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Search of human proteins with 221136939
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|221136939 pre-mRNA processing factor 31 homolog [Homo
sapiens]
(499 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|221136939 pre-mRNA processing factor 31 homolog [Homo sapiens] 967 0.0
gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens] 129 5e-30
gi|32483374 nucleolar protein 5A [Homo sapiens] 122 6e-28
gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens] 39 0.011
gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens] 39 0.011
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 37 0.042
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 37 0.042
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 36 0.071
gi|109134336 SH3-domain binding protein 5 (BTK-associated) isofo... 36 0.071
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 36 0.093
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 36 0.093
gi|31317305 M-phase phosphoprotein 10 [Homo sapiens] 35 0.16
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi... 35 0.16
gi|17975763 myelin transcription factor 1 [Homo sapiens] 35 0.21
gi|68348702 breast cancer metastasis suppressor 1 isoform 2 [Hom... 34 0.27
gi|17530785 breast cancer metastasis suppressor 1 isoform 1 [Hom... 34 0.27
gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens] 34 0.27
gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens] 34 0.27
gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo sap... 34 0.27
gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 34 0.27
gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens] 34 0.27
gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens] 34 0.27
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 34 0.27
gi|163644325 MCF.2 cell line derived transforming sequence-like ... 34 0.27
gi|163644323 MCF.2 cell line derived transforming sequence-like ... 34 0.27
gi|169210281 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 34 0.35
gi|169210488 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 34 0.35
gi|169210051 PREDICTED: similar to M-phase phosphoprotein 10 (U3... 34 0.35
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 34 0.35
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 34 0.35
>gi|221136939 pre-mRNA processing factor 31 homolog [Homo sapiens]
Length = 499
Score = 967 bits (2499), Expect = 0.0
Identities = 499/499 (100%), Positives = 499/499 (100%)
Query: 1 MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF 60
MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF
Sbjct: 1 MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF 60
Query: 61 AEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK 120
AEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK
Sbjct: 61 AEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK 120
Query: 121 RFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLS 180
RFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLS
Sbjct: 121 RFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLS 180
Query: 181 EEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTN 240
EEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTN
Sbjct: 181 EEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTN 240
Query: 241 LSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCT 300
LSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCT
Sbjct: 241 LSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCT 300
Query: 301 LAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYR 360
LAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYR
Sbjct: 301 LAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYR 360
Query: 361 KMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI 420
KMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI
Sbjct: 361 KMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI 420
Query: 421 SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYF 480
SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYF
Sbjct: 421 SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYF 480
Query: 481 SSMAEFLKVKGEKSGLMST 499
SSMAEFLKVKGEKSGLMST
Sbjct: 481 SSMAEFLKVKGEKSGLMST 499
>gi|7706254 NOP58 ribonucleoprotein homolog [Homo sapiens]
Length = 529
Score = 129 bits (325), Expect = 5e-30
Identities = 70/236 (29%), Positives = 129/236 (54%), Gaps = 2/236 (0%)
Query: 92 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151
+IV A +L +++ ELN R+ Y FPEL ++ + L Y + ++++G+ K
Sbjct: 161 MIVQAISLLDDLDKELNNYIMRCREWYGWHFPELGKIISDNLTYCKCLQKVGDR--KNYA 218
Query: 152 NENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESR 211
+ L ++L V A + G ++SEE++ + C +E++ + ++YEY+++R
Sbjct: 219 SAKLSELLPEEVEAEVKAAAEISMGTEVSEEDICNILHLCTQVIEISEYRTQLYEYLQNR 278
Query: 212 MSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHT 271
M IAPN+++++G A+++ AG L NL+K A + +LGA++ S P
Sbjct: 279 MMAIAPNVTVMVGELVGARLIAHAGSLLNLAKHAASTVQILGAEKALFRALKSRRDTPKY 338
Query: 272 GYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERK 327
G IYH+ +V P + K +R++AAK LA R D+F E + +G E + ++E +
Sbjct: 339 GLIYHASLVGQTSPKHKGKISRMLAAKTVLAIRYDAFGEDSSSAMGVENRAKLEAR 394
>gi|32483374 nucleolar protein 5A [Homo sapiens]
Length = 594
Score = 122 bits (307), Expect = 6e-28
Identities = 74/304 (24%), Positives = 152/304 (50%), Gaps = 13/304 (4%)
Query: 92 VIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKN 151
+I+ + +L +++ ++N +R+ Y FPEL ++ + Y R + +GN + ++
Sbjct: 167 MIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNED 226
Query: 152 N-ENLQQI-LTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVE 209
E L+++ + A + + ++ G +S +L +E + L+ + ++ Y+
Sbjct: 227 KLEKLEELTMDGAKAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLR 286
Query: 210 SRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLP 269
S+MS +AP+LS +IG + A+++ AG LTNL+K PA + +LGA++ + P
Sbjct: 287 SKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTP 346
Query: 270 HTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFD 329
G I+HS + + + +R +A KC++A+R+D F E G +L++++E +
Sbjct: 347 KYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRIDCFSEVPTSVFGEKLREQVEERLS 406
Query: 330 KWQ--EPP---------PVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRM 378
++ E P + Q + A + + +K+ +R +K K+RL + N
Sbjct: 407 FYETGEIPRKNLDVMKEAMVQAEEAAAEITRKLEKQEKKRLKKEKKRLAALALASSENSS 466
Query: 379 SFGE 382
S E
Sbjct: 467 STPE 470
>gi|154350244 hypothetical protein LOC79632 isoform 2 [Homo sapiens]
Length = 971
Score = 38.9 bits (89), Expect = 0.011
Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 1 MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQ--LDLSGDSVKTIAKLWDSK 58
++ A++ + L++ + E G E +++D QE Q LDL+ DS+K
Sbjct: 425 LNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETK------ 478
Query: 59 MFAEIMMKIE-EYISKQAKASEVMGPVEAAPEYRVIVDANNLTVE-----------IENE 106
+ ++ +E E ++ + E + ++ + +V A++L ++ + E
Sbjct: 479 ---DALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREE 535
Query: 107 LNIIHKFIRDKYSKRFPELESLVPNAL--DYIRTVKELGNSLDKCKNNENLQQILTNATI 164
L + H+ + + +L+ NA + + V++L N + K N +Q L+ +
Sbjct: 536 LRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQ--LSQSQT 593
Query: 165 MVVSVTASTTQGQQLSEEELERLEE 189
+ + A TQ +Q +ELE LEE
Sbjct: 594 SLQQLQAQFTQERQRLTQELEELEE 618
>gi|154350226 hypothetical protein LOC79632 isoform 1 [Homo sapiens]
Length = 1140
Score = 38.9 bits (89), Expect = 0.011
Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 27/205 (13%)
Query: 1 MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQ--LDLSGDSVKTIAKLWDSK 58
++ A++ + L++ + E G E +++D QE Q LDL+ DS+K
Sbjct: 545 LNTANQEIGHLQDMVRKSEQGLGSAEGLIASLQDSQERLQNELDLTKDSLKETK------ 598
Query: 59 MFAEIMMKIE-EYISKQAKASEVMGPVEAAPEYRVIVDANNLTVE-----------IENE 106
+ ++ +E E ++ + E + ++ + +V A++L ++ + E
Sbjct: 599 ---DALLNVEGELEQERQQHEETIAAMKEEEKLKVDKMAHDLEIKWTENLRQECSKLREE 655
Query: 107 LNIIHKFIRDKYSKRFPELESLVPNAL--DYIRTVKELGNSLDKCKNNENLQQILTNATI 164
L + H+ + + +L+ NA + + V++L N + K N +Q L+ +
Sbjct: 656 LRLQHEEDKKSAMSQLLQLKDREKNAARDSWQKKVEDLLNQISLLKQNLEIQ--LSQSQT 713
Query: 165 MVVSVTASTTQGQQLSEEELERLEE 189
+ + A TQ +Q +ELE LEE
Sbjct: 714 SLQQLQAQFTQERQRLTQELEELEE 738
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 37.0 bits (84), Expect = 0.042
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 17 EEEGGSYGEEEEEPAIEDVQEETQL----DLSGDSVKTIAKLWDSKMFAEIMMKIEEYIS 72
E+E ++ E E VQE+ L +LS D +K A+L K + E I
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQL--EKTIETLRENSERQIK 554
Query: 73 KQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK--RFPELESLVP 130
+ +E + ++ R + A +IE E I+H+ I++ SK + + +
Sbjct: 555 ILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIK 614
Query: 131 NALDYIRT----VKELGNSLDKC-KNNENLQQILTNATIMVVSVTASTTQGQQLSEEELE 185
L++ + +EL N L K NE LQ+ +TN I + A + +L E E
Sbjct: 615 KELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSEL-ERENR 673
Query: 186 RLEEACD 192
+L++ D
Sbjct: 674 KLKKTLD 680
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 37.0 bits (84), Expect = 0.042
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 14/187 (7%)
Query: 17 EEEGGSYGEEEEEPAIEDVQEETQL----DLSGDSVKTIAKLWDSKMFAEIMMKIEEYIS 72
E+E ++ E E VQE+ L +LS D +K A+L K + E I
Sbjct: 497 EKENQRLSKKVEILENEIVQEKQSLQNCQNLSKDLMKEKAQL--EKTIETLRENSERQIK 554
Query: 73 KQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSK--RFPELESLVP 130
+ +E + ++ R + A +IE E I+H+ I++ SK + + +
Sbjct: 555 ILEQENEHLNQTVSSLRQRSQISAEARVKDIEKENKILHESIKETSSKLSKIEFEKRQIK 614
Query: 131 NALDYIRT----VKELGNSLDKC-KNNENLQQILTNATIMVVSVTASTTQGQQLSEEELE 185
L++ + +EL N L K NE LQ+ +TN I + A + +L E E
Sbjct: 615 KELEHYKEKGERAEELENELHHLEKENELLQKKITNLKITCEKIEALEQENSEL-ERENR 673
Query: 186 RLEEACD 192
+L++ D
Sbjct: 674 KLKKTLD 680
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 36.2 bits (82), Expect = 0.071
Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 15/201 (7%)
Query: 6 ELLADLE-EAAEEEEGGSYGEEEEEPAIE---DVQEETQLDLSGDSVKTIAKLWDSKMFA 61
EL+A+ + E EE E G +EEEE + DLS S + ++ +
Sbjct: 302 ELIAEAKAEVTEEVEDGKEEDEEEETENSLPIPASKRASSDLSIASSEEDKLSQNACILE 361
Query: 62 EIMMKIEEYISKQAKASEVMG--PVEAAPEYRVIVDAN----NLTVEIENELNIIHKFIR 115
+ K E S+ S+++ P PE + + D N + +E EL+ I+
Sbjct: 362 SVSEKTERSNSEDKLNSKILNEKPTTDEPE-KAVEDINEHITDAQLEAMTELHDRTAVIK 420
Query: 116 DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQ 175
+ ++ P+LE+L P+ D TV NS+ + K N + + TN + S +
Sbjct: 421 ENEREKRPKLENL-PDTEDQ-ETVDI--NSVSEGKENNIMITLETNIEHNLKSEEEKDQE 476
Query: 176 GQQLSEEELERLEEACDMALE 196
QQ+ E +L + EE D L+
Sbjct: 477 KQQMFENKLIKSEEIKDTILQ 497
>gi|109134336 SH3-domain binding protein 5 (BTK-associated) isoform
a [Homo sapiens]
Length = 455
Score = 36.2 bits (82), Expect = 0.071
Identities = 45/199 (22%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 12 EEAAEEEEGGSYGEEEEEPAIEDVQEETQ-LDLSGDSV-KTIAKLWDSK-----MFAEIM 64
+E EEEEG G EEEE +Q E + L+ S D + + +L D++ + E
Sbjct: 22 DEEEEEEEGMEQGLEEEEEVDPRIQGELEKLNQSTDDINRRETELEDARQKFRSVLVEAT 81
Query: 65 MKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPE 124
+K++E + K KA E ++ P + A +E + K ++ F
Sbjct: 82 VKLDELVKKIGKAVE-----DSKPYWEARRVARQAQLEAQ------------KATQDFQR 124
Query: 125 LESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEEL 184
++ A + I ++ DK + + Q++L +AT V+ + T+ + + +E
Sbjct: 125 ATEVLRAAKETISLAEQRLLEDDKRQFDSAWQEMLNHATQRVMEAEQTKTRSELVHKETA 184
Query: 185 ERLEEACDMALELNASKHR 203
R A +L R
Sbjct: 185 ARYNAAMGRMRQLEKKLKR 203
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 35.8 bits (81), Expect = 0.093
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 6 ELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAK 53
E L++ EE EEEE EEEEE ED + Q D SG S + AK
Sbjct: 296 EQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAK 343
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 35.8 bits (81), Expect = 0.093
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 6 ELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAK 53
E L++ EE EEEE EEEEE ED + Q D SG S + AK
Sbjct: 296 EQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAK 343
>gi|31317305 M-phase phosphoprotein 10 [Homo sapiens]
Length = 681
Score = 35.0 bits (79), Expect = 0.16
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 7 LLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVK--------TIAKLWDSK 58
LL + EE E EE GS E +++ +ED++EE D+ D + + + L S
Sbjct: 106 LLPESEEQ-EREEDGSEIEADDKEDLEDLEEEEVSDMGNDDPEMGERAENSSKSDLRKSP 164
Query: 59 MFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVD 95
+F++ ++ ISK + S+V + P + IVD
Sbjct: 165 VFSDEDSDLDFDISKLEQQSKVQNKGQGKPREKSIVD 201
>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
sapiens]
Length = 1205
Score = 35.0 bits (79), Expect = 0.16
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 20/151 (13%)
Query: 11 LEEAAEEE---EGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKI 67
+ E +EE EG GEEEEE +E+ ++E Q +SG S+K + K SKM + +K
Sbjct: 404 ISETGDEEGLKEGD--GEEEEEEEVEEEEQEAQGGVSG-SLKGVPK--KSKMSLKQKIKK 458
Query: 68 E-EYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELE 126
E E + ++ M V P YR+ + L+ + +N+ + +R
Sbjct: 459 EPEEAGQDTPSTLPMLAVPQIPSYRLNKICSGLSFQRKNQ-----------FMQRLHNYW 507
Query: 127 SLVPNALDYIRTVKELGNSLDKCKNNENLQQ 157
L A + + ++ L + L +N E +Q
Sbjct: 508 LLKRQARNGVPLIRRLHSHLQSQRNAEQREQ 538
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 34.7 bits (78), Expect = 0.21
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 5 DELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIM 64
DE + EE EE+E EEEEE E+ +EE + + + + A +++
Sbjct: 261 DEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAA--------PDVI 312
Query: 65 MKIEEYISKQAKASEVMGPVEAA--PEYRVIVDANN 98
+ + + KA E+ GP + PEY VIV+ +
Sbjct: 313 FQEDTSHTSAQKAPELRGPESPSPKPEYSVIVEVRS 348
>gi|68348702 breast cancer metastasis suppressor 1 isoform 2 [Homo
sapiens]
Length = 290
Score = 34.3 bits (77), Expect = 0.27
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 12 EEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKI-EEY 70
EE +EEE GS E EEE + ++ +E + V + L K F+E+ K+ E
Sbjct: 27 EEESEEERSGSQTESEEESS--EMDDEDYERRRSECVSEMLDL--EKQFSELKEKLFRER 82
Query: 71 ISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHK-----FIRDKY 118
+S+ E +G E APEY + +++I ++ I+K IR+KY
Sbjct: 83 LSQLRLRLEEVG-AERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNKY 134
>gi|17530785 breast cancer metastasis suppressor 1 isoform 1 [Homo
sapiens]
Length = 246
Score = 34.3 bits (77), Expect = 0.27
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 12 EEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMFAEIMMKI-EEY 70
EE +EEE GS E EEE + ++ +E + V + L K F+E+ K+ E
Sbjct: 27 EEESEEERSGSQTESEEESS--EMDDEDYERRRSECVSEMLDL--EKQFSELKEKLFRER 82
Query: 71 ISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHK-----FIRDKY 118
+S+ E +G E APEY + +++I ++ I+K IR+KY
Sbjct: 83 LSQLRLRLEEVG-AERAPEYTEPLGGLQRSLKIRIQVAGIYKGFCLDVIRNKY 134
>gi|169183877 PREDICTED: similar to hCG1742476 [Homo sapiens]
Length = 278
Score = 34.3 bits (77), Expect = 0.27
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 269 PHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKF 328
P G ++HS + + ++ +A KC++A+++D F E G +L++++E +
Sbjct: 7 PKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERL 66
Query: 329 DKWQ 332
++
Sbjct: 67 SFYE 70
>gi|169179771 PREDICTED: similar to hCG1742476 [Homo sapiens]
Length = 278
Score = 34.3 bits (77), Expect = 0.27
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 269 PHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKF 328
P G ++HS + + ++ +A KC++A+++D F E G +L++++E +
Sbjct: 7 PKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERL 66
Query: 329 DKWQ 332
++
Sbjct: 67 SFYE 70
>gi|239743692 PREDICTED: hypothetical protein LOC402360 [Homo
sapiens]
Length = 278
Score = 34.3 bits (77), Expect = 0.27
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 269 PHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKF 328
P G ++HS + + ++ +A KC++A+++D F E G +L++++E +
Sbjct: 7 PKYGLVFHSTFTGQAAARNKGRISQYLANKCSIASQIDCFAEVLMSIFGEKLQEQVEERL 66
Query: 329 DKWQ 332
++
Sbjct: 67 SFYE 70
>gi|157419126 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 34.3 bits (77), Expect = 0.27
Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 7 LLADLEEAAEEEEGGSY-GEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF----- 60
LL+D+EE E+E S G+ ++ +++ + +QL ++ + ++KM
Sbjct: 342 LLSDVEELVEKENQASRKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYYGEE 401
Query: 61 -----AEIMMKI-------EEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELN 108
EI K+ EE S+Q ++ E A E ++ + NE
Sbjct: 402 HELSPKEISEKLVLAQKMLEEIRSRQPFFTQRELVDEEADEAYELLSQAESWQRLHNETR 461
Query: 109 IIHKFIR---DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIM 165
+ + D Y+ + +L+ + AL+Y+R +++ + + + QQ +
Sbjct: 462 TLFPVVLEQLDDYNAKLSDLQEALDQALNYVRDAEDMNRATAARQRDHEKQQERVREQME 521
Query: 166 VVSVTASTTQGQ----QLSEEELER-LEEACDMALELNASKHRI 204
VV+++ ST+ +L+ EL+ ++ A + E++ +K +
Sbjct: 522 VVNMSLSTSADSLTTPRLTLSELDDIIKNASGIYAEIDGAKSEL 565
>gi|157419124 laminin, alpha 4 isoform 1 precursor [Homo sapiens]
Length = 1823
Score = 34.3 bits (77), Expect = 0.27
Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 7 LLADLEEAAEEEEGGSY-GEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF----- 60
LL+D+EE E+E S G+ ++ +++ + +QL ++ + ++KM
Sbjct: 349 LLSDVEELVEKENQASRKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYYGEE 408
Query: 61 -----AEIMMKI-------EEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELN 108
EI K+ EE S+Q ++ E A E ++ + NE
Sbjct: 409 HELSPKEISEKLVLAQKMLEEIRSRQPFFTQRELVDEEADEAYELLSQAESWQRLHNETR 468
Query: 109 IIHKFIR---DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIM 165
+ + D Y+ + +L+ + AL+Y+R +++ + + + QQ +
Sbjct: 469 TLFPVVLEQLDDYNAKLSDLQEALDQALNYVRDAEDMNRATAARQRDHEKQQERVREQME 528
Query: 166 VVSVTASTTQGQ----QLSEEELER-LEEACDMALELNASKHRI 204
VV+++ ST+ +L+ EL+ ++ A + E++ +K +
Sbjct: 529 VVNMSLSTSADSLTTPRLTLSELDDIIKNASGIYAEIDGAKSEL 572
>gi|157419122 laminin, alpha 4 isoform 2 precursor [Homo sapiens]
Length = 1816
Score = 34.3 bits (77), Expect = 0.27
Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 7 LLADLEEAAEEEEGGSY-GEEEEEPAIEDVQEETQLDLSGDSVKTIAKLWDSKMF----- 60
LL+D+EE E+E S G+ ++ +++ + +QL ++ + ++KM
Sbjct: 342 LLSDVEELVEKENQASRKGQLVQKESMDTINHASQLVEQAHDMRDKIQEINNKMLYYGEE 401
Query: 61 -----AEIMMKI-------EEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELN 108
EI K+ EE S+Q ++ E A E ++ + NE
Sbjct: 402 HELSPKEISEKLVLAQKMLEEIRSRQPFFTQRELVDEEADEAYELLSQAESWQRLHNETR 461
Query: 109 IIHKFIR---DKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIM 165
+ + D Y+ + +L+ + AL+Y+R +++ + + + QQ +
Sbjct: 462 TLFPVVLEQLDDYNAKLSDLQEALDQALNYVRDAEDMNRATAARQRDHEKQQERVREQME 521
Query: 166 VVSVTASTTQGQ----QLSEEELER-LEEACDMALELNASKHRI 204
VV+++ ST+ +L+ EL+ ++ A + E++ +K +
Sbjct: 522 VVNMSLSTSADSLTTPRLTLSELDDIIKNASGIYAEIDGAKSEL 565
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 334 PPPVKQ-VKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDL 392
PPP K ++ LP+ L +++KRG ++ ++ K G RK+ + E D Y+E
Sbjct: 90 PPPDKDDIRLLPSALGVKKRKRGPKKQKENKP--GKPRKRKKRDSEEEFGSERDEYREKS 147
Query: 393 GFSLGHLGKSGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGT 448
G +G GR R+ K R K + +K+ GG+ + +SS T
Sbjct: 148 ESGGSEYG-TGPGRKRR------RKHREKKEKKTKRRKKGEGDGGQKQVEQKSSAT 196
Score = 32.0 bits (71), Expect = 1.3
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 5 DELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEE 38
+E++ EE EEEEG EEE E A ED +E+
Sbjct: 13 EEMVVSEEEEEEEEEGDEEEEEEVEAADEDDEED 46
>gi|163644325 MCF.2 cell line derived transforming sequence-like
isoform a [Homo sapiens]
Length = 1182
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 108 NIIHKFIRDKYSKRFPELE-SLVPNALDYI---RTVKELGNSLDKCKNNENLQQILTNAT 163
+I KF RD + + P + S VP+ YI + ++LG +LD C + Q+ +
Sbjct: 205 DIAFKFNRDDFKMKVPVIMLSSVPDLHGYIDKSQLTEDLGGTLDYCHSRWLCQRTAIESF 264
Query: 164 IMVVSVTASTTQ--GQQLSEEEL 184
++V TA Q G +L+E EL
Sbjct: 265 ALMVKQTAQMLQSFGTELAETEL 287
>gi|163644323 MCF.2 cell line derived transforming sequence-like
isoform b [Homo sapiens]
Length = 1129
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 108 NIIHKFIRDKYSKRFPELE-SLVPNALDYI---RTVKELGNSLDKCKNNENLQQILTNAT 163
+I KF RD + + P + S VP+ YI + ++LG +LD C + Q+ +
Sbjct: 152 DIAFKFNRDDFKMKVPVIMLSSVPDLHGYIDKSQLTEDLGGTLDYCHSRWLCQRTAIESF 211
Query: 164 IMVVSVTASTTQ--GQQLSEEEL 184
++V TA Q G +L+E EL
Sbjct: 212 ALMVKQTAQMLQSFGTELAETEL 234
>gi|169210281 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.35
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 8 LADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQL-DLSGDSVKTIAK--------LWDSK 58
L + E E EE GS E + +ED+QEE ++ D+ GD+ + K L S
Sbjct: 27 LGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSP 86
Query: 59 MFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVD 95
+F++ ++ ISK + S+V P + I+D
Sbjct: 87 VFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIID 123
>gi|169210488 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.35
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 8 LADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQL-DLSGDSVKTIAK--------LWDSK 58
L + E E EE GS E + +ED+QEE ++ D+ GD+ + K L S
Sbjct: 27 LGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSP 86
Query: 59 MFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVD 95
+F++ ++ ISK + S+V P + I+D
Sbjct: 87 VFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIID 123
>gi|169210051 PREDICTED: similar to M-phase phosphoprotein 10 (U3
small nucleolar ribonucleoprotein) [Homo sapiens]
Length = 213
Score = 33.9 bits (76), Expect = 0.35
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 9/97 (9%)
Query: 8 LADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQL-DLSGDSVKTIAK--------LWDSK 58
L + E E EE GS E + +ED+QEE ++ D+ GD+ + K L S
Sbjct: 27 LGEESEEQECEEDGSETETGGQEDLEDLQEEEEVSDMGGDNPEVGKKARNSSKFELRKSP 86
Query: 59 MFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVD 95
+F++ ++ ISK + S+V P + I+D
Sbjct: 87 VFSDEDSDLDFDISKLEQQSKVQNTGHGKPREKSIID 123
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 33.9 bits (76), Expect = 0.35
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 21/206 (10%)
Query: 12 EEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVK---------TIAKLWDSKMFAE 62
E EEEEG EEE+E A D EE + G S K T A+ + A+
Sbjct: 524 EGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAK 583
Query: 63 IMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRF 122
K+EE + A E++ + + VE + + + + +K
Sbjct: 584 EEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 643
Query: 123 PEL------ESLVPNALDYIRTVKELGNS-LDKCKNNENLQQILTNATIMVVSVTASTTQ 175
P+ +S VP + V+E G S + K E + + + + A +
Sbjct: 644 PKSPVEEKGKSPVPKS-----PVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGK 698
Query: 176 GQQLSEEELERLEEACDMALELNASK 201
G+Q EEE E E + +E K
Sbjct: 699 GEQKEEEEKEVKEAPKEEKVEKKEEK 724
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 33.9 bits (76), Expect = 0.35
Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 21/206 (10%)
Query: 12 EEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVK---------TIAKLWDSKMFAE 62
E EEEEG EEE+E A D EE + G S K T A+ + A+
Sbjct: 148 EGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGETEAEAEGEEAEAK 207
Query: 63 IMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRF 122
K+EE + A E++ + + VE + + + + +K
Sbjct: 208 EEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKSPVEEKGKSPVPKSPVEEKGKSPV 267
Query: 123 PEL------ESLVPNALDYIRTVKELGNS-LDKCKNNENLQQILTNATIMVVSVTASTTQ 175
P+ +S VP + V+E G S + K E + + + + A +
Sbjct: 268 PKSPVEEKGKSPVPKS-----PVEEKGKSPVSKSPVEEKAKSPVPKSPVEEAKSKAEVGK 322
Query: 176 GQQLSEEELERLEEACDMALELNASK 201
G+Q EEE E E + +E K
Sbjct: 323 GEQKEEEEKEVKEAPKEEKVEKKEEK 348
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,995,308
Number of Sequences: 37866
Number of extensions: 730827
Number of successful extensions: 4545
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 4035
Number of HSP's gapped (non-prelim): 432
length of query: 499
length of database: 18,247,518
effective HSP length: 106
effective length of query: 393
effective length of database: 14,233,722
effective search space: 5593852746
effective search space used: 5593852746
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.