Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 22218619
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|22218619 WD repeat domain 40A [Homo sapiens]
(453 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22218619 WD repeat domain 40A [Homo sapiens] 939 0.0
gi|61966713 DDB1 and CUL4 associated factor 12-like 2 [Homo sapi... 590 e-169
gi|71284432 WD repeat domain 40B [Homo sapiens] 555 e-158
gi|19913367 transducin beta-like 1Y [Homo sapiens] 42 9e-04
gi|19913365 transducin beta-like 1Y [Homo sapiens] 42 9e-04
gi|15150805 transducin beta-like 1Y [Homo sapiens] 42 9e-04
gi|21536371 telomerase-associated protein 1 [Homo sapiens] 42 0.001
gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo s... 41 0.003
gi|213021190 transducin beta-like 1X isoform b [Homo sapiens] 40 0.006
gi|213021188 transducin beta-like 1X isoform b [Homo sapiens] 40 0.006
gi|213021186 transducin beta-like 1X isoform a [Homo sapiens] 40 0.006
gi|5032159 transducin beta-like 1X isoform a [Homo sapiens] 40 0.006
gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens] 37 0.028
gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens] 37 0.028
gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens] 37 0.028
gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens] 36 0.082
gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens] 36 0.082
gi|17402902 guanine nucleotide binding protein beta-subunit-like... 34 0.24
gi|41281564 WD repeat domain 37 [Homo sapiens] 34 0.24
gi|207029439 retinoblastoma binding protein 4 isoform c [Homo sa... 34 0.31
gi|207029415 retinoblastoma binding protein 4 isoform b [Homo sa... 34 0.31
gi|5032027 retinoblastoma binding protein 4 isoform a [Homo sapi... 34 0.31
gi|16554629 WD repeat domain 5 [Homo sapiens] 34 0.31
gi|16554627 WD repeat domain 5 [Homo sapiens] 34 0.31
gi|20357529 guanine nucleotide-binding protein, beta-2 subunit [... 33 0.41
gi|11321585 guanine nucleotide-binding protein, beta-1 subunit [... 33 0.69
gi|4506439 retinoblastoma binding protein 7 [Homo sapiens] 33 0.69
gi|62234461 Notchless gene homolog isoform a [Homo sapiens] 33 0.69
gi|11055998 guanine nucleotide-binding protein, beta-4 subunit [... 32 0.91
gi|5174447 guanine nucleotide binding protein (G protein), beta ... 32 0.91
>gi|22218619 WD repeat domain 40A [Homo sapiens]
Length = 453
Score = 939 bits (2428), Expect = 0.0
Identities = 453/453 (100%), Positives = 453/453 (100%)
Query: 1 MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNE 60
MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNE
Sbjct: 1 MARKVVSRKRKAPASPGAGSDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVRLQNE 60
Query: 61 TSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTS 120
TSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTS
Sbjct: 61 TSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTS 120
Query: 121 QITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD 180
QITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD
Sbjct: 121 QITKIPILKDREPGGVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD 180
Query: 181 DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKAL 240
DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKAL
Sbjct: 181 DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKAL 240
Query: 241 KDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENV 300
KDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENV
Sbjct: 241 KDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENV 300
Query: 301 CLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQG 360
CLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQG
Sbjct: 301 CLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEHIITVGTGQG 360
Query: 361 SLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNA 420
SLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNA
Sbjct: 361 SLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYFSDIDFFPNA 420
Query: 421 VYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 453
VYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS
Sbjct: 421 VYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 453
>gi|61966713 DDB1 and CUL4 associated factor 12-like 2 [Homo
sapiens]
Length = 463
Score = 590 bits (1521), Expect = e-169
Identities = 296/462 (64%), Positives = 352/462 (76%), Gaps = 21/462 (4%)
Query: 7 SRKRKAPA-SPGAGS---------DAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREVR 56
SRKRKAPA GAGS D +GP L K+++ P +R LV+YLK REV
Sbjct: 8 SRKRKAPAVEAGAGSSSSQGLAAADGEGPL------LPKKQKRPATRRRLVHYLKGREVG 61
Query: 57 LQNETS---YSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCNTLF 113
+ + L GYA Q+LP LL ER+ LGTLNKVFASQWLN RQVVCGTKCNTLF
Sbjct: 62 ARGPAGLQGFEGELRGYAVQRLPELLTERQLDLGTLNKVFASQWLNARQVVCGTKCNTLF 121
Query: 114 VVDVQTSQITKIPILKDREPG-GVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPT 172
VVDVQ+ IT+IP+++D+E G QGCGIHAIELNPS+TLLATGG+NPNSLAIY+LPT
Sbjct: 122 VVDVQSGHITRIPLMRDKEAGLAQAHQGCGIHAIELNPSKTLLATGGENPNSLAIYQLPT 181
Query: 173 LDPVCVGD-DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPV 231
LDP+C+GD GHKDWIF++AW+SDT+AVSGSRDG++ LW + D+ S A H+ +PV
Sbjct: 182 LDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDMFNGSIAWHSEVGLPV 241
Query: 232 YAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLST 291
YAHI + ++ IP+ TNP N KVRALAF+ KN+ELGAVSLDGYFHLWKA +TLS+LLS
Sbjct: 242 YAHIRPRDVEAIPRASTNPSNRKVRALAFSGKNQELGAVSLDGYFHLWKARSTLSRLLSI 301
Query: 292 KLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSFYEH 351
+LPYCRENVCL Y E S+YAVGSQ+HVSFLDPRQ N++ +CSRE G+G+RS+SFY+H
Sbjct: 302 RLPYCRENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIRPLCSREGGTGVRSLSFYQH 361
Query: 352 IITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWRNYF 411
IITVGTG GSLLFYDIRAQ+FLEER S+ S P AG LKL G+GWLN D+ W NYF
Sbjct: 362 IITVGTGHGSLLFYDIRAQKFLEERASSSLDSMPGPAGRKLKLACGRGWLNQDDVWVNYF 421
Query: 412 SDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 453
+ FPNA+YTHCY+ KLFVAGGPLPSGLHGNYAGLWS
Sbjct: 422 GGMGEFPNALYTHCYNWPEMKLFVAGGPLPSGLHGNYAGLWS 463
>gi|71284432 WD repeat domain 40B [Homo sapiens]
Length = 463
Score = 555 bits (1429), Expect = e-158
Identities = 285/465 (61%), Positives = 343/465 (73%), Gaps = 27/465 (5%)
Query: 7 SRKRKAPA-------SPGAG---SDAQGPQFGWDHSLHKRKRLPPVKRSLVYYLKNREV- 55
SRKRKAPA SP G +D +GP L KR+R P RS+ +YLK REV
Sbjct: 8 SRKRKAPAVEADAESSPSQGLAAADGEGPL------LLKRQRRPATYRSMAHYLKVREVG 61
Query: 56 -----RLQNETSYSRVLHGYAAQQLPSLLKEREFHLGTLNKVFASQWLNHRQVVCGTKCN 110
RLQ + L GYA Q+LP LL ER+ LGT+NKVFASQWLN RQVVCGTKCN
Sbjct: 62 GWGPARLQG---FDGELRGYAVQRLPELLTERQLELGTVNKVFASQWLNSRQVVCGTKCN 118
Query: 111 TLFVVDVQTSQITKIPILKDREPG-GVTQQGCGIHAIELNPSRTLLATGGDNPNSLAIYR 169
TLFVVDV++ I +IP+L+D E QQGCGIHAIELNPS+TLLATGG+NPNSLAIY+
Sbjct: 119 TLFVVDVESGHIARIPLLRDSEARLAQDQQGCGIHAIELNPSKTLLATGGENPNSLAIYQ 178
Query: 170 LPTLDPVCVGD-DGHKDWIFSIAWISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSR 228
LP+LDP+C+GD GHKDWIF++AW+SDT+AVSGSRDG++ LW + D + A H+
Sbjct: 179 LPSLDPLCLGDRHGHKDWIFAVAWLSDTVAVSGSRDGTVALWRMDPDKFDDTVAWHSEVG 238
Query: 229 VPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKL 288
+PVYAHI + ++ IP+ NP N KVRALA KN+ELGAVSLDGYFHLWKA + LS+L
Sbjct: 239 LPVYAHIRPRDVEAIPRAIINPSNRKVRALACGGKNQELGAVSLDGYFHLWKAGSALSRL 298
Query: 289 LSTKLPYCRENVCLAYGSEWSVYAVGSQAHVSFLDPRQPSYNVKSVCSRERGSGIRSVSF 348
LS +LPY R+NVCL Y + SVYAVGS +HVSFLD RQ N++ +CSRE G+G+RS+SF
Sbjct: 299 LSIRLPYFRDNVCLTYCDDMSVYAVGSHSHVSFLDLRQDQQNIRPLCSREGGTGVRSLSF 358
Query: 349 YEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGKGWLNHDETWR 408
Y HIITVGTGQGSLLFYD+RAQ+FLEER SA S A L+L G+GWLNH++ W
Sbjct: 359 YRHIITVGTGQGSLLFYDVRAQKFLEERASATLESSSGPARRKLRLACGRGWLNHNDFWV 418
Query: 409 NYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 453
NYF ++ FPNA+YTHCY+ KLFVAGGPLP+GLHGNYAGLWS
Sbjct: 419 NYFGGMEVFPNALYTHCYNWPEMKLFVAGGPLPAGLHGNYAGLWS 463
>gi|19913367 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 42.4 bits (98), Expect = 9e-04
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + CV D H I++I W
Sbjct: 362 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QDACVHDLQAHSKEIYTIKWSPTGPATSN 418
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S M S S D ++ LW+V V T + +H + PVY+
Sbjct: 419 PNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH---QEPVYS------------------ 457
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D Y H+W ++
Sbjct: 458 ------VAFSPDGKYLASGSFDKYVHIWNTQS 483
Score = 37.4 bits (85), Expect = 0.028
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 177 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 228
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N+ L S DG+ +W L+ L
Sbjct: 229 GHDVPS------NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTL 272
>gi|19913365 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 42.4 bits (98), Expect = 9e-04
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + CV D H I++I W
Sbjct: 362 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QDACVHDLQAHSKEIYTIKWSPTGPATSN 418
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S M S S D ++ LW+V V T + +H + PVY+
Sbjct: 419 PNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH---QEPVYS------------------ 457
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D Y H+W ++
Sbjct: 458 ------VAFSPDGKYLASGSFDKYVHIWNTQS 483
Score = 37.4 bits (85), Expect = 0.028
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 177 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 228
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N+ L S DG+ +W L+ L
Sbjct: 229 GHDVPS------NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTL 272
>gi|15150805 transducin beta-like 1Y [Homo sapiens]
Length = 522
Score = 42.4 bits (98), Expect = 9e-04
Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + CV D H I++I W
Sbjct: 362 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QDACVHDLQAHSKEIYTIKWSPTGPATSN 418
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S M S S D ++ LW+V V T + +H + PVY+
Sbjct: 419 PNSSIMLASASFDSTVRLWDVEQGVCTHTLMKH---QEPVYS------------------ 457
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D Y H+W ++
Sbjct: 458 ------VAFSPDGKYLASGSFDKYVHIWNTQS 483
Score = 37.4 bits (85), Expect = 0.028
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 177 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 228
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N+ L S DG+ +W L+ L
Sbjct: 229 GHDVPS------NKDVTSLDWNSDGTLLAMGSYDGFARIWTENGNLASTL 272
>gi|21536371 telomerase-associated protein 1 [Homo sapiens]
Length = 2627
Score = 42.0 bits (97), Expect = 0.001
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 155 LATGGDNPNSLAIYRLPTLDPVCVGDDG--HKDWIFSIAWISDTMAVSGSRDGSMGLWE 211
LATGG + + L PV + H+DW+ AW D + +S S DGS+GLW+
Sbjct: 2076 LATGGRDRSLLCWDVRTPKTPVLIHSFPACHRDWVTGCAWTKDNLLISCSSDGSVGLWD 2134
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPT-LDPVCVGDDGHKDWIFSIAWISD-TMAVS 200
+ A ++ + L+ T ++ S+ ++++P D C+ + ++AW D +MAVS
Sbjct: 2241 VRAAAVSETSGLMLTASED-GSVRLWQVPKEADDTCIPRSSAA--VTAVAWAPDGSMAVS 2297
Query: 201 GSRDGSMGLWEVTDDVLTKSDARH 224
G++ G + LW+ V T H
Sbjct: 2298 GNQAGELILWQEAKAVATAQAPGH 2321
>gi|19913371 transducin (beta)-like 1 X-linked receptor 1 [Homo
sapiens]
Length = 514
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W ++++ + S V H +
Sbjct: 167 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLSENSTSGSTQL-------VLRHCIREG 218
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
+D+P N V +L +N++ L S DG+ +W + L+ L
Sbjct: 219 GQDVPS------NKDVTSLDWNSEGTLLATGSYDGFARIWTKDGNLASTL 262
Score = 31.6 bits (70), Expect = 1.5
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 41/151 (27%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +P+ LLA+ D+ +L I+ + + CV D H I++I W
Sbjct: 352 VNAIKWDPTGNLLASCSDDM-TLKIWSMKQDN--CVHDLQAHNKEIYTIKWSPTGPGTNN 408
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
++ M S S D ++ LW+V + + +H + PVY+
Sbjct: 409 PNANLMLASASFDSTVRLWDVDRGICIHTLTKH---QEPVYS------------------ 447
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAE 282
+AF+ + L + S D H+W +
Sbjct: 448 ------VAFSPDGRYLASGSFDKCVHIWNTQ 472
>gi|213021190 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + VC+ D H I++I W
Sbjct: 364 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QEVCIHDLQAHNKEIYTIKWSPTGPATSN 420
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S+ M S S D ++ LW++ V T + +H + PVY+
Sbjct: 421 PNSNIMLASASFDSTVRLWDIERGVCTHTLTKH---QEPVYS------------------ 459
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D H+W ++
Sbjct: 460 ------VAFSPDGKYLASGSFDKCVHIWNTQS 485
Score = 38.5 bits (88), Expect = 0.013
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 179 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 230
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N L S DG+ +W + L+ L
Sbjct: 231 GHDVPS------NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTL 274
>gi|213021188 transducin beta-like 1X isoform b [Homo sapiens]
Length = 526
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + VC+ D H I++I W
Sbjct: 364 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QEVCIHDLQAHNKEIYTIKWSPTGPATSN 420
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S+ M S S D ++ LW++ V T + +H + PVY+
Sbjct: 421 PNSNIMLASASFDSTVRLWDIERGVCTHTLTKH---QEPVYS------------------ 459
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D H+W ++
Sbjct: 460 ------VAFSPDGKYLASGSFDKCVHIWNTQS 485
Score = 38.5 bits (88), Expect = 0.013
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 179 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 230
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N L S DG+ +W + L+ L
Sbjct: 231 GHDVPS------NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTL 274
>gi|213021186 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + VC+ D H I++I W
Sbjct: 415 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QEVCIHDLQAHNKEIYTIKWSPTGPATSN 471
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S+ M S S D ++ LW++ V T + +H + PVY+
Sbjct: 472 PNSNIMLASASFDSTVRLWDIERGVCTHTLTKH---QEPVYS------------------ 510
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D H+W ++
Sbjct: 511 ------VAFSPDGKYLASGSFDKCVHIWNTQS 536
Score = 38.5 bits (88), Expect = 0.013
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 230 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 281
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N L S DG+ +W + L+ L
Sbjct: 282 GHDVPS------NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTL 325
>gi|5032159 transducin beta-like 1X isoform a [Homo sapiens]
Length = 577
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 41/152 (26%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGD-DGHKDWIFSIAWI-------- 193
++AI+ +PS LLA+ D+ +L I+ + VC+ D H I++I W
Sbjct: 415 VNAIKWDPSGMLLASCSDDM-TLKIWSMK--QEVCIHDLQAHNKEIYTIKWSPTGPATSN 471
Query: 194 --SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKALKDIPKEDTNPD 251
S+ M S S D ++ LW++ V T + +H + PVY+
Sbjct: 472 PNSNIMLASASFDSTVRLWDIERGVCTHTLTKH---QEPVYS------------------ 510
Query: 252 NCKVRALAFNNKNKELGAVSLDGYFHLWKAEN 283
+AF+ K L + S D H+W ++
Sbjct: 511 ------VAFSPDGKYLASGSFDKCVHIWNTQS 536
Score = 38.5 bits (88), Expect = 0.013
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 16/110 (14%)
Query: 182 GHKDWIFSIAW--ISDTMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKA 239
GH+ +F AW +SD +A SGS D + +W + ++ + S V H +
Sbjct: 230 GHESEVFICAWNPVSDLLA-SGSGDSTARIWNLNEN-------SNGGSTQLVLRHCIREG 281
Query: 240 LKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLL 289
D+P N V +L +N L S DG+ +W + L+ L
Sbjct: 282 GHDVPS------NKDVTSLDWNTNGTLLATGSYDGFARIWTEDGNLASTL 325
>gi|75709220 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 37.4 bits (85), Expect = 0.028
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPV--CVGDDGHKDWIFSIAWISDT-MAV 199
+ +I +PS + G +P +L +Y + T C D H D I S+ + S M V
Sbjct: 220 LRSISFHPSGDFILVGTQHP-TLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYV 278
Query: 200 SGSRDGSMGLWE-VTDDVLTKSDARHNVSRV 229
+GS+DG + LW+ V++ +T + H+ + V
Sbjct: 279 TGSKDGCIKLWDGVSNRCITTFEKAHDGAEV 309
>gi|4557491 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 37.4 bits (85), Expect = 0.028
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPV--CVGDDGHKDWIFSIAWISDT-MAV 199
+ +I +PS + G +P +L +Y + T C D H D I S+ + S M V
Sbjct: 220 LRSISFHPSGDFILVGTQHP-TLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYV 278
Query: 200 SGSRDGSMGLWE-VTDDVLTKSDARHNVSRV 229
+GS+DG + LW+ V++ +T + H+ + V
Sbjct: 279 TGSKDGCIKLWDGVSNRCITTFEKAHDGAEV 309
>gi|75709217 cleavage stimulation factor subunit 1 [Homo sapiens]
Length = 431
Score = 37.4 bits (85), Expect = 0.028
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPV--CVGDDGHKDWIFSIAWISDT-MAV 199
+ +I +PS + G +P +L +Y + T C D H D I S+ + S M V
Sbjct: 220 LRSISFHPSGDFILVGTQHP-TLRLYDINTFQCFVSCNPQDQHTDAICSVNYNSSANMYV 278
Query: 200 SGSRDGSMGLWE-VTDDVLTKSDARHNVSRV 229
+GS+DG + LW+ V++ +T + H+ + V
Sbjct: 279 TGSKDGCIKLWDGVSNRCITTFEKAHDGAEV 309
>gi|55743149 WD repeat domain 17 isoform 2 [Homo sapiens]
Length = 1298
Score = 35.8 bits (81), Expect = 0.082
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 SRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAW--ISDTMAVSGSRDGSMG 208
++ ++ATG ++ N Y + D GH +F + W + + + SGS DG++
Sbjct: 509 NKDMIATGCEDTNVRVYYVATSSDQPLKVFSGHTAKVFHVKWSPLREGILCSGSDDGTVR 568
Query: 209 LWEVTDD 215
+W+ T D
Sbjct: 569 IWDYTQD 575
>gi|31317311 WD repeat domain 17 isoform 1 [Homo sapiens]
Length = 1322
Score = 35.8 bits (81), Expect = 0.082
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 151 SRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAW--ISDTMAVSGSRDGSMG 208
++ ++ATG ++ N Y + D GH +F + W + + + SGS DG++
Sbjct: 533 NKDMIATGCEDTNVRVYYVATSSDQPLKVFSGHTAKVFHVKWSPLREGILCSGSDDGTVR 592
Query: 209 LWEVTDD 215
+W+ T D
Sbjct: 593 IWDYTQD 599
>gi|17402902 guanine nucleotide binding protein beta-subunit-like
polypeptide [Homo sapiens]
Length = 327
Score = 34.3 bits (77), Expect = 0.24
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 142 GIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSG 201
GI + + P R +LAT G + + + ++ T+ P+ V H + +A+ +D + +G
Sbjct: 255 GIAEVTIRPDRKILATAGWD-HRIRVFHWRTMQPLAVLAF-HSAAVQCVAFTADGLLAAG 312
Query: 202 SRDGSMGLWEV 212
S+D + LW +
Sbjct: 313 SKDQRISLWSL 323
>gi|41281564 WD repeat domain 37 [Homo sapiens]
Length = 494
Score = 34.3 bits (77), Expect = 0.24
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 92 VFASQWL-NHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIELNP 150
V AS WL +Q V + T + DV+TS++ D+E C H +
Sbjct: 284 VIASDWLVGGKQAVTASWDRTANLYDVETSELVHSLTGHDQE-----LTHCCTHPTQ--- 335
Query: 151 SRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMAVSGSRDGSMGLW 210
R ++ + D L +R P++ V V GH D + S + VSGS D ++ +W
Sbjct: 336 -RLVVTSSRDTTFRLWDFRDPSIHSVNVFQ-GHTDTVTSAVFTVGDNVVSGSDDRTVKVW 393
Query: 211 EV 212
++
Sbjct: 394 DL 395
>gi|207029439 retinoblastoma binding protein 4 isoform c [Homo
sapiens]
Length = 390
Score = 33.9 bits (76), Expect = 0.31
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWI--SDTMAVS 200
++ + NP + G ++A++ L L + HKD IF + W ++T+ S
Sbjct: 241 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 300
Query: 201 GSRDGSMGLWEVT 213
D + +W+++
Sbjct: 301 SGTDRRLNVWDLS 313
>gi|207029415 retinoblastoma binding protein 4 isoform b [Homo
sapiens]
Length = 424
Score = 33.9 bits (76), Expect = 0.31
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWI--SDTMAVS 200
++ + NP + G ++A++ L L + HKD IF + W ++T+ S
Sbjct: 275 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 334
Query: 201 GSRDGSMGLWEVT 213
D + +W+++
Sbjct: 335 SGTDRRLNVWDLS 347
>gi|5032027 retinoblastoma binding protein 4 isoform a [Homo
sapiens]
Length = 425
Score = 33.9 bits (76), Expect = 0.31
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWI--SDTMAVS 200
++ + NP + G ++A++ L L + HKD IF + W ++T+ S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 201 GSRDGSMGLWEVT 213
D + +W+++
Sbjct: 336 SGTDRRLNVWDLS 348
>gi|16554629 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.31
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 182 GHKDWIFSIAWISDT-MAVSGSRDGSMGLWEVTDDVLTKSDARHN--------------- 225
GHK I +AW SD+ + VS S D ++ +W+V+ K+ H+
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 226 -----VSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLW 279
V ++ T K LK +P V A+ FN + + S DG +W
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 30.8 bits (68), Expect = 2.6
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 24/151 (15%)
Query: 182 GHKDWIFSIAWISDT-MAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVY-------- 232
GH +++F + + + VSGS D S+ +W+V K+ H+ V+
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Query: 233 --------AHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENT 284
I A K + DN V + F+ K + A +LD LW + +
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYS 244
Query: 285 LSKLLSTKLPYCRENVCL-----AYGSEWSV 310
K L T + E C+ G +W V
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
>gi|16554627 WD repeat domain 5 [Homo sapiens]
Length = 334
Score = 33.9 bits (76), Expect = 0.31
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 182 GHKDWIFSIAWISDT-MAVSGSRDGSMGLWEVTDDVLTKSDARHN--------------- 225
GHK I +AW SD+ + VS S D ++ +W+V+ K+ H+
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 226 -----VSRVPVYAHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLW 279
V ++ T K LK +P V A+ FN + + S DG +W
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSD-----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Score = 30.8 bits (68), Expect = 2.6
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 24/151 (15%)
Query: 182 GHKDWIFSIAWISDT-MAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVY-------- 232
GH +++F + + + VSGS D S+ +W+V K+ H+ V+
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Query: 233 --------AHITHKALKDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENT 284
I A K + DN V + F+ K + A +LD LW + +
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW--DYS 244
Query: 285 LSKLLSTKLPYCRENVCL-----AYGSEWSV 310
K L T + E C+ G +W V
Sbjct: 245 KGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275
>gi|20357529 guanine nucleotide-binding protein, beta-2 subunit
[Homo sapiens]
Length = 340
Score = 33.5 bits (75), Expect = 0.41
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 79 LKEREFHLGTLNKVFASQW-LNHRQVVCGTKCNTLFVVD-VQTSQITKIPILKDREPGGV 136
++ R G L K++A W + R +V ++ L + D T+++ IP+
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--------- 95
Query: 137 TQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDP-VCVGDD--GHKDWIFSIAWI 193
+ + PS +A GG + N +IY L T + V V + GH ++ ++
Sbjct: 96 --RSSWVMTCAYAPSGNFVACGGLD-NICSIYSLKTREGNVRVSRELPGHTGYLSCCRFL 152
Query: 194 SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHN 225
D ++ S D + LW++ T A H+
Sbjct: 153 DDNQIITSSGDTTCALWDIETGQQTVGFAGHS 184
Score = 30.4 bits (67), Expect = 3.4
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 9/143 (6%)
Query: 88 TLNKVFASQWLNHRQVVCGTKCNTLFVVDVQTSQITKIPILKDREPGGVTQQGCGIHAIE 147
T NKV A + + C + FV I I LK RE + H
Sbjct: 86 TTNKVHAIPLRSSWVMTCAYAPSGNFVACGGLDNICSIYSLKTREGNVRVSRELPGHTGY 145
Query: 148 LNPSRTL-----LATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWISDTMA-VSG 201
L+ R L + + GD + A++ + T VG GH + S++ D VSG
Sbjct: 146 LSCCRFLDDNQIITSSGDT--TCALWDIETGQQT-VGFAGHSGDVMSLSLAPDGRTFVSG 202
Query: 202 SRDGSMGLWEVTDDVLTKSDARH 224
+ D S+ LW+V D + ++ H
Sbjct: 203 ACDASIKLWDVRDSMCRQTFIGH 225
>gi|11321585 guanine nucleotide-binding protein, beta-1 subunit
[Homo sapiens]
Length = 340
Score = 32.7 bits (73), Expect = 0.69
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 17/151 (11%)
Query: 79 LKEREFHLGTLNKVFASQW-LNHRQVVCGTKCNTLFVVD-VQTSQITKIPILKDREPGGV 136
++ R G L K++A W + R +V ++ L + D T+++ IP+
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL--------- 95
Query: 137 TQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDP-VCVGDD--GHKDWIFSIAWI 193
+ + PS +A GG + N +IY L T + V V + GH ++ ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 194 SDTMAVSGSRDGSMGLWEVTDDVLTKSDARH 224
D V+ S D + LW++ T + H
Sbjct: 153 DDNQIVTSSGDTTCALWDIETGQQTTTFTGH 183
>gi|4506439 retinoblastoma binding protein 7 [Homo sapiens]
Length = 425
Score = 32.7 bits (73), Expect = 0.69
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 143 IHAIELNPSRTLLATGGDNPNSLAIYRLPTLDPVCVGDDGHKDWIFSIAWI--SDTMAVS 200
++ + NP + G ++A++ L L + HKD IF + W ++T+ S
Sbjct: 275 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 334
Query: 201 GSRDGSMGLWEVT 213
D + +W+++
Sbjct: 335 SGTDRRLNVWDLS 347
>gi|62234461 Notchless gene homolog isoform a [Homo sapiens]
Length = 485
Score = 32.7 bits (73), Expect = 0.69
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 145 AIELNPSRTLLATGGDNPNSLAIYRLPTLDP--VCVGDDGHKDWIFSIAWISD-TMAVSG 201
++ +P+ LA+G + ++ + L T P C GH+ W+ SI+W D SG
Sbjct: 119 SVAFSPTGKYLASGSGD-TTVRFWDLSTETPHFTC---KGHRHWVLSISWSPDGRKLASG 174
Query: 202 SRDGSMGLWE 211
++G + LW+
Sbjct: 175 CKNGQILLWD 184
Score = 31.2 bits (69), Expect = 2.0
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 182 GHKDWIFSIAWISDT-MAVSGSRDGSMGLWEV 212
GH ++ IAW +D+ + VSGS D ++ +W+V
Sbjct: 412 GHVAAVYQIAWSADSRLLVSGSSDSTLKVWDV 443
>gi|11055998 guanine nucleotide-binding protein, beta-4 subunit
[Homo sapiens]
Length = 340
Score = 32.3 bits (72), Expect = 0.91
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 79 LKEREFHLGTLNKVFASQW-LNHRQVVCGTKCNTLFVVD-VQTSQITKIPILKDREPGGV 136
++ R G L K++A W + R +V ++ L + D T+++ IP+
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGYDSRLLVSASQDGKLIIWDSYTTNKMHAIPL--------- 95
Query: 137 TQQGCGIHAIELNPSRTLLATGGDNPNSLAIYRLPTLDP-VCVGDD--GHKDWIFSIAWI 193
+ + PS +A GG + N +IY L T + V V + GH ++ ++
Sbjct: 96 --RSSWVMTCAYAPSGNYVACGGLD-NICSIYNLKTREGNVRVSRELPGHTGYLSCCRFL 152
Query: 194 SDTMAVSGSRDGSMGLWEVTDDVLTKSDARHN 225
D+ V+ S D + LW++ T + H+
Sbjct: 153 DDSQIVTSSGDTTCALWDIETAQQTTTFTGHS 184
>gi|5174447 guanine nucleotide binding protein (G protein), beta
polypeptide 2-like 1 [Homo sapiens]
Length = 317
Score = 32.3 bits (72), Expect = 0.91
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 39/128 (30%)
Query: 182 GHKDWIFSIAWISD-TMAVSGSRDGSMGLWEVTDDVLTKSDARHNVSRVPVYAHITHKAL 240
GH ++ + SD A+SGS DG++ LW++T T+ H
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT--------------- 105
Query: 241 KDIPKEDTNPDNCKVRALAFNNKNKELGAVSLDGYFHLWKAENTLSKLLSTKLPYCRENV 300
KD V ++AF++ N+++ + S D LW NTL C+ V
Sbjct: 106 KD------------VLSVAFSSDNRQIVSGSRDKTIKLW---NTLG--------VCKYTV 142
Query: 301 CLAYGSEW 308
SEW
Sbjct: 143 QDESHSEW 150
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,962,664
Number of Sequences: 37866
Number of extensions: 858183
Number of successful extensions: 2109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2055
Number of HSP's gapped (non-prelim): 88
length of query: 453
length of database: 18,247,518
effective HSP length: 106
effective length of query: 347
effective length of database: 14,233,722
effective search space: 4939101534
effective search space used: 4939101534
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.