Guide to the Human Genome
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Name: CTSC Sequence: fasta or formatted (463aa) NCBI GI: 189083844
Description:

cathepsin C isoform a preproprotein

Referenced in:

Cysteine Proteases

Other entries for this name:
alt prot [141aa] cathepsin C isoform c precursor
alt prot [137aa] cathepsin C isoform b precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         31           2
 C cysteine            3.0         14           1
 D aspartate           4.5         21           2
 E glutamate           5.2         24           2
 F phenylalanine       4.3         20           2
 G glycine             9.3         43           2
 H histidine           3.0         14           2
 I isoleucine          4.3         20           2
 K lysine              5.4         25           2
 L leucine             8.0         37           5
 M methionine          2.4         11           1
 N asparagine          5.0         23           2
 P proline             4.1         19           1
 Q glutamine           3.2         15           2
 R arginine            3.7         17           2
 S serine              6.7         31           2
 T threonine           6.3         29           2
 V valine              6.5         30           3
 W tryptophan          2.2         10           1
 Y tyrosine            6.3         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin C isoform a preproprotein 
CTSC                  0.206   cathepsin C isoform c precursor 
CTSC                  0.206   cathepsin C isoform b precursor 
CTSH                  0.129   cathepsin H isoform b precursor 
CTSH                  0.129   cathepsin H isoform a preproprotein 
CTSB                  0.111   cathepsin B preproprotein 
CTSB                  0.111   cathepsin B preproprotein 
CTSB                  0.111   cathepsin B preproprotein 
CTSB                  0.111   cathepsin B preproprotein 
CTSB                  0.111   cathepsin B preproprotein 
TINAG                 0.107   tubulointerstitial nephritis antigen 
TINAGL1               0.105   tubulointerstitial nephritis antigen-like 1 
CTSL2                 0.104   cathepsin L2 preproprotein 
CTSF                  0.101   cathepsin F 
CTSZ                  0.098   cathepsin Z preproprotein 
CTSK                  0.097   cathepsin K preproprotein 
CTSL1                 0.097   cathepsin L1 preproprotein 
CTSL1                 0.097   cathepsin L1 preproprotein 
CTSS                  0.095   cathepsin S preproprotein 
CTSW                  0.086   cathepsin W preproprotein 
CTSO                  0.075   cathepsin O preproprotein 
B4GALNT4              0.004   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
POR                   0.004   cytochrome P450 reductase 
EFCAB6                0.004   CAP-binding protein complex interacting protein 1 is...
EFCAB6                0.004   CAP-binding protein complex interacting protein 1 is...
FAM55C                0.004   hypothetical protein LOC91775 
FAM55C                0.004   hypothetical protein LOC91775 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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