Guide to the Human Genome
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Name: CTSO Sequence: fasta or formatted (321aa) NCBI GI: 4557501
Description:

cathepsin O preproprotein

Referenced in:

Cysteine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         23           3
 C cysteine            2.5          8           1
 D aspartate           5.0         16           1
 E glutamate           4.0         13           2
 F phenylalanine       5.3         17           1
 G glycine             8.1         26           3
 H histidine           2.5          8           2
 I isoleucine          4.0         13           2
 K lysine              4.4         14           1
 L leucine             7.8         25           2
 M methionine          1.9          6           1
 N asparagine          5.0         16           2
 P proline             4.7         15           1
 Q glutamine           3.7         12           2
 R arginine            4.7         15           1
 S serine             10.9         35           2
 T threonine           2.8          9           1
 V valine              7.5         24           2
 W tryptophan          3.4         11           1
 Y tyrosine            4.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cathepsin O preproprotein 
CTSF                  0.205   cathepsin F 
CTSH                  0.188   cathepsin H isoform b precursor 
CTSH                  0.188   cathepsin H isoform a preproprotein 
CTSS                  0.178   cathepsin S preproprotein 
CTSL2                 0.178   cathepsin L2 preproprotein 
CTSL1                 0.171   cathepsin L1 preproprotein 
CTSL1                 0.171   cathepsin L1 preproprotein 
CTSK                  0.160   cathepsin K preproprotein 
CTSW                  0.158   cathepsin W preproprotein 
CTSC                  0.109   cathepsin C isoform a preproprotein 
CTSZ                  0.109   cathepsin Z preproprotein 
CTSB                  0.098   cathepsin B preproprotein 
CTSB                  0.098   cathepsin B preproprotein 
CTSB                  0.098   cathepsin B preproprotein 
CTSB                  0.098   cathepsin B preproprotein 
CTSB                  0.098   cathepsin B preproprotein 
TINAG                 0.074   tubulointerstitial nephritis antigen 
TINAGL1               0.060   tubulointerstitial nephritis antigen-like 1 
TRAK1                 0.008   OGT(O-Glc-NAc transferase)-interacting protein 106 ...
TRAK1                 0.008   OGT(O-Glc-NAc transferase)-interacting protein 106 K...
ADORA1                0.008   adenosine A1 receptor 
ADORA1                0.008   adenosine A1 receptor 
FURIN                 0.006   furin preproprotein 
SMARCC2               0.006   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.006   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.006   SWI/SNF-related matrix-associated actin-dependent r...
LRRIQ3                0.006   leucine-rich repeats and IQ motif containing 3 [Hom...
FAM82A1               0.005   family with sequence similarity 82, member A1 
C6orf114              0.005   hypothetical protein LOC85411 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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