Guide to the Human Genome
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Name: CTSL1 Sequence: fasta or formatted (333aa) NCBI GI: 22202619
Description:

cathepsin L1 preproprotein

Referenced in:

Cysteine Proteases

Other entries for this name:
alt mRNA [333aa] cathepsin L1 preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         25           2
 C cysteine            2.4          8           1
 D aspartate           4.5         15           1
 E glutamate           8.7         29           2
 F phenylalanine       4.8         16           1
 G glycine             9.6         32           2
 H histidine           2.1          7           1
 I isoleucine          2.7          9           1
 K lysine              6.3         21           1
 L leucine             5.4         18           1
 M methionine          4.5         15           1
 N asparagine          5.7         19           2
 P proline             3.6         12           1
 Q glutamine           3.9         13           1
 R arginine            3.9         13           2
 S serine              6.9         23           2
 T threonine           4.2         14           1
 V valine              5.7         19           2
 W tryptophan          2.7          9           1
 Y tyrosine            4.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin L1 preproprotein 
CTSL1                 1.000   cathepsin L1 preproprotein 
CTSL2                 0.776   cathepsin L2 preproprotein 
CTSK                  0.454   cathepsin K preproprotein 
CTSS                  0.439   cathepsin S preproprotein 
CTSH                  0.300   cathepsin H isoform a preproprotein 
CTSH                  0.295   cathepsin H isoform b precursor 
CTSF                  0.234   cathepsin F 
CTSO                  0.163   cathepsin O preproprotein 
CTSW                  0.150   cathepsin W preproprotein 
LOC100133189          0.149   PREDICTED: similar to Putative cathepsin L-like pro...
CTSC                  0.135   cathepsin C isoform a preproprotein 
CTSB                  0.110   cathepsin B preproprotein 
CTSB                  0.110   cathepsin B preproprotein 
CTSB                  0.110   cathepsin B preproprotein 
CTSB                  0.110   cathepsin B preproprotein 
CTSB                  0.110   cathepsin B preproprotein 
LOC644021             0.102   PREDICTED: similar to Cathepsin L1 
CTSZ                  0.097   cathepsin Z preproprotein 
TINAGL1               0.082   tubulointerstitial nephritis antigen-like 1 
TINAG                 0.078   tubulointerstitial nephritis antigen 
LOC100291914          0.007   PREDICTED: hypothetical protein XP_002345991 
LOC100290611          0.007   PREDICTED: hypothetical protein XP_002346841 
LOC100287467          0.007   PREDICTED: hypothetical protein XP_002342727 
CAPN11                0.007   calpain 11 
PITPNC1               0.007   phosphatidylinositol transfer protein, cytoplasmic 1...
PITPNC1               0.007   phosphatidylinositol transfer protein, cytoplasmic 1...
BLMH                  0.007   bleomycin hydrolase 
SPTA1                 0.006   spectrin, alpha, erythrocytic 1 
ESD                   0.004   esterase D/formylglutathione hydrolase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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