Guide to the Human Genome
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Name: GPN1 Sequence: fasta or formatted (295aa) NCBI GI: 223005901
Description:

GPN-loop GTPase 1 isoform c

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [388aa] GPN-loop GTPase 1 isoform a
alt prot [362aa] GPN-loop GTPase 1 isoform b
alt prot [279aa] GPN-loop GTPase 1 isoform d
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         20           2
 C cysteine            0.3          1           1
 D aspartate           6.8         20           2
 E glutamate           8.8         26           2
 F phenylalanine       4.7         14           1
 G glycine             4.1         12           2
 H histidine           1.4          4           1
 I isoleucine          4.4         13           2
 K lysine              4.4         13           2
 L leucine             8.8         26           1
 M methionine          4.1         12           1
 N asparagine          4.1         12           2
 P proline             3.1          9           1
 Q glutamine           5.1         15           3
 R arginine            4.4         13           1
 S serine              9.2         27           2
 T threonine           7.5         22           2
 V valine              7.5         22           2
 W tryptophan          1.0          3           1
 Y tyrosine            3.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GPN-loop GTPase 1 isoform c 
GPN1                  1.000   GPN-loop GTPase 1 isoform b 
GPN1                  1.000   GPN-loop GTPase 1 isoform a 
GPN1                  0.908   GPN-loop GTPase 1 isoform d 
GPN3                  0.056   GPN-loop GTPase 3 
GPN2                  0.050   ATP binding domain 1 family, member B 
RP1L1                 0.025   retinitis pigmentosa 1-like 1 
GNL2                  0.020   guanine nucleotide binding protein-like 2 (nucleolar)...
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.020   GRB10 interacting GYF protein 2 isoform b 
MYH9                  0.020   myosin, heavy polypeptide 9, non-muscle 
APOA4                 0.014   apolipoprotein A-IV precursor 
TPR                   0.014   nuclear pore complex-associated protein TPR 
SETD1B                0.014   SET domain containing 1B 
PBXIP1                0.014   pre-B-cell leukemia homeobox interacting protein 1 [...
SPAG7                 0.014   sperm associated antigen 7 
UBTF                  0.014   upstream binding transcription factor, RNA polymera...
UBTF                  0.014   upstream binding transcription factor, RNA polymera...
UBTF                  0.014   upstream binding transcription factor, RNA polymerase...
MYST4                 0.014   MYST histone acetyltransferase (monocytic leukemia)...
ERMN                  0.013   ermin, ERM-like protein isoform a 
ERMN                  0.013   ermin, ERM-like protein isoform b 
NPM1                  0.013   nucleophosmin 1 isoform 3 
NPM1                  0.013   nucleophosmin 1 isoform 2 
NPM1                  0.013   nucleophosmin 1 isoform 1 
ERBB3                 0.013   erbB-3 isoform 1 precursor 
CSMD3                 0.011   CUB and Sushi multiple domains 3 isoform 2 
CSMD3                 0.011   CUB and Sushi multiple domains 3 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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