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Search of human proteins with 223005901
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|223005901 GPN-loop GTPase 1 isoform c [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|223005901 GPN-loop GTPase 1 isoform c [Homo sapiens] 582 e-166
gi|223005899 GPN-loop GTPase 1 isoform b [Homo sapiens] 582 e-166
gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens] 582 e-166
gi|223005903 GPN-loop GTPase 1 isoform d [Homo sapiens] 531 e-151
gi|21361523 GPN-loop GTPase 3 [Homo sapiens] 56 3e-08
gi|88759337 ATP binding domain 1 family, member B [Homo sapiens] 53 4e-07
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 39 0.005
gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)... 36 0.035
gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo sap... 36 0.035
gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sap... 36 0.035
gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sap... 36 0.035
gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapi... 36 0.035
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens] 36 0.046
gi|71773110 apolipoprotein A-IV precursor [Homo sapiens] 33 0.30
gi|114155142 nuclear pore complex-associated protein TPR [Homo s... 33 0.30
gi|210032580 SET domain containing 1B [Homo sapiens] 33 0.30
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 33 0.30
gi|118344454 sperm associated antigen 7 [Homo sapiens] 33 0.39
gi|115529449 upstream binding transcription factor, RNA polymera... 33 0.39
gi|115529451 upstream binding transcription factor, RNA polymera... 33 0.39
gi|7657671 upstream binding transcription factor, RNA polymerase... 33 0.39
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 33 0.39
gi|58331177 ermin, ERM-like protein isoform a [Homo sapiens] 32 0.51
gi|58331175 ermin, ERM-like protein isoform b [Homo sapiens] 32 0.51
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 32 0.67
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 32 0.67
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 32 0.67
gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens] 32 0.67
gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo sap... 31 1.1
gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo sap... 31 1.1
>gi|223005901 GPN-loop GTPase 1 isoform c [Homo sapiens]
Length = 295
Score = 582 bits (1499), Expect = e-166
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 60
MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII
Sbjct: 1 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 60
Query: 61 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 120
TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA
Sbjct: 61 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 120
Query: 121 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 180
VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT
Sbjct: 121 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 180
Query: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP
Sbjct: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
Query: 241 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK
Sbjct: 241 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
>gi|223005899 GPN-loop GTPase 1 isoform b [Homo sapiens]
Length = 362
Score = 582 bits (1499), Expect = e-166
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 60
MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII
Sbjct: 68 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 127
Query: 61 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 120
TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA
Sbjct: 128 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 187
Query: 121 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 180
VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT
Sbjct: 188 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 247
Query: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP
Sbjct: 248 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 307
Query: 241 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK
Sbjct: 308 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 362
>gi|223005897 GPN-loop GTPase 1 isoform a [Homo sapiens]
Length = 388
Score = 582 bits (1499), Expect = e-166
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 60
MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII
Sbjct: 94 MKQYGLGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTII 153
Query: 61 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 120
TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA
Sbjct: 154 TEALASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFA 213
Query: 121 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 180
VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT
Sbjct: 214 VEWMQDFEAFQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVT 273
Query: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP
Sbjct: 274 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 333
Query: 241 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK
Sbjct: 334 SDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 388
>gi|223005903 GPN-loop GTPase 1 isoform d [Homo sapiens]
Length = 279
Score = 531 bits (1368), Expect = e-151
Identities = 270/270 (100%), Positives = 270/270 (100%)
Query: 26 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV 85
VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV
Sbjct: 10 VMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALASSFPTVVIYVMDTSRSTNPV 69
Query: 86 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 145
TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT
Sbjct: 70 TFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQDFEAFQDALNQETTYVSNLT 129
Query: 146 RSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAE 205
RSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAE
Sbjct: 130 RSMSLVLDEFYSSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAE 189
Query: 206 SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDID 265
SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDID
Sbjct: 190 SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDID 249
Query: 266 HRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
HRVTEESHEEPAFQNFMQESMAQYWKRNNK
Sbjct: 250 HRVTEESHEEPAFQNFMQESMAQYWKRNNK 279
>gi|21361523 GPN-loop GTPase 3 [Homo sapiens]
Length = 284
Score = 56.2 bits (134), Expect = 3e-08
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 10/161 (6%)
Query: 7 GPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTWSASGTIITEALAS 66
GPNGG+V + FA FD + + ++ Y+L D PGQIE++T + + L
Sbjct: 72 GPNGGLVFCMEYFANNFDWLENCLGHVED--DYILFDCPGQIELYTHLPVMKQLVQQLEQ 129
Query: 67 -SFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDHSFAVEWMQ 125
F ++++D+ F+S +L A S + ++P + +M K D++ E +
Sbjct: 130 WEFRVCGVFLVDSQFMVESFKFISGILAALSAMISLEIPQVNIMTKMDLLSKKAKKEIEK 189
Query: 126 DFEAFQDALNQETT------YVSNLTRSMSLVLDEFYSSLR 160
+ +L +++T LT+++ ++D+ YS +R
Sbjct: 190 FLDPDMYSLLEDSTSDLRSKKFKKLTKAICGLIDD-YSMVR 229
>gi|88759337 ATP binding domain 1 family, member B [Homo sapiens]
Length = 310
Score = 52.8 bits (125), Expect = 4e-07
Identities = 29/113 (25%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 6 LGPNGGIVTSLNLFATRFDQVMKFIEKAQNMSKYVLIDTPGQIEVFTW-SASGTIITEAL 64
LGPNGG++ + D + ++ + Y L D PGQ+E+ T A +I ++
Sbjct: 75 LGPNGGLLYCMEYLEANLDWLRAKLDPLRG--HYFLFDCPGQVELCTHHGALRSIFSQMA 132
Query: 65 ASSFPTVVIYVMDTSRSTNPVTFMSNMLYACSILYKTKLPFIVVMNKTDIIDH 117
++++D+ T+P F+S + + + + +LP I +++K D+I+H
Sbjct: 133 QWDLRLTAVHLVDSHYCTDPAKFISVLCTSLATMLHVELPHINLLSKMDLIEH 185
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 38.9 bits (89), Expect = 0.005
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 178 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPV 237
+ AA+E E + +PE E ++ A E+Q + E +E L V ++ A+ P
Sbjct: 1942 EAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEAL-----EVEVETQEAEGEAQPE 1996
Query: 238 LHPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQES 285
+ G + E +EEA ++D ++ + E E + Q++
Sbjct: 1997 SEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKT 2044
Score = 28.1 bits (61), Expect = 9.6
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 183 AEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDM----GSVALDAGTAKDSLSPVL 238
A+E E E +PE E ++ A E+Q + E +E + S +A A+ P
Sbjct: 1860 AQEAEGEAQPESEDVEAPEAEGEAQPESEDVETPEAEWEVQPESEGAEAPEAEKEAQPET 1919
Query: 239 HPSDLILTRGTLDEEDEEADS 259
+ + T G + E E A++
Sbjct: 1920 ESVEALETEGEDEPESEGAEA 1940
>gi|7019419 guanine nucleotide binding protein-like 2 (nucleolar)
[Homo sapiens]
Length = 731
Score = 36.2 bits (82), Expect = 0.035
Identities = 42/132 (31%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 157 SSLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERL 216
SSL VV +A G + +A E E + E E AN E QQ L R+
Sbjct: 477 SSLEVVPEAAQNNPGEEV----TETAGEGSESIIKEETEENSHCDANTEMQQI---LTRV 529
Query: 217 RKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTL-DEEDEEADSDTDDIDHRVTEESHEE 275
R++ G + + + D L PV SDL + DEE+EE + DD EES E
Sbjct: 530 RQNFGKINVVPQFSGDDLVPV-EVSDLEEELESFSDEEEEEQEQQRDD-----AEESSSE 583
Query: 276 PAFQNFMQESMA 287
P +N ++ A
Sbjct: 584 PEEENVGNDTKA 595
>gi|156766047 GRB10 interacting GYF protein 2 isoform c [Homo
sapiens]
Length = 1293
Score = 36.2 bits (82), Expect = 0.035
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 178 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSL 234
++ EE ER+ R E R ++ L A QQQ++Q ++L G+V+ +GT K L
Sbjct: 942 EIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQKL-SGWGNVSKPSGTTKSLL 997
>gi|156766045 GRB10 interacting GYF protein 2 isoform a [Homo sapiens]
Length = 1320
Score = 36.2 bits (82), Expect = 0.035
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 178 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSL 234
++ EE ER+ R E R ++ L A QQQ++Q ++L G+V+ +GT K L
Sbjct: 969 EIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQKL-SGWGNVSKPSGTTKSLL 1024
>gi|156766043 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 36.2 bits (82), Expect = 0.035
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 178 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSL 234
++ EE ER+ R E R ++ L A QQQ++Q ++L G+V+ +GT K L
Sbjct: 948 EIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQKL-SGWGNVSKPSGTTKSLL 1003
>gi|42476299 GRB10 interacting GYF protein 2 isoform b [Homo sapiens]
Length = 1299
Score = 36.2 bits (82), Expect = 0.035
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 178 QVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSL 234
++ EE ER+ R E R ++ L A QQQ++Q ++L G+V+ +GT K L
Sbjct: 948 EIQKLEEERERQLREEQRRQQRELMKALQQQQQQQQQKL-SGWGNVSKPSGTTKSLL 1003
>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
Length = 1960
Score = 35.8 bits (81), Expect = 0.046
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 183 AEEYEREYRPEYERLKKSLANA----ESQQQREQLERLRKDMGSVALDAGTAKDSLSPVL 238
AEE +R E+ K+L+ A E+ +Q+ +LERL K + D ++KD + +
Sbjct: 1461 AEERDRAEAEAREKETKALSLARALEEAMEQKAELERLNKQFRTEMEDLMSSKDDVGKSV 1520
Query: 239 HPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQY 289
H +L ++ L+++ EE + ++++ + + + +Q AQ+
Sbjct: 1521 H--ELEKSKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNLQAMKAQF 1569
>gi|71773110 apolipoprotein A-IV precursor [Homo sapiens]
Length = 396
Score = 33.1 bits (74), Expect = 0.30
Identities = 40/175 (22%), Positives = 68/175 (38%), Gaps = 18/175 (10%)
Query: 110 NKTDIIDHSFAVEWMQDFEA-FQDALNQETTYVSNLTRSMSLVLDEFYSSLRVVG--VSA 166
N + ++H E Q A FQD L + TY +L + + E + L +
Sbjct: 41 NAKEAVEHLQKSELTQQLNALFQDKLGEVNTYAGDLQKKLVPFATELHERLAKDSEKLKE 100
Query: 167 VLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSL---ANAESQQQREQLERLRKDMGSV 223
+G L+EL ++ A E ++ L++ L A+ Q Q E+LR+ +
Sbjct: 101 EIGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVSTQAEQLRRQLTPY 160
Query: 224 ALDAGTA----KDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHE 274
A DSL L P DE + D + +++ R+T + E
Sbjct: 161 AQRMERVLRENADSLQASLRPH--------ADELKAKIDQNVEELKGRLTPYADE 207
Score = 28.9 bits (63), Expect = 5.6
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 23/171 (13%)
Query: 136 QETTYVSNLTRSMSLVLDEFYSSLRVVG--VSAVLGTGLDELFVQVTSAAEEYEREYRPE 193
Q T Y + R + D +SLR + A + ++EL ++T A+E++ +
Sbjct: 156 QLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQT 215
Query: 194 YERLKKSLA-NAESQQQR--EQLERLRKDM--------GSVALDAGTAKDSLSPVLHPSD 242
E L++SLA A+ Q++ QLE L M ++ A + L+P+
Sbjct: 216 VEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISASAEELRQRLAPLAED-- 273
Query: 243 LILTRGTLDEEDEEADSDTDDIDHRVTEESHE-----EPAFQNFMQESMAQ 288
RG L E ++ + ++ E EP +NF + + Q
Sbjct: 274 ---VRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQ 321
>gi|114155142 nuclear pore complex-associated protein TPR [Homo
sapiens]
Length = 2363
Score = 33.1 bits (74), Expect = 0.30
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 207 QQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTDDIDH 266
+ E + L+ D+G + D T S D+I+ +D +DEE D D +D +H
Sbjct: 1907 EDSEETSQSLQIDLGPLQSDQQTTTSSQDGQGKGDDVIV----IDSDDEEEDDDENDGEH 1962
Query: 267 RVTEESHEE 275
EE E+
Sbjct: 1963 EDYEEDEED 1971
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 33.1 bits (74), Expect = 0.30
Identities = 22/103 (21%), Positives = 46/103 (44%)
Query: 173 DELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKD 232
D+ ++ +++ +E + E E +R +++ + + R+ + LD+G +D
Sbjct: 977 DQKRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPARPLELDSGGEED 1036
Query: 233 SLSPVLHPSDLILTRGTLDEEDEEADSDTDDIDHRVTEESHEE 275
+ + +EE+EE D D DD D R E+ +E
Sbjct: 1037 EKESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDE 1079
>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
[Homo sapiens]
Length = 731
Score = 33.1 bits (74), Expect = 0.30
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 184 EEYEREYRPEYERLK-KSLANAESQQQREQLERLRKDMGSVALD 226
E+ RE PE LK K AE+Q R++LER R+ +GSV D
Sbjct: 368 EQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQD 411
>gi|118344454 sperm associated antigen 7 [Homo sapiens]
Length = 227
Score = 32.7 bits (73), Expect = 0.39
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 167 VLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALD 226
+LG+ L + + +E R+ R + RLKK L E QQ+ E +R+ K++ D
Sbjct: 4 LLGSILSSMEKPPSLGDQETRRKAREQAARLKK-LQEQEKQQKVEFRKRMEKEVSDFIQD 62
Query: 227 AGTAKDSLSP-------VLHPSDLI----LTRGTLDEED----------EEADSDTDDID 265
+G K P +LH D++ LT + E+D E A SD +
Sbjct: 63 SGQIKKKFQPMNKIERSILH--DVVEVAGLTSFSFGEDDDCRYVMIFKKEFAPSDEELDS 120
Query: 266 HRVTEESHEEPAFQNFMQESMAQ 288
+R EE + A + + +AQ
Sbjct: 121 YRRGEEWDPQKAEEKRKLKELAQ 143
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 183 AEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSD 242
AEE +++Y+ + KSL+ + +E + RK M L K S + + S+
Sbjct: 582 AEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSM--TKLRGPNPKSSRTTLQSKSE 639
Query: 243 LILTRGTLDEEDEEADSDTDDIDHRVTEESH 273
EED+E D D +D D ++ +
Sbjct: 640 --------SEEDDEEDEDDEDEDEEEEDDEN 662
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 183 AEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSD 242
AEE +++Y+ + KSL+ + +E + RK M L K S + + S+
Sbjct: 582 AEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSM--TKLRGPNPKSSRTTLQSKSE 639
Query: 243 LILTRGTLDEEDEEADSDTDDIDHRVTEESH 273
EED+E D D +D D ++ +
Sbjct: 640 --------SEEDDEEDEDDEDEDEEEEDDEN 662
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 32.7 bits (73), Expect = 0.39
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
Query: 183 AEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSD 242
AEE +++Y+ + KSL+ + +E + RK M L K S + + S+
Sbjct: 619 AEEQQKQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSM--TKLRGPNPKSSRTTLQSKSE 676
Query: 243 LILTRGTLDEEDEEADSDTDDIDHRVTEESH 273
EED+E D D +D D ++ +
Sbjct: 677 --------SEEDDEEDEDDEDEDEEEEDDEN 699
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 32.7 bits (73), Expect = 0.39
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 181 SAAEEYEREYRPEYERLKKSLANAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHP 240
+A E ERE E ERL + + E ++Q E L S A K SP P
Sbjct: 995 AAVSEEEREAEKEAERLMEQASCWEKEEQ-EILSTRANSRQSPAKVQSKNKYLHSPESRP 1053
Query: 241 SD------LILTRGTLDEEDEEADSDTDDIDHRVTEESHEEPAFQNFMQESMAQ 288
L L++ + +EE+EE D + ++ + E+ EE + +E Q
Sbjct: 1054 VTGERGQLLELSKESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQ 1107
>gi|58331177 ermin, ERM-like protein isoform a [Homo sapiens]
Length = 297
Score = 32.3 bits (72), Expect = 0.51
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 167 VLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQL---------ERLR 217
++ + +L +Q TSA E RE ++E++ S +N E ++Q+E++ + R
Sbjct: 102 IVHKAITDLSLQETSADEMTFREGH-QWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDR 160
Query: 218 KDMGSVALDA---GTAKDSLSPVLHPS----DLILTRGTLDEEDEEADSDTDDIDHRVTE 270
K+ G A + G K S + +LH + D++D+ ++D D++ +
Sbjct: 161 KNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFK 220
Query: 271 ESHEE 275
+ HEE
Sbjct: 221 KKHEE 225
>gi|58331175 ermin, ERM-like protein isoform b [Homo sapiens]
Length = 284
Score = 32.3 bits (72), Expect = 0.51
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 17/125 (13%)
Query: 167 VLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQL---------ERLR 217
++ + +L +Q TSA E RE ++E++ S +N E ++Q+E++ + R
Sbjct: 89 IVHKAITDLSLQETSADEMTFREGH-QWEKIPLSGSNQEIRRQKERITEQPLKEEEDEDR 147
Query: 218 KDMGSVALDA---GTAKDSLSPVLHPS----DLILTRGTLDEEDEEADSDTDDIDHRVTE 270
K+ G A + G K S + +LH + D++D+ ++D D++ +
Sbjct: 148 KNKGHQAAEIEWLGFRKPSQADMLHSKHDEEQKVWDEEIDDDDDDNCNNDEDEVRVIEFK 207
Query: 271 ESHEE 275
+ HEE
Sbjct: 208 KKHEE 212
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 203 NAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTD 262
+AES+ + E+ +L G + G +K V +D D++DEE D + D
Sbjct: 122 DAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAAD-----EDDDDDDEEDDDEDD 176
Query: 263 DIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
D D EE+ E+ + ++++ A+ +++N+
Sbjct: 177 DDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQ 209
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 32.0 bits (71), Expect = 0.67
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 203 NAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTD 262
+AES+ + E+ +L G + G +K V +D D++D+E D D D
Sbjct: 122 DAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAAD------EDDDDDDEEDDDED 175
Query: 263 DIDHRVTEESHEEPAFQNFMQESMAQYWK 291
D D +E EE A QES + K
Sbjct: 176 DDDDDFDDEEAEEKAPVKKGQESFKKQEK 204
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 203 NAESQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEEADSDTD 262
+AES+ + E+ +L G + G +K V +D D++DEE D + D
Sbjct: 122 DAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAAD-----EDDDDDDEEDDDEDD 176
Query: 263 DIDHRVTEESHEEPAFQNFMQESMAQYWKRNNK 295
D D EE+ E+ + ++++ A+ +++N+
Sbjct: 177 DDDDFDDEEAEEKAPVKKSIRDTPAKNAQKSNQ 209
>gi|54792100 erbB-3 isoform 1 precursor [Homo sapiens]
Length = 1342
Score = 32.0 bits (71), Expect = 0.67
Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 158 SLRVVGVSAVLGTGLDELFVQVTSAAEEYEREYRPEYERLKKSLANAESQQQREQLERLR 217
+L VG+S+VLGT E+ + EY R + S + E+L
Sbjct: 1176 TLSSVGLSSVLGT-----------EEEDEDEEYEYMNRRRRHSPPHPPRPSSLEELGYEY 1224
Query: 218 KDMGSVALDAGTAKDSLSPVLHPSDLILTRGTLDEEDEE 256
D+GS L A P LHP ++ T GT +ED E
Sbjct: 1225 MDVGS-DLSASLGSTQSCP-LHPVPIMPTAGTTPDEDYE 1261
>gi|38045890 CUB and Sushi multiple domains 3 isoform 2 [Homo
sapiens]
Length = 3667
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 206 SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILT-RGTLDEEDEEADSDTDDI 264
S++QR Q+ LR LD T+KD LSP HP+D T R E E + +
Sbjct: 351 SEEQRVQVTSLRNS----GLDPNTSKDGLSP--HPADTQSTRRRPRHAEQIERTKELAVV 404
Query: 265 DHRV 268
HRV
Sbjct: 405 THRV 408
>gi|38045888 CUB and Sushi multiple domains 3 isoform 1 [Homo
sapiens]
Length = 3707
Score = 31.2 bits (69), Expect = 1.1
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 206 SQQQREQLERLRKDMGSVALDAGTAKDSLSPVLHPSDLILT-RGTLDEEDEEADSDTDDI 264
S++QR Q+ LR LD T+KD LSP HP+D T R E E + +
Sbjct: 391 SEEQRVQVTSLRNS----GLDPNTSKDGLSP--HPADTQSTRRRPRHAEQIERTKELAVV 444
Query: 265 DHRV 268
HRV
Sbjct: 445 THRV 448
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,818,605
Number of Sequences: 37866
Number of extensions: 399165
Number of successful extensions: 3492
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 3231
Number of HSP's gapped (non-prelim): 306
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.