 6 
CPNE7                 0.627   copine 7 isoform a 
CPNE4                 0.608   copine IV 
CPNE7                 0.540   copine 7 isoform b 
CPNE3                 0.490   copine III 
CPNE2                 0.466   copine II 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform a 
CPNE1                 0.454   copine I isoform b 
CPNE8                 0.421   copine VIII 
CPNE5                 0.410   copine V 
CPNE9                 0.397   copine-like protein 
PRKCB                 0.018   protein kinase C, beta isoform 1 
PRKCB                 0.018   protein kinase C, beta isoform 2 
SYT7                  0.017   synaptotagmin VII 
MCTP1                 0.017   multiple C2 domains, transmembrane 1 isoform S [Homo...
MCTP1                 0.017   multiple C2 domains, transmembrane 1 isoform L [Hom...
SYT3                  0.016   synaptotagmin III 
SYT3                  0.016   synaptotagmin III 
SYT3                  0.016   synaptotagmin III 
SYT6                  0.015   synaptotagmin VI 
SYT9                  0.015   synaptotagmin IX 
PLCD1                 0.015   phospholipase C, delta 1 isoform 2 
PLCD1                 0.015   phospholipase C, delta 1 isoform 1 
SYT10                 0.014   synaptotagmin X 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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