Guide to the Human Genome
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Name: CTSF Sequence: fasta or formatted (484aa) NCBI GI: 6042196
Description:

cathepsin F

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         42           2
 C cysteine            2.3         11           1
 D aspartate           4.5         22           2
 E glutamate           5.4         26           3
 F phenylalanine       3.5         17           1
 G glycine             8.3         40           2
 H histidine           1.2          6           1
 I isoleucine          2.7         13           1
 K lysine              5.4         26           2
 L leucine            10.7         52           2
 M methionine          2.7         13           1
 N asparagine          4.8         23           2
 P proline             5.6         27           2
 Q glutamine           4.3         21           1
 R arginine            5.6         27           2
 S serine              8.5         41           2
 T threonine           4.1         20           1
 V valine              6.4         31           2
 W tryptophan          2.5         12           1
 Y tyrosine            2.9         14           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin F 
CTSW                  0.221   cathepsin W preproprotein 
CTSL1                 0.165   cathepsin L1 preproprotein 
CTSL1                 0.165   cathepsin L1 preproprotein 
CTSH                  0.165   cathepsin H isoform b precursor 
CTSH                  0.165   cathepsin H isoform a preproprotein 
CTSL2                 0.160   cathepsin L2 preproprotein 
CTSK                  0.146   cathepsin K preproprotein 
CTSO                  0.138   cathepsin O preproprotein 
CTSS                  0.136   cathepsin S preproprotein 
CTSC                  0.099   cathepsin C isoform a preproprotein 
CTSB                  0.066   cathepsin B preproprotein 
CTSB                  0.066   cathepsin B preproprotein 
CTSB                  0.066   cathepsin B preproprotein 
CTSB                  0.066   cathepsin B preproprotein 
CTSB                  0.066   cathepsin B preproprotein 
CTSZ                  0.042   cathepsin Z preproprotein 
TINAGL1               0.035   tubulointerstitial nephritis antigen-like 1 
TINAG                 0.030   tubulointerstitial nephritis antigen 
LOC100133189          0.016   PREDICTED: similar to Putative cathepsin L-like pro...
PCDHB14               0.010   protocadherin beta 14 precursor 
BLMH                  0.007   bleomycin hydrolase 
TTC3                  0.007   tetratricopeptide repeat domain 3 
TTC3                  0.007   tetratricopeptide repeat domain 3 
LOC643153             0.007   PREDICTED: hypothetical protein 
LOC643153             0.007   PREDICTED: hypothetical protein 
LOC643153             0.007   PREDICTED: hypothetical protein 
PLD3                  0.006   phospholipase D3 
PLD3                  0.006   phospholipase D3 
FAM131A               0.005   hypothetical protein LOC131408 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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