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Search of human proteins with 221307494
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
(544 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221307494 chromodomain protein, Y chromosome-like isoform a [... 1082 0.0
gi|221136756 chromodomain protein, Y chromosome-like isoform d [... 815 0.0
gi|221136753 chromodomain protein, Y chromosome-like isoform d [... 815 0.0
gi|25453481 Y chromosome chromodomain protein 1, telomeric isofo... 689 0.0
gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo s... 689 0.0
gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens] 688 0.0
gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens] 688 0.0
gi|4757966 Y chromosome chromodomain protein 1, telomeric isofor... 675 0.0
gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo s... 675 0.0
gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens] 488 e-138
gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Hom... 189 6e-48
gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Hom... 172 9e-43
gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein ... 88 2e-17
gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratas... 87 3e-17
gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo... 85 1e-16
gi|41055989 M-phase phosphoprotein 8 [Homo sapiens] 77 4e-14
gi|188035910 heterochromatin protein 1-alpha [Homo sapiens] 67 3e-11
gi|188035908 heterochromatin protein 1-alpha [Homo sapiens] 67 3e-11
gi|6912292 heterochromatin protein 1-alpha [Homo sapiens] 67 3e-11
gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase pre... 67 3e-11
gi|20127408 mitochondrial trifunctional protein, alpha subunit p... 67 5e-11
gi|5803076 heterochromatin protein 1-beta [Homo sapiens] 63 6e-10
gi|187960037 heterochromatin protein 1-beta [Homo sapiens] 63 6e-10
gi|15082258 chromobox homolog 3 [Homo sapiens] 61 2e-09
gi|20544151 chromobox homolog 3 [Homo sapiens] 61 2e-09
gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A... 59 1e-08
gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isof... 57 6e-08
gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isof... 57 6e-08
gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens] 55 2e-07
gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isof... 53 6e-07
>gi|221307494 chromodomain protein, Y chromosome-like isoform a
[Homo sapiens]
Length = 544
Score = 1082 bits (2797), Expect = 0.0
Identities = 544/544 (100%), Positives = 544/544 (100%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT
Sbjct: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR
Sbjct: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE
Sbjct: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
Query: 181 VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALT 240
VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALT
Sbjct: 181 VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALT 240
Query: 241 ANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH 300
ANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH
Sbjct: 241 ANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH 300
Query: 301 ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD 360
ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD
Sbjct: 301 ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD 360
Query: 361 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 420
DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP
Sbjct: 361 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 420
Query: 421 YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM 480
YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM
Sbjct: 421 YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM 480
Query: 481 VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK 540
VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK
Sbjct: 481 VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK 540
Query: 541 IDEF 544
IDEF
Sbjct: 541 IDEF 544
>gi|221136756 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 815 bits (2106), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 133 MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG 192
MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG
Sbjct: 1 MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG 60
Query: 193 PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT 252
PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT
Sbjct: 61 PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT 120
Query: 253 GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS 312
GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS
Sbjct: 121 GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS 180
Query: 313 LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA 372
LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA
Sbjct: 181 LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA 240
Query: 373 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS 432
IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS
Sbjct: 241 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS 300
Query: 433 TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV 492
TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV
Sbjct: 301 TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV 360
Query: 493 VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 544
VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
Sbjct: 361 VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 412
>gi|221136753 chromodomain protein, Y chromosome-like isoform d
[Homo sapiens]
Length = 412
Score = 815 bits (2106), Expect = 0.0
Identities = 412/412 (100%), Positives = 412/412 (100%)
Query: 133 MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG 192
MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG
Sbjct: 1 MDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPEVAAEKPVGALLG 60
Query: 193 PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT 252
PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT
Sbjct: 61 PGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALTANGTTNIQTSVT 120
Query: 253 GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS 312
GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS
Sbjct: 121 GVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNS 180
Query: 313 LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA 372
LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA
Sbjct: 181 LNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEA 240
Query: 373 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS 432
IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS
Sbjct: 241 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS 300
Query: 433 TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV 492
TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV
Sbjct: 301 TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPV 360
Query: 493 VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 544
VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF
Sbjct: 361 VLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 412
>gi|25453481 Y chromosome chromodomain protein 1, telomeric isoform
a [Homo sapiens]
Length = 540
Score = 689 bits (1777), Expect = 0.0
Identities = 349/545 (64%), Positives = 429/545 (78%), Gaps = 6/545 (1%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A LS KNM++ S I+ L P SP +T V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASILSDTKNMEIINSTIETLAPDSPFDHKT-VSGFQKL--EKLDPIAADQQDTVVFK 176
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ +IHPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 235
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD RDQPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 236 AANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFT 295
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF++ L
Sbjct: 296 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLR 355
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
++R S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 356 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 415
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 416 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 475
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQR 539
M++IKELAS NP+VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLKY++
Sbjct: 476 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 535
Query: 540 KIDEF 544
KIDEF
Sbjct: 536 KIDEF 540
>gi|51538573 chromodomain protein, Y-linked, 1B isoform a [Homo
sapiens]
Length = 540
Score = 689 bits (1777), Expect = 0.0
Identities = 349/545 (64%), Positives = 429/545 (78%), Gaps = 6/545 (1%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A LS KNM++ S I+ L P SP +T V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASILSDTKNMEIINSTIETLAPDSPFDHKT-VSGFQKL--EKLDPIAADQQDTVVFK 176
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ +IHPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 235
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD RDQPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 236 AANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFT 295
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF++ L
Sbjct: 296 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLR 355
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
++R S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 356 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 415
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 416 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 475
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQR 539
M++IKELAS NP+VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLKY++
Sbjct: 476 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 535
Query: 540 KIDEF 544
KIDEF
Sbjct: 536 KIDEF 540
>gi|49355787 Y chromosome chromodomain protein 2B [Homo sapiens]
Length = 541
Score = 688 bits (1775), Expect = 0.0
Identities = 347/545 (63%), Positives = 427/545 (78%), Gaps = 5/545 (0%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A +LS KNM++ S I+ L P SP + V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKL--EKLDPIAADQQDTVVFK 177
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ ++HPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 178 VTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 236
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD R QPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 237 AANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFT 296
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF+R L
Sbjct: 297 QIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLR 356
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
+DR S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 357 NDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 416
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 417 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 476
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQR 539
M++IKELAS N +VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLKY++
Sbjct: 477 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 536
Query: 540 KIDEF 544
KIDEF
Sbjct: 537 KIDEF 541
>gi|4757968 Y chromosome chromodomain protein 2A [Homo sapiens]
Length = 541
Score = 688 bits (1775), Expect = 0.0
Identities = 347/545 (63%), Positives = 427/545 (78%), Gaps = 5/545 (0%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNCKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A +LS KNM++ S I+ L P SP + V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASTLSDTKNMEIINSTIETLAPDSPFDHKKTVSGFQKL--EKLDPIAADQQDTVVFK 177
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ ++HPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 178 VTEGKLLRDPLSHPGAEQTGIQNKTQMHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 236
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD R QPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 237 AANGTTDMHTSVPRVKGGQRNITDDSRGQPFIKKMHFTIRLTESAITYRDIVVKKEDGFT 296
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF+R L
Sbjct: 297 QIVLSTRSTEKNALNTEVIKEMVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVRHLR 356
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
+DR S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 357 NDRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 416
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 417 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 476
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQR 539
M++IKELAS N +VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLKY++
Sbjct: 477 MIQIKELASYNAIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLKYVEN 536
Query: 540 KIDEF 544
KIDEF
Sbjct: 537 KIDEF 541
>gi|4757966 Y chromosome chromodomain protein 1, telomeric isoform b
[Homo sapiens]
Length = 554
Score = 675 bits (1741), Expect = 0.0
Identities = 343/536 (63%), Positives = 421/536 (78%), Gaps = 6/536 (1%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A LS KNM++ S I+ L P SP +T V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASILSDTKNMEIINSTIETLAPDSPFDHKT-VSGFQKL--EKLDPIAADQQDTVVFK 176
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ +IHPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 235
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD RDQPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 236 AANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFT 295
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF++ L
Sbjct: 296 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLR 355
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
++R S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 356 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 415
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 416 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 475
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLK 535
M++IKELAS NP+VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLK
Sbjct: 476 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLK 531
>gi|51538581 chromodomain protein, Y-linked, 1B isoform b [Homo
sapiens]
Length = 554
Score = 675 bits (1741), Expect = 0.0
Identities = 343/536 (63%), Positives = 421/536 (78%), Gaps = 6/536 (1%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS+E +EVE IVDKR++K G T+YLVRWKGYD +DDTWEPEQHL+NCE+ +HDFNRR T
Sbjct: 1 MASQE-FEVEAIVDKRQDKNGNTQYLVRWKGYDKQDDTWEPEQHLMNCEKCVHDFNRRQT 59
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
EKQK+ T T T+R NNAR++ SRST +N+SK SPK V K H SKN +LFAAS+ R
Sbjct: 60 EKQKKLTWTTTSRIFSNNARRRTSRSTKANYSKNSPKTPVTDKHHRSKNRKLFAASKNVR 119
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
+ A LS KNM++ S I+ L P SP +T V GFQ EKLDP+ Q+DTV +
Sbjct: 120 RKAASILSDTKNMEIINSTIETLAPDSPFDHKT-VSGFQKL--EKLDPIAADQQDTVVFK 176
Query: 181 VAAEKPV-GALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDAL 239
V K + L PGAE+ + ++ +IHPL+ Q+ G VTA+MATG A KG +D L
Sbjct: 177 VTEGKLLRDPLSRPGAEQTGIQNKTQIHPLMSQMSGSVTASMATGSATR-KGIVVLIDPL 235
Query: 240 TANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFT 299
ANGTT++ TSV V +R DD RDQPF K++ F++R TESA YRDIVV+K+DGFT
Sbjct: 236 AANGTTDMHTSVPRVKGGQRNITDDSRDQPFIKKMHFTIRLTESASTYRDIVVKKEDGFT 295
Query: 300 HILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLT 359
I+LST+S+E N+LN EV++E+ +AL++AAADDSKLVL SA GSVFCCGLDF YF++ L
Sbjct: 296 QIVLSTRSTEKNALNTEVIKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFGYFVKHLR 355
Query: 360 DDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQT 419
++R S +M + I+NFVNTFIQFKKPI+V+VNGPAIGLGASILPLCD+VWANEKAWFQT
Sbjct: 356 NNRNTASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQT 415
Query: 420 PYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV 479
PYTTFGQSPDGCS++ FPK+MG ASANEML++GRKLTA+EAC KGLVSQVF GTFTQEV
Sbjct: 416 PYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV 475
Query: 480 MVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLK 535
M++IKELAS NP+VLEE KALVRCN+K+ELEQANERECEVL+KIW SAQG++SMLK
Sbjct: 476 MIQIKELASYNPIVLEECKALVRCNIKLELEQANERECEVLRKIWSSAQGIESMLK 531
>gi|116235487 chromodomain protein, Y-like 2 [Homo sapiens]
Length = 506
Score = 488 bits (1257), Expect = e-138
Identities = 279/543 (51%), Positives = 354/543 (65%), Gaps = 38/543 (6%)
Query: 1 MASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHT 60
MAS +LYEVERIVDKRKNKKGK EYL+RWKGY S +DTWEPE HL++CEE+I +FN H
Sbjct: 1 MASGDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLLHCEEFIDEFNGLHM 60
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFR 120
K K + + TS K + S + K S + GK + + R
Sbjct: 61 SKDKRIKSGKQSSTS-----KLLRDSRGPSVEKLSHRPSDPGKSKGTSHK---------R 106
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTVAPE 180
K P L+ K K V RT G Q + P+++ Q +
Sbjct: 107 KRINPPLAKPKKGYSGKPSSGGDRATKTVSYRTTPSGLQ------IMPLKKSQNGMENGD 160
Query: 181 VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMATGLAVNGKGTSPFMDALT 240
+EK G G+ + + + Q G AT LA NG G+ ALT
Sbjct: 161 AGSEKDERHF-GNGSHQPGLDLNDHVGE---QDMGECDVNHAT-LAENGLGS-----ALT 210
Query: 241 ANGTTNIQTSVTGVTASKRKFIDDRRDQPFDKRLRFSVRQTESAYRYRDIVVRKQDGFTH 300
NG N+ + V KRK ++ +D FDKRLR+SVRQ ES R+RDIVVRK++GFTH
Sbjct: 211 -NGGLNLHSPV------KRK-LEAEKDYVFDKRLRYSVRQNESNCRFRDIVVRKEEGFTH 262
Query: 301 ILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTD 360
ILLS+++S+NN+L PE+M+EV+ AL AA DDSKL+LLSAVGSVFC GLD+ Y I RL+
Sbjct: 263 ILLSSQTSDNNALTPEIMKEVRRALCNAATDDSKLLLLSAVGSVFCSGLDYSYLIGRLSS 322
Query: 361 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 420
DR++EST++AEAIR+FV FIQFKKPI+VA+NGPA+GLGASILPLCD+VWA+EKAWFQTP
Sbjct: 323 DRRKESTRIAEAIRDFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTP 382
Query: 421 YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM 480
Y T +P GCS+ FP+I+G A ANEML GRKLTAQEAC +GLVSQVFWP TF+QEVM
Sbjct: 383 YATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVFWPTTFSQEVM 442
Query: 481 VRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK 540
+R+KE+ASC+ VVLEESK LVR +K LE NE+EC +LK++W S++G+DS+ YLQ K
Sbjct: 443 LRVKEMASCSAVVLEESKCLVRSFLKSVLEDVNEKECLMLKQLWSSSKGLDSLFSYLQDK 502
Query: 541 IDE 543
I E
Sbjct: 503 IYE 505
>gi|45643119 peroxisomal D3,D2-enoyl-CoA isomerase isoform 1 [Homo
sapiens]
Length = 364
Score = 189 bits (480), Expect = 6e-48
Identities = 99/254 (38%), Positives = 150/254 (59%), Gaps = 1/254 (0%)
Query: 287 YRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDSKLVLLSAVGSVFC 346
+ +VV +DG T I+ + + + N++N E+ E+ AL A+ DDS + +L+ G +
Sbjct: 109 FETLVVTSEDGITKIMFN-RPKKKNAINTEMYHEIMRALKAASKDDSIITVLTGNGDYYS 167
Query: 347 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLC 406
G D F + ++ A +R FV FI F KP+I VNGPA+G+ ++L L
Sbjct: 168 SGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLF 227
Query: 407 DVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLV 466
D V+A+++A F TP++ GQSP+GCS+ FPKIM A A EML+ G+KLTA EAC +GLV
Sbjct: 228 DAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKKLTAGEACAQGLV 287
Query: 467 SQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLKKIWGS 526
++VF TF +EV R+K A P L SK ++R + +L N EC VL+ W S
Sbjct: 288 TEVFPDSTFQKEVWTRLKAFAKLPPNALRISKEVIRKREREKLHAVNAEECNVLQGRWLS 347
Query: 527 AQGMDSMLKYLQRK 540
+ ++++ +L RK
Sbjct: 348 DECTNAVVNFLSRK 361
>gi|45643121 peroxisomal D3,D2-enoyl-CoA isomerase isoform 2 [Homo
sapiens]
Length = 227
Score = 172 bits (435), Expect = 9e-43
Identities = 90/221 (40%), Positives = 131/221 (59%)
Query: 320 EVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNT 379
E+ AL A+ DDS + +L+ G + G D F + ++ A +R FV
Sbjct: 4 EIMRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGC 63
Query: 380 FIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKI 439
FI F KP+I VNGPA+G+ ++L L D V+A+++A F TP++ GQSP+GCS+ FPKI
Sbjct: 64 FIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDRATFHTPFSHLGQSPEGCSSYTFPKI 123
Query: 440 MGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKA 499
M A A EML+ G+KLTA EAC +GLV++VF TF +EV R+K A P L SK
Sbjct: 124 MSPAKATEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRLKAFAKLPPNALRISKE 183
Query: 500 LVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRK 540
++R + +L N EC VL+ W S + ++++ +L RK
Sbjct: 184 VIRKREREKLHAVNAEECNVLQGRWLSDECTNAVVNFLSRK 224
>gi|70995211 peroxisomal enoyl-coenzyme A hydratase-like protein
[Homo sapiens]
Length = 328
Score = 87.8 bits (216), Expect = 2e-17
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 11/218 (5%)
Query: 291 VVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAAD-DSKLVLLSAVGSVFCCGL 349
V Q H+ L+ + ++ N++N RE+ + + D D + V++S G +F G+
Sbjct: 60 VTSAQKHVLHVQLN-RPNKRNAMNKVFWREMVECFNKISRDADCRAVVISGAGKMFTAGI 118
Query: 350 DFIYFIRRLT----DDRKRESTKMAEAIRNFVNTFIQFK---KPIIVAVNGPAIGLGASI 402
D + + DD R S + + I + TF + KP+I AV+G IG G +
Sbjct: 119 DLMDMASDILQPKGDDVARISWYLRDIITRYQETFNVIERCPKPVIAAVHGGCIGGGVDL 178
Query: 403 LPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGAS-ANEMLLSGRKLTAQEAC 461
+ CD+ + + A+FQ G + D + PK++G S NE+ + RK+ A EA
Sbjct: 179 VTACDIRYCAQDAFFQVKEVDVGLAADVGTLQRLPKVIGNQSLVNELAFTARKMMADEAL 238
Query: 462 GKGLVSQVFWPGTFTQEVMVRI-KELASCNPVVLEESK 498
G GLVS+VF + + + E++S +PV ++ +K
Sbjct: 239 GSGLVSRVFPDKEVMLDAALALAAEISSKSPVAVQSTK 276
>gi|194097323 mitochondrial short-chain enoyl-coenzyme A hydratase 1
precursor [Homo sapiens]
Length = 290
Score = 87.4 bits (215), Expect = 3e-17
Identities = 59/235 (25%), Positives = 117/235 (49%), Gaps = 7/235 (2%)
Query: 311 NSLNPEVMREVQSALSTAAADDSK-LVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKM 369
N+L ++ E+ AL T D + ++L+ F G D + + +
Sbjct: 59 NALCDGLIDELNQALKTFEEDPAVGAIVLTGGDKAFAAGADI-----KEMQNLSFQDCYS 113
Query: 370 AEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPD 429
++ ++++ + Q KKP+I AVNG A G G + +CD+++A EKA F P G P
Sbjct: 114 SKFLKHW-DHLTQVKKPVIAAVNGYAFGGGCELAMMCDIIYAGEKAQFAQPEILIGTIPG 172
Query: 430 GCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVMVRIKELASC 489
T + +G + A EM+L+G +++AQ+A GLVS++ T +E + +++AS
Sbjct: 173 AGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKICPVETLVEEAIQCAEKIASN 232
Query: 490 NPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLKYLQRKIDEF 544
+ +V+ +K V +M L + ++ E ++ + + + M +++++ F
Sbjct: 233 SKIVVAMAKESVNAAFEMTLTEGSKLEKKLFYSTFATDDRKEGMTAFVEKRKANF 287
>gi|31542718 enoyl Coenzyme A hydratase domain containing 3 [Homo
sapiens]
Length = 303
Score = 85.1 bits (209), Expect = 1e-16
Identities = 71/259 (27%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
Query: 288 RDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQS-ALSTAAADDSKLVLLSAVGSVFC 346
R R+ DG +I+LS + N+L+ +++ +QS L A ++D K++++SA G VF
Sbjct: 46 RPTSARQLDGIRNIVLSNPK-KRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFS 104
Query: 347 CGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK---PIIVAVNGPAIGLGASIL 403
G D ++ LT+++ R+ AE + + + P+I VNG A G ++
Sbjct: 105 SGHD----LKELTEEQGRDYH--AEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLV 158
Query: 404 PLCDVVWANEKAWFQTPYTTFGQSPDGCST--VMFPKIMGGASANEMLLSGRKLTAQEAC 461
CD+ A++K+ F TP G CST V + + A EML +G ++AQEA
Sbjct: 159 ASCDIAVASDKSSFATPGVNVGLF---CSTPGVALARAVPRKVALEMLFTGEPISAQEAL 215
Query: 462 GKGLVSQVFWPGTFTQEVMVRIKELASCNPVVLEESKALVRCNMKMELEQANERECEVLK 521
GL+S+V +E M +++AS + V+ KA + +L A + +
Sbjct: 216 LHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMV 275
Query: 522 KIWGSAQGMDSMLKYLQRK 540
G + + +LQ++
Sbjct: 276 DNLALRDGQEGITAFLQKR 294
>gi|41055989 M-phase phosphoprotein 8 [Homo sapiens]
Length = 860
Score = 77.0 bits (188), Expect = 4e-14
Identities = 57/177 (32%), Positives = 90/177 (50%), Gaps = 14/177 (7%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
E+++EVE+I+D K + GK Y VRWKGY S+DDTWEPE HL +C+E + +F ++ E +
Sbjct: 56 EDVFEVEKILDM-KTEGGKVLYKVRWKGYTSDDDTWEPEIHLEDCKEVLLEFRKKIAENK 114
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQ---KFR 120
++ R S NN I + + + ++ K K + K Q S K +
Sbjct: 115 AKAVRKDIQRLSLNN---DIFEANSDSDQQSETKEDTSPKKKKKKLRQREEKSPDDLKKK 171
Query: 121 KNTAPSLSSRKNMDLAKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPVEQGQEDTV 177
K A L + DL +S ++ LV K R SE+ E+L ++ ++D V
Sbjct: 172 KAKAGKLKDKSKPDL-ESSLESLVFDLRTKKRI------SEAKEELKESKKPKKDEV 221
>gi|188035910 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
EE Y VE+++D+R KG+ EYL++WKG+ E +TWEPE++L +C E I +F +++ +K
Sbjct: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95
KE + S +N RK SNFS ++
Sbjct: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98
>gi|188035908 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
EE Y VE+++D+R KG+ EYL++WKG+ E +TWEPE++L +C E I +F +++ +K
Sbjct: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95
KE + S +N RK SNFS ++
Sbjct: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98
>gi|6912292 heterochromatin protein 1-alpha [Homo sapiens]
Length = 191
Score = 67.4 bits (163), Expect = 3e-11
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 10/92 (10%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
EE Y VE+++D+R KG+ EYL++WKG+ E +TWEPE++L +C E I +F +++ +K
Sbjct: 17 EEEYVVEKVLDRRV-VKGQVEYLLKWKGFSEEHNTWEPEKNL-DCPELISEFMKKY-KKM 73
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTS 95
KE + S +N RK SNFS ++
Sbjct: 74 KEGENNKPREKSESNKRK-------SNFSNSA 98
>gi|4502327 AU RNA binding protein/enoyl-Coenzyme A hydratase
precursor [Homo sapiens]
Length = 339
Score = 67.4 bits (163), Expect = 3e-11
Identities = 60/250 (24%), Positives = 106/250 (42%), Gaps = 18/250 (7%)
Query: 269 PFDKRLRFSVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTA 328
P KR S +TE R R + +++ +L ++ NSL+ +++ + A+
Sbjct: 61 PAPKRGYSSEMKTEDELRVRHL--EEENRGIVVLGINRAYGKNSLSKNLIKMLSKAVDAL 118
Query: 329 AADDS--KLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMA---EAIRNFVNTFIQF 383
+D +++ S V +FC G D L + K S+++ IR +N
Sbjct: 119 KSDKKVRTIIIRSEVPGIFCAGAD-------LKERAKMSSSEVGPFVSKIRAVINDIANL 171
Query: 384 KKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGA 443
P I A++G A+G G + CD+ A A T P G T P+ +G +
Sbjct: 172 PVPTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMS 231
Query: 444 SANEMLLSGRKLTAQEACGKGLVSQVFWPG----TFTQEVMVRIKELASCNPVVLEESKA 499
A E++ S R L +EA GL+S V ++ + +E PV + +K
Sbjct: 232 LAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKL 291
Query: 500 LVRCNMKMEL 509
+ M+++L
Sbjct: 292 AINQGMEVDL 301
>gi|20127408 mitochondrial trifunctional protein, alpha subunit
precursor [Homo sapiens]
Length = 763
Score = 66.6 bits (161), Expect = 5e-11
Identities = 47/176 (26%), Positives = 81/176 (46%), Gaps = 7/176 (3%)
Query: 301 ILLSTKSSENNSLNPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLDFIYFIRRL 358
+ +++ +S+ N+L+ E+ E ++ A D VL+S+ F G D
Sbjct: 52 VRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACK 111
Query: 359 TDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD--VVWANEKAW 416
T +E T++++ + V + KPI+ A+NG +G G + C + + K
Sbjct: 112 T---LQEVTQLSQEAQRIVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTV 168
Query: 417 FQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWP 472
TP G P T PK++G +A +M+L+GR + A A GLV Q+ P
Sbjct: 169 LGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQLVEP 224
>gi|5803076 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 63.2 bits (152), Expect = 6e-10
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
EE Y VE+++D+R KGK EYL++WKG+ ED+TWEPE++L +C + I +F Q
Sbjct: 18 EEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF------LQ 69
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123
+ T T++ S RK S S + ++ PK K ES+ + FA + +
Sbjct: 70 SQKTAHETDK-SEGGKRKADSDSEDKG-EESKPKK----KKEESEKPRGFARGLEPERII 123
Query: 124 APSLSSRKNMDLAK 137
+ SS + M L K
Sbjct: 124 GATDSSGELMFLMK 137
>gi|187960037 heterochromatin protein 1-beta [Homo sapiens]
Length = 185
Score = 63.2 bits (152), Expect = 6e-10
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 14/134 (10%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
EE Y VE+++D+R KGK EYL++WKG+ ED+TWEPE++L +C + I +F Q
Sbjct: 18 EEEYVVEKVLDRRV-VKGKVEYLLKWKGFSDEDNTWEPEENL-DCPDLIAEF------LQ 69
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123
+ T T++ S RK S S + ++ PK K ES+ + FA + +
Sbjct: 70 SQKTAHETDK-SEGGKRKADSDSEDKG-EESKPKK----KKEESEKPRGFARGLEPERII 123
Query: 124 APSLSSRKNMDLAK 137
+ SS + M L K
Sbjct: 124 GATDSSGELMFLMK 137
>gi|15082258 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 61.2 bits (147), Expect = 2e-09
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 2 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF-NRRHT 60
A E + VE+++D+R GK EY ++WKG+ D+TWEPE++L +C E I F N +
Sbjct: 25 AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKA 82
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHE 106
K+K+ T R S +++ S+S + P+ G D E
Sbjct: 83 GKEKDG----TKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPE 124
>gi|20544151 chromobox homolog 3 [Homo sapiens]
Length = 183
Score = 61.2 bits (147), Expect = 2e-09
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 7/106 (6%)
Query: 2 ASEELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDF-NRRHT 60
A E + VE+++D+R GK EY ++WKG+ D+TWEPE++L +C E I F N +
Sbjct: 25 AEPEEFVVEKVLDRRV-VNGKVEYFLKWKGFTDADNTWEPEENL-DCPELIEAFLNSQKA 82
Query: 61 EKQKESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHE 106
K+K+ T R S +++ S+S + P+ G D E
Sbjct: 83 GKEKDG----TKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPE 124
>gi|68989263 enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A
dehydrogenase [Homo sapiens]
Length = 723
Score = 58.5 bits (140), Expect = 1e-08
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 302 LLSTKSSENNSLNPEVMREVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTD 360
L+ ++ N+++ ++R+++ L A D + K +++ F G D IR +
Sbjct: 13 LIRLRNPPVNAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGAD----IRGFSA 68
Query: 361 DRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTP 420
R T + + V+ + +KP++ A+ G A G G + C A+ +A P
Sbjct: 69 PRTFGLT-----LGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLP 123
Query: 421 YTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEVM 480
T G P T + P++ G +A +++ SGR++ A EA G++ +V + E
Sbjct: 124 EVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKVV--NSDPVEEA 181
Query: 481 VRIKELASCNPVVLEESKALVRCNMKME 508
+R + S P+ ES+ L CN ++
Sbjct: 182 IRFAQRVSDQPL---ESRRL--CNKPIQ 204
>gi|157694516 enoyl Coenzyme A hydratase domain containing 1 isoform
1 [Homo sapiens]
Length = 301
Score = 56.6 bits (135), Expect = 6e-08
Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
Query: 278 VRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREV-QSALSTAAADDSKLV 336
V++T + I ++K+D IL S N+ + +M ++ + + + K +
Sbjct: 37 VKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGL 96
Query: 337 LLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 396
++ + F G D + ++ L + + ++N + F++ + V G A+
Sbjct: 97 IVRGAKNTFSSGSD-LNAVKSL--GTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWAL 153
Query: 397 GLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLT 456
G GA CD ++ + + G P T +I+G A ++L KL
Sbjct: 154 GGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLD 213
Query: 457 AQEACGKGLVSQVFWPGTFT---QEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 513
++ A G+V +V T +E +K+ P V+ K V ++ LE+A
Sbjct: 214 SKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 273
Query: 514 ERECEVLKKIWGSAQGMDSMLK 535
+ E ++L +WG ++++ K
Sbjct: 274 QNERDLLGTVWGGPANLEAIAK 295
>gi|213417737 enoyl Coenzyme A hydratase domain containing 1 isoform
5 [Homo sapiens]
Length = 307
Score = 56.6 bits (135), Expect = 6e-08
Identities = 53/262 (20%), Positives = 110/262 (41%), Gaps = 7/262 (2%)
Query: 278 VRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMREV-QSALSTAAADDSKLV 336
V++T + I ++K+D IL S N+ + +M ++ + + + K +
Sbjct: 43 VKKTLQQFPGGSIDLQKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGL 102
Query: 337 LLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAI 396
++ + F G D + ++ L + + ++N + F++ + V G A+
Sbjct: 103 IVRGAKNTFSSGSD-LNAVKSL--GTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWAL 159
Query: 397 GLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLLSGRKLT 456
G GA CD ++ + + G P T +I+G A ++L KL
Sbjct: 160 GGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLD 219
Query: 457 AQEACGKGLVSQVFWPGTFT---QEVMVRIKELASCNPVVLEESKALVRCNMKMELEQAN 513
++ A G+V +V T +E +K+ P V+ K V ++ LE+A
Sbjct: 220 SKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQGPPEVIRALKKSVCSGRELYLEEAL 279
Query: 514 ERECEVLKKIWGSAQGMDSMLK 535
+ E ++L +WG ++++ K
Sbjct: 280 QNERDLLGTVWGGPANLEAIAK 301
>gi|61743963 chromobox homolog 2 isoform 1 [Homo sapiens]
Length = 532
Score = 55.1 bits (131), Expect = 2e-07
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 20/222 (9%)
Query: 4 EELYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEKQ 63
E+++ E I+ KR +KGK EYLV+W+G+ S+ ++WEPE+++++ + F ++ EK+
Sbjct: 9 EQVFAAECILSKRL-RKGKLEYLVKWRGWSSKHNSWEPEENILD-PRLLLAFQKKEHEKE 66
Query: 64 KESTLTRTNRTSPNNARKQISRSTNSNFSKTSPKALVIGKDHESKNSQLFAASQKFRKNT 123
++ + + RK + S+ S SK K+ ++ + ++S ++
Sbjct: 67 VQN--RKRGKRPRGRPRKLTAMSSCSRRSKL--------KEPDAPSKSKSSSSSSSSTSS 116
Query: 124 APSLSSRKNMDL-AKSGIKILVPKSPVKSRTAVDGFQSESPEKLDPV--EQGQEDTVAPE 180
+ S + DL AK G + PV + A PE DP+ ++G++ +
Sbjct: 117 SSSSDEEDDSDLDAKRGPRGR-ETHPVPQKKA--QILVAKPELKDPIRKKRGRKPLPPEQ 173
Query: 181 VAAEKPVGALLGPGAERARMGSRPRIHPLVPQVPGPVTAAMA 222
A +PV L + AR L P + PV A
Sbjct: 174 KATRRPVS--LAKVLKTARKDLGAPASKLPPPLSAPVAGLAA 213
>gi|157694520 enoyl Coenzyme A hydratase domain containing 1 isoform
3 [Homo sapiens]
Length = 226
Score = 53.1 bits (126), Expect = 6e-07
Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 3/166 (1%)
Query: 373 IRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCS 432
++N + F++ + V G A+G GA CD ++ + + G P
Sbjct: 55 MQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGG 114
Query: 433 TVMFPKIMGGASANEMLLSGRKLTAQEACGKGLVSQVFWPGTFT---QEVMVRIKELASC 489
T +I+G A ++L KL ++ A G+V +V T +E +K+
Sbjct: 115 TTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSSDETKSLEEAQEWLKQFIQG 174
Query: 490 NPVVLEESKALVRCNMKMELEQANERECEVLKKIWGSAQGMDSMLK 535
P V+ K V ++ LE+A + E ++L +WG ++++ K
Sbjct: 175 PPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAK 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,621,353
Number of Sequences: 37866
Number of extensions: 882340
Number of successful extensions: 3508
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 3370
Number of HSP's gapped (non-prelim): 166
length of query: 544
length of database: 18,247,518
effective HSP length: 107
effective length of query: 437
effective length of database: 14,195,856
effective search space: 6203589072
effective search space used: 6203589072
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.