Guide to the Human Genome
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Name: CTSS Sequence: fasta or formatted (331aa) NCBI GI: 23110962
Description:

cathepsin S preproprotein

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         19           2
 C cysteine            3.3         11           1
 D aspartate           4.5         15           1
 E glutamate           5.7         19           2
 F phenylalanine       2.4          8           2
 G glycine             8.2         27           2
 H histidine           3.6         12           2
 I isoleucine          2.7          9           2
 K lysine              8.2         27           2
 L leucine             8.2         27           2
 M methionine          3.3         11           1
 N asparagine          5.7         19           1
 P proline             3.3         11           1
 Q glutamine           3.3         11           1
 R arginine            3.9         13           2
 S serine              8.2         27           2
 T threonine           3.6         12           2
 V valine              7.6         25           2
 W tryptophan          2.4          8           1
 Y tyrosine            6.0         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin S preproprotein 
CTSK                  0.510   cathepsin K preproprotein 
CTSL2                 0.450   cathepsin L2 preproprotein 
CTSL1                 0.441   cathepsin L1 preproprotein 
CTSL1                 0.441   cathepsin L1 preproprotein 
CTSH                  0.265   cathepsin H isoform b precursor 
CTSH                  0.262   cathepsin H isoform a preproprotein 
CTSF                  0.194   cathepsin F 
CTSO                  0.172   cathepsin O preproprotein 
CTSW                  0.166   cathepsin W preproprotein 
CTSC                  0.135   cathepsin C isoform a preproprotein 
CTSB                  0.121   cathepsin B preproprotein 
CTSB                  0.121   cathepsin B preproprotein 
CTSB                  0.121   cathepsin B preproprotein 
CTSB                  0.121   cathepsin B preproprotein 
CTSB                  0.121   cathepsin B preproprotein 
CTSZ                  0.119   cathepsin Z preproprotein 
TINAGL1               0.093   tubulointerstitial nephritis antigen-like 1 
TINAG                 0.083   tubulointerstitial nephritis antigen 
LOC100133189          0.058   PREDICTED: similar to Putative cathepsin L-like pro...
BLMH                  0.007   bleomycin hydrolase 
ZDHHC5                0.006   zinc finger, DHHC domain containing 5 
JPH3                  0.004   junctophilin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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