Guide to the Human Genome
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Name: GPN2 Sequence: fasta or formatted (310aa) NCBI GI: 88759337
Description:

ATP binding domain 1 family, member B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         28           2
 C cysteine            2.6          8           1
 D aspartate           6.1         19           1
 E glutamate           5.8         18           1
 F phenylalanine       4.2         13           2
 G glycine             6.8         21           2
 H histidine           3.5         11           2
 I isoleucine          3.2         10           1
 K lysine              2.9          9           1
 L leucine            14.8         46           2
 M methionine          3.5         11           2
 N asparagine          3.2         10           1
 P proline             4.2         13           2
 Q glutamine           4.8         15           1
 R arginine            4.2         13           2
 S serine              6.1         19           2
 T threonine           3.5         11           2
 V valine              6.1         19           2
 W tryptophan          0.6          2           1
 Y tyrosine            4.5         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP binding domain 1 family, member B 
GPN3                  0.300   GPN-loop GTPase 3 
GPN1                  0.108   GPN-loop GTPase 1 isoform a 
GPN1                  0.083   GPN-loop GTPase 1 isoform b 
GPN1                  0.046   GPN-loop GTPase 1 isoform c 
GPN1                  0.031   GPN-loop GTPase 1 isoform d 
RGSL1                 0.015   regulator of G-protein signaling like 1 
MMAA                  0.013   methylmalonic aciduria type A precursor 
RFC2                  0.008   replication factor C 2 isoform 2 
CLP1                  0.007   ATP/GTP-binding protein isoform 1 
RFC2                  0.007   replication factor C 2 isoform 1 
C1orf112              0.007   hypothetical protein LOC55732 
TUBGCP6               0.007   tubulin, gamma complex associated protein 6 
RAD51L1               0.005   RAD51-like 1 isoform 3 
RAD51L1               0.005   RAD51-like 1 isoform 2 
RAD51L1               0.005   RAD51-like 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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