Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 222144317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|222144317 Ras-related protein RAB34 isoform 4 [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|222144317 Ras-related protein RAB34 isoform 4 [Homo sapiens] 506 e-144
gi|222144313 Ras-related protein RAB34 isoform 2 [Homo sapiens] 506 e-144
gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens] 499 e-141
gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens] 499 e-141
gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens] 360 e-100
gi|31795535 RAB36, member RAS oncogene family [Homo sapiens] 279 1e-75
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 120 1e-27
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 117 9e-27
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 114 6e-26
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 114 6e-26
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 114 6e-26
gi|19923483 GTPase Rab14 [Homo sapiens] 114 1e-25
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 111 5e-25
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 110 2e-24
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 108 3e-24
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 107 8e-24
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 107 1e-23
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 106 2e-23
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 102 3e-22
gi|38371739 RAB15, member RAS onocogene family [Homo sapiens] 102 3e-22
gi|50234889 RAB43 protein [Homo sapiens] 102 4e-22
gi|16933567 mel transforming oncogene [Homo sapiens] 101 5e-22
gi|34485714 Ras-related protein Rab-23 [Homo sapiens] 100 9e-22
gi|34485716 Ras-related protein Rab-23 [Homo sapiens] 100 9e-22
gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo s... 100 1e-21
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 100 2e-21
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 99 5e-21
gi|4758996 Ras-related protein Rab-33A [Homo sapiens] 97 1e-20
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 97 2e-20
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 96 3e-20
>gi|222144317 Ras-related protein RAB34 isoform 4 [Homo sapiens]
Length = 251
Score = 506 bits (1303), Expect = e-144
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
Sbjct: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
Query: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
Sbjct: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
Query: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ 180
YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
Sbjct: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ 180
Query: 181 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL 240
EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
Sbjct: 181 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL 240
Query: 241 TASKKKPTCCP 251
TASKKKPTCCP
Sbjct: 241 TASKKKPTCCP 251
>gi|222144313 Ras-related protein RAB34 isoform 2 [Homo sapiens]
Length = 308
Score = 506 bits (1303), Expect = e-144
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
Sbjct: 58 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 117
Query: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
Sbjct: 118 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 177
Query: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ 180
YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ
Sbjct: 178 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEKDALQVAQ 237
Query: 181 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL 240
EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL
Sbjct: 238 EMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRINSDDSNLYL 297
Query: 241 TASKKKPTCCP 251
TASKKKPTCCP
Sbjct: 298 TASKKKPTCCP 308
>gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]
Length = 316
Score = 499 bits (1284), Expect = e-141
Identities = 251/259 (96%), Positives = 251/259 (96%), Gaps = 8/259 (3%)
Query: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
Sbjct: 58 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 117
Query: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
Sbjct: 118 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 177
Query: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME 172
YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL TPAQYALME
Sbjct: 178 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME 237
Query: 173 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN 232
KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
Sbjct: 238 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN 297
Query: 233 SDDSNLYLTASKKKPTCCP 251
SDDSNLYLTASKKKPTCCP
Sbjct: 298 SDDSNLYLTASKKKPTCCP 316
>gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]
Length = 259
Score = 499 bits (1284), Expect = e-141
Identities = 251/259 (96%), Positives = 251/259 (96%), Gaps = 8/259 (3%)
Query: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD
Sbjct: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGD 60
Query: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST
Sbjct: 61 LSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAST 120
Query: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALME 172
YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL TPAQYALME
Sbjct: 121 YYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALME 180
Query: 173 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN 232
KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN
Sbjct: 181 KDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVVRIN 240
Query: 233 SDDSNLYLTASKKKPTCCP 251
SDDSNLYLTASKKKPTCCP
Sbjct: 241 SDDSNLYLTASKKKPTCCP 259
>gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens]
Length = 268
Score = 360 bits (924), Expect = e-100
Identities = 183/192 (95%), Positives = 183/192 (95%), Gaps = 9/192 (4%)
Query: 1 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVG-FKISKVIVVG 59
MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVG FKISKVIVVG
Sbjct: 58 MNILAPVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGRFKISKVIVVG 117
Query: 60 DLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAS 119
DLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAS
Sbjct: 118 DLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIAS 177
Query: 120 TYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL--------TPAQYALM 171
TYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL TPAQYALM
Sbjct: 178 TYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSKKDLSTPAQYALM 237
Query: 172 EKDALQVAQEMK 183
EKDALQVAQEMK
Sbjct: 238 EKDALQVAQEMK 249
>gi|31795535 RAB36, member RAS oncogene family [Homo sapiens]
Length = 333
Score = 279 bits (714), Expect = 1e-75
Identities = 142/260 (54%), Positives = 184/260 (70%), Gaps = 18/260 (6%)
Query: 6 PVRRDRVLAELPQCLRKEAALHGHKDFHPRVTCACQEHRTGTVGFKISKVIVVGDLSVGK 65
PV RDRV+A P+ EA L + FH +V+ ACQ TGTVG K+SKV+VVGDL VGK
Sbjct: 77 PVSRDRVIASFPKWYTPEACLQLREHFHGQVSAACQRRNTGTVGLKLSKVVVVGDLYVGK 136
Query: 66 TCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQERFKCIASTYYRGA 125
T LI+RFCK+ FD++YKATIGVDFE+ERFE+ GIP+SLQ+WDTAGQE+FKCIAS YYRGA
Sbjct: 137 TSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGA 196
Query: 126 QAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALM--------EKDALQ 177
Q II F+L DV +LEHT+QWL DAL+EN+ S +FL + L+ E DA+
Sbjct: 197 QVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVH 256
Query: 178 VAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRI----GDVVRINS 233
+A+EM+AEYW+VS+ TGENV+ FF RVAAL FE +VL +LE+ + R+ GD++++
Sbjct: 257 LAREMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLERQSSARLQVGNGDLIQMEG 316
Query: 234 DDSNLYLTASKKKPT---CC 250
T K+P+ CC
Sbjct: 317 SPPE---TQESKRPSSLGCC 333
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 120 bits (301), Expect = 1e-27
Identities = 74/203 (36%), Positives = 111/203 (54%), Gaps = 18/203 (8%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTCLI RF +D F+ Y +TIG+DF++ ++ G LQ+WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL------TPAQ 167
FK I + YYRGA II+V+++ D S E+ + W+ ++KEN + V L A+
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWM-KSIKENASAGVERLLLGNKCDMEAK 128
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ ++ A ++A+E ++ S+ + NV E F +A L KSG RR G+
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR--------DILLKSGGRRSGN 180
Query: 228 VVRINSDDSNLYLTASKKKPTCC 250
N S T KK C
Sbjct: 181 G---NKPPSTDLKTCDKKNTNKC 200
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 117 bits (293), Expect = 9e-27
Identities = 68/201 (33%), Positives = 106/201 (52%), Gaps = 13/201 (6%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGK+ L+ RF +TF +Y TIGVDF++ E+ G LQ+WDTAGQER
Sbjct: 10 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLT----PAQYA 169
F+ I STYYRG +I+V+++ S + K+WL + + D +L P +
Sbjct: 70 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKV 129
Query: 170 LMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGDVV 229
+ +DA + A +M + + S+ NV E F + L A L K ++ DVV
Sbjct: 130 VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK-KDNLAKQQQQQQNDVV 188
Query: 230 RINSDDSNLYLTASKKKPTCC 250
++ + SK+K CC
Sbjct: 189 KLTKN--------SKRKKRCC 201
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 114 bits (286), Expect = 6e-26
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 15/180 (8%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTCLI RF +D F+ Y +TIG+DF++ ++ G LQ+WDTAGQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL------TPAQ 167
FK I + YYRGA II+ +++ D S E+ + W+ ++ EN + V L A+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWM-KSIMENASAGVEHLLLGNKCDMEAK 252
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ ++ A ++A+E ++ S+ + NV E F +A L KSG RR G+
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR--------DILLKSGGRRSGN 304
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 114 bits (286), Expect = 6e-26
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 15/180 (8%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTCLI RF +D F+ Y +TIG+DF++ ++ G LQ+WDTAGQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL------TPAQ 167
FK I + YYRGA II+ +++ D S E+ + W+ ++ EN + V L A+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWM-KSIMENASAGVEHLLLGNKCDMEAK 252
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ ++ A ++A+E ++ S+ + NV E F +A L KSG RR G+
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR--------DILLKSGGRRSGN 304
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 114 bits (286), Expect = 6e-26
Identities = 66/180 (36%), Positives = 103/180 (57%), Gaps = 15/180 (8%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTCLI RF +D F+ Y +TIG+DF++ ++ G LQ+WDTAGQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL------TPAQ 167
FK I + YYRGA II+ +++ D S E+ + W+ ++ EN + V L A+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWM-KSIMENASAGVEHLLLGNKCDMEAK 252
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ ++ A ++A+E ++ S+ + NV E F +A L KSG RR G+
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLAR--------DILLKSGGRRSGN 304
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 114 bits (284), Expect = 1e-25
Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Query: 52 ISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQ 111
I K I++GD+ VGK+CL+++F + F + TIGV+F EV G LQ+WDTAGQ
Sbjct: 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 70
Query: 112 ERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL-----TPA 166
ERF+ + +YYRGA ++V+++ ++ H WL DA +P++V++ + A
Sbjct: 71 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 130
Query: 167 QYALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFE 210
Q + ++A Q A+E + S+ TGENV + F A ++
Sbjct: 131 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 174
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 111 bits (278), Expect = 5e-25
Identities = 70/206 (33%), Positives = 108/206 (52%), Gaps = 23/206 (11%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGK+CL+ RF DT+ ++Y +TIGVDF++ E+ G LQ+WDTAGQER
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ I S+YYRGA II+V+++ D S + KQWL + + +V L + L K
Sbjct: 70 FRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQE-IDRYASENVNKLLVGNKSDLTTK 128
Query: 174 ------DALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
A + A + + S+ NV + F +A AE++K R+G
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMA---------AEIKK----RMGP 175
Query: 228 VVRINSDDSNLYLTASKKKPT---CC 250
+ NL + ++ KP CC
Sbjct: 176 GAASGGERPNLKIDSTPVKPAGGGCC 201
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 110 bits (274), Expect = 2e-24
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 7/159 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGK+CL+ RF DT+ ++Y +TIGVDF++ E+ G LQ+WDTAGQER
Sbjct: 13 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 72
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ I S+YYRGA II+V+++ D S + KQWL + + +V L + L K
Sbjct: 73 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENVNKLLVGNKCDLTTK 131
Query: 174 ------DALQVAQEMKAEYWAVSSLTGENVREFFFRVAA 206
A + A + + S+ NV + F +AA
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAA 170
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 108 bits (271), Expect = 3e-24
Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 7/159 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++ +G+ SVGKT LI RF D+FD Y+ATIG+DF + + LQLWDTAGQER
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 74
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ + +Y R + A ++V+++ +V S + T +W+ D E S V++ L + L +K
Sbjct: 75 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADK 133
Query: 174 DALQV------AQEMKAEYWAVSSLTGENVREFFFRVAA 206
+ + A+E+ + S+ G NV++ F RVAA
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 107 bits (268), Expect = 8e-24
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++ +G+ SVGKT LI RF D+FD Y+ATIG+DF + + LQLWDTAGQER
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ + +Y R + ++V+++ ++ S + T +W+ D E S V++ L + L +K
Sbjct: 75 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERG-SDVIIMLVGNKTDLADK 133
Query: 174 ------DALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSG 221
+ Q A+E+ + S+ TG NV++ F RVA+ + E K G
Sbjct: 134 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 107 bits (266), Expect = 1e-23
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++ +G+ SVGKT LI RF D+FD Y+ATIG+DF + + LQLWDTAGQER
Sbjct: 15 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 74
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ + +Y R + ++V+++ +V S + T +W+ D E S V++ L + L +K
Sbjct: 75 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADK 133
Query: 174 DALQV------AQEMKAEYWAVSSLTGENVREFFFRVAA 206
+ + A+E+ + S+ G NV++ F RVAA
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 106 bits (264), Expect = 2e-23
Identities = 54/158 (34%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTCL+ RF +D F+ + +TIG+DF++ E+ G LQ+WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ I + YYRGA I++V+++ + S ++ K W+ + ++E+ S V + + + +K
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRN-IEEHASSDVERMILGNKCDMNDK 128
Query: 174 DAL------QVAQEMKAEYWAVSSLTGENVREFFFRVA 205
+ ++A + ++ S+ + NV E FF +A
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLA 166
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 102 bits (254), Expect = 3e-22
Identities = 53/158 (33%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTC++ RF D F+ + +TIG+DF+++ E+ G LQ+WDTAGQER
Sbjct: 11 KLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQER 70
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F I ++YYRGA I++V+++ + S E+ +WL + + E+ V L + + +K
Sbjct: 71 FHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRN-IDEHANEDVERMLLGNKCDMDDK 129
Query: 174 DAL------QVAQEMKAEYWAVSSLTGENVREFFFRVA 205
+ Q+A+E ++ S+ N+ + F +A
Sbjct: 130 RVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLA 167
>gi|38371739 RAB15, member RAS onocogene family [Homo sapiens]
Length = 208
Score = 102 bits (254), Expect = 3e-22
Identities = 45/106 (42%), Positives = 73/106 (68%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
+++++GD VGKTCL+ RF + F ++ +TIGVDF+M+ EV GI +Q+WDTAGQER
Sbjct: 10 RLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSV 159
++ I YYR AQ I +V++++ S +H +W++D + D +S+
Sbjct: 70 YQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEVGDATSL 115
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 102 bits (253), Expect = 4e-22
Identities = 58/158 (36%), Positives = 84/158 (53%), Gaps = 6/158 (3%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K+++VGD SVGKTC++ RF F + +TIGVDF M+ E+ G LQ+WDTAGQER
Sbjct: 20 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQER 79
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSV-LLFLTPAQYALME 172
F+ I +YYR A I+ +++ +S W+ D K + V LL + + +
Sbjct: 80 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELR 139
Query: 173 KDALQVAQEMKAEY-----WAVSSLTGENVREFFFRVA 205
+ +L AQ + Y S+ NV E F RVA
Sbjct: 140 EVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 177
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 101 bits (252), Expect = 5e-22
Identities = 56/187 (29%), Positives = 106/187 (56%), Gaps = 8/187 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++GD VGKTC++ RF +D F+ + +TIG+DF++ E+ G LQ+WDTAGQER
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ I + YYRGA I++V+++ + S ++ + W+ + ++E+ + V + + + +K
Sbjct: 70 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADVEKMILGNKCDVNDK 128
Query: 174 DAL------QVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ ++A + ++ S+ NV FF +A +A + +LE + +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR-DIKAKMDKKLEGNSPQGSNQ 187
Query: 228 VVRINSD 234
V+I D
Sbjct: 188 GVKITPD 194
>gi|34485714 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 100 bits (250), Expect = 9e-22
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++VVG+ +VGK+ +I R+CK F K+YK TIGVDF + +V L LWDTAGQE
Sbjct: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQY----A 169
F I YYRGAQA ++VF+ D S E W + E +L
Sbjct: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSC 130
Query: 170 LMEKDALQVAQEMKAEYWAVSSLTGENVREFF 201
+ ++A +A+ +K ++ S NV E F
Sbjct: 131 IKNEEAEALAKRLKLRFYRTSVKEDLNVNEVF 162
>gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 100 bits (250), Expect = 9e-22
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 4/152 (2%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++VVG+ +VGK+ +I R+CK F K+YK TIGVDF + +V L LWDTAGQE
Sbjct: 11 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 70
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQY----A 169
F I YYRGAQA ++VF+ D S E W + E +L
Sbjct: 71 FDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSC 130
Query: 170 LMEKDALQVAQEMKAEYWAVSSLTGENVREFF 201
+ ++A +A+ +K ++ S NV E F
Sbjct: 131 IKNEEAEALAKRLKLRFYRTSVKEDLNVNEVF 162
>gi|222418791 EF-hand calcium binding domain 4B isoform a [Homo
sapiens]
Length = 731
Score = 100 bits (249), Expect = 1e-21
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 23/216 (10%)
Query: 40 CQEHRTGTVGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGI 99
C+E + + ++ K++ VG+ +VGKT + RFC+D F AT+G+D+ ++ V
Sbjct: 533 CKEESSPSAPDRLFKIVFVGNSAVGKTSFLRRFCEDRFSPGMAATVGIDYRVKTLNVDNS 592
Query: 100 PFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSV 159
+LQLWDTAGQER++CI ++R A +I++++L D S ++WL+ +
Sbjct: 593 QVALQLWDTAGQERYRCITQQFFRKADGVIVMYDLTDKQSFLSVRRWLSSVEEAVGDRVP 652
Query: 160 LLFLTPAQYALMEKD-----ALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVL 214
+L L E++ Q+A E ++ S+ +G N +E +L A L
Sbjct: 653 VLLLGNKLDNEKEREVPRGLGEQLATENNLIFYECSAYSGHNTKE------SLLHLARFL 706
Query: 215 AELEKSGARRIGDVVRINSDDSNLYLTASKKKPTCC 250
E E D VR + + + KK +CC
Sbjct: 707 KEQE--------DTVR----EDTIQVGHPAKKKSCC 730
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 99.8 bits (247), Expect = 2e-21
Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K +V+G GK+CL+++F ++ F ++ TIGV+F V G LQ+WDTAGQER
Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 69
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLF------LTPAQ 167
F+ + +YYRGA ++V+++ + WL DA P+ V++ L P +
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPER 129
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVA 205
+A + AQE + + S+LTGENV E F + A
Sbjct: 130 EVTF-LEASRFAQENELMFLETSALTGENVEEAFLKCA 166
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 98.6 bits (244), Expect = 5e-21
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 19/203 (9%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTF-DKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQE 112
KV+++GD VGKTC + +F F + AT+G+DF + V G+ LQ+WDTAGQE
Sbjct: 31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQE 90
Query: 113 RFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFL-----TPAQ 167
RF+ + YYR AQA+++++++ + +S ++ + WL + + V++ L ++
Sbjct: 91 RFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSE 150
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFFFRVAALTFEANVLAELEKSGARRIGD 227
+ +D +A+E + S+ TG NV F +A K R G
Sbjct: 151 RVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIA-------------KELKYRAGH 197
Query: 228 VVRINSDDSNLYLTASKKKPTCC 250
S Y+ + KK+ +CC
Sbjct: 198 QADEPSFQIRDYVESQKKRSSCC 220
>gi|4758996 Ras-related protein Rab-33A [Homo sapiens]
Length = 237
Score = 97.1 bits (240), Expect = 1e-20
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 1/103 (0%)
Query: 48 VGFKISKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWD 107
V +I K+IV+GD +VGKTCL RFC TF +ATIGVDF + E+ G +Q+WD
Sbjct: 32 VQIRIFKIIVIGDSNVGKTCLTFRFCGGTFPDKTEATIGVDFREKTVEIEGEKIKVQVWD 91
Query: 108 TAGQERF-KCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLAD 149
TAGQERF K + YYR A++ V+++ + S + K W+ +
Sbjct: 92 TAGQERFRKSMVEHYYRNVHAVVFVYDVTKMTSFTNLKMWIQE 134
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 96.7 bits (239), Expect = 2e-20
Identities = 54/160 (33%), Positives = 88/160 (55%), Gaps = 11/160 (6%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
K++++G+ VGKTCL+ RF + F ATIGVDF ++ E+ G LQ+WDTAGQER
Sbjct: 11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 70
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQYALMEK 173
F+ I +YYR A A+I+ +++ S +WL + +++ + V+ L + L E+
Sbjct: 71 FRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAER 129
Query: 174 DALQVAQEMKAE--------YWAVSSLTGENVREFFFRVA 205
+V+Q+ E Y S+ +NV + F +A
Sbjct: 130 --REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 167
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 95.9 bits (237), Expect = 3e-20
Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 7/154 (4%)
Query: 54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVLGIPFSLQLWDTAGQER 113
KV+++GD VGK+ L++RF ++ F+ K+TIGV+F +V G Q+WDTAGQER
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 72
Query: 114 FKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLTPAQ------ 167
++ I S YYRGA ++V+++ + E+ ++WL + L+++ S++++ L +
Sbjct: 73 YRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKE-LRDHADSNIVIMLVGNKSDLRHL 131
Query: 168 YALMEKDALQVAQEMKAEYWAVSSLTGENVREFF 201
A+ +A A++ + S+L NV E F
Sbjct: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,517,425
Number of Sequences: 37866
Number of extensions: 317949
Number of successful extensions: 1070
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 230
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.