Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 115299760

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|115299760 SCF apoptosis response protein 1 isoform b [Homo
sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|115299756 SCF apoptosis response protein 1 isoform b [Homo sa...   231   7e-62
gi|115299754 SCF apoptosis response protein 1 isoform b [Homo sa...   231   7e-62
gi|115299760 SCF apoptosis response protein 1 isoform b [Homo sa...   231   7e-62
gi|115299762 SCF apoptosis response protein 1 isoform a [Homo sa...   195   7e-51
gi|115299750 SCF apoptosis response protein 1 isoform a [Homo sa...   195   7e-51
gi|115299745 SCF apoptosis response protein 1 isoform a [Homo sa...   195   7e-51
gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens]    79   8e-16
gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]    79   8e-16
gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens]    79   8e-16
gi|110815838 dysbindin (dystrobrevin binding protein 1) domain c...    42   1e-04
gi|110815842 dysbindin (dystrobrevin binding protein 1) domain c...    42   1e-04
gi|16753221 cadherin 22 precursor [Homo sapiens]                       32   0.083
gi|14719400 ADP-ribosylation factor binding protein 3 isoform sh...    30   0.32 
gi|20336267 ADP-ribosylation factor binding protein 3 isoform lo...    30   0.32 
gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...    29   0.71 
gi|45827729 scribble isoform b [Homo sapiens]                          29   0.71 
gi|45827731 scribble isoform a [Homo sapiens]                          29   0.71 
gi|238776840 patatin-like phospholipase domain containing 1 isof...    29   0.92 
gi|224589138 patatin-like phospholipase domain containing 1 isof...    29   0.92 
gi|224593249 patatin-like phospholipase domain containing 1 isof...    29   0.92 
gi|12597625 activating transcription factor 5 [Homo sapiens]           28   1.2  
gi|153251840 zinc finger protein 839 [Homo sapiens]                    28   1.6  
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         28   2.1  
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]            27   2.7  
gi|22779877 connexin 46 [Homo sapiens]                                 27   2.7  
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap...    27   3.5  
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi...    27   3.5  

>gi|115299756 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  231 bits (590), Expect = 7e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112


>gi|115299754 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  231 bits (590), Expect = 7e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112


>gi|115299760 SCF apoptosis response protein 1 isoform b [Homo
           sapiens]
          Length = 112

 Score =  231 bits (590), Expect = 7e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDVRL 112


>gi|115299762 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  195 bits (495), Expect = 7e-51
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109


>gi|115299750 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  195 bits (495), Expect = 7e-51
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109


>gi|115299745 SCF apoptosis response protein 1 isoform a [Homo
           sapiens]
          Length = 161

 Score =  195 bits (495), Expect = 7e-51
 Identities = 97/109 (88%), Positives = 98/109 (89%)

Query: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60
           MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD
Sbjct: 1   MDPNPRAALERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVD 60

Query: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPD 109
           TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGM     + S   P  D
Sbjct: 61  TLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMDNHLEELSLPVPTSD 109


>gi|34304370 dystrobrevin binding protein 1 isoform c [Homo sapiens]
          Length = 270

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 37/69 (53%), Positives = 51/69 (73%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 107 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 166

Query: 72  DPDAADVFL 80
           D +A DVFL
Sbjct: 167 DQEALDVFL 175


>gi|34304368 dystrobrevin binding protein 1 isoform b [Homo sapiens]
          Length = 303

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 37/69 (53%), Positives = 51/69 (73%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 188 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 247

Query: 72  DPDAADVFL 80
           D +A DVFL
Sbjct: 248 DQEALDVFL 256


>gi|19549327 dystrobrevin binding protein 1 isoform a [Homo sapiens]
          Length = 351

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 37/69 (53%), Positives = 51/69 (73%)

Query: 12  QQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELIDLG 71
           QQ++L+ERQKFFE+  Q + E      +L +  +R PIGS+SSMEVNVD LEQ++L+D+ 
Sbjct: 188 QQMKLKERQKFFEEAFQQDMEQYLSTGYLQIAERREPIGSMSSMEVNVDMLEQMDLMDIS 247

Query: 72  DPDAADVFL 80
           D +A DVFL
Sbjct: 248 DQEALDVFL 256


>gi|110815838 dysbindin (dystrobrevin binding protein 1) domain
          containing 1 isoform 1 [Homo sapiens]
          Length = 158

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 40 LHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCED 84
          L +  +R P+ S+SS+EV+ D L+  EL D+ D + A+VF   +D
Sbjct: 53 LQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDD 97


>gi|110815842 dysbindin (dystrobrevin binding protein 1) domain
           containing 1 isoform 2 [Homo sapiens]
          Length = 178

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 40  LHLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCED 84
           L +  +R P+ S+SS+EV+ D L+  EL D+ D + A+VF   +D
Sbjct: 73  LQVTERRQPLSSVSSLEVHFDLLDLTELTDMSDQELAEVFADSDD 117


>gi|16753221 cadherin 22 precursor [Homo sapiens]
          Length = 828

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 9/74 (12%)

Query: 9   LERQQ-----LRLRERQKFFEDILQPETEFVFPLSHLHLESQR----PPIGSISSMEVNV 59
           L+R+Q     LR + R +    +L+PE+EF+  +  ++    R    P IGS++ +    
Sbjct: 125 LDREQKTFYTLRAQARDRATNRLLEPESEFIIKVQDINDSEPRFLHGPYIGSVAELSPTG 184

Query: 60  DTLEQVELIDLGDP 73
            ++ QV   D  DP
Sbjct: 185 TSVMQVMASDADDP 198


>gi|14719400 ADP-ribosylation factor binding protein 3 isoform short
           [Homo sapiens]
          Length = 690

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 51  SISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQP 106
           ++   E N     Q  LIDL + D  +       P PTP SSG+P+      AS P
Sbjct: 277 TLPDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPAPTPPSSGIPILPPPPQASGP 332


>gi|20336267 ADP-ribosylation factor binding protein 3 isoform long
           [Homo sapiens]
          Length = 723

 Score = 30.4 bits (67), Expect = 0.32
 Identities = 19/56 (33%), Positives = 25/56 (44%)

Query: 51  SISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQP 106
           ++   E N     Q  LIDL + D  +       P PTP SSG+P+      AS P
Sbjct: 310 TLPDSEGNSQCSNQGTLIDLAELDTTNSLSSVLAPAPTPPSSGIPILPPPPQASGP 365


>gi|5174467 heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3B1
           [Homo sapiens]
          Length = 390

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 73  PDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEPDV 110
           PD     LP   PP TP +SG  +  G  S  +  P+V
Sbjct: 81  PDGTPPRLPFRAPPATPLASGKEMAEGAASPEEQSPEV 118


>gi|45827729 scribble isoform b [Homo sapiens]
          Length = 1630

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 3    PNPRAALERQQLRLRERQKFFE-DILQPETE 32
            P P  A   +QL  RERQK+FE ++  P+ E
Sbjct: 1341 PTPGPAASPEQLSFRERQKYFELEVRVPQAE 1371


>gi|45827731 scribble isoform a [Homo sapiens]
          Length = 1655

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 3    PNPRAALERQQLRLRERQKFFE-DILQPETE 32
            P P  A   +QL  RERQK+FE ++  P+ E
Sbjct: 1341 PTPGPAASPEQLSFRERQKYFELEVRVPQAE 1371


>gi|238776840 patatin-like phospholipase domain containing 1 isoform
           3 [Homo sapiens]
          Length = 532

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 10  ERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELID 69
           ER Q  LR RQ   E   QP  E+V P       S  PP+         V TLE      
Sbjct: 291 ERSQPSLRARQASLEGATQPHKEWV-PKGDGR-GSHGPPVSQ------PVQTLE----FT 338

Query: 70  LGDPDAADVFLPCEDPPPTPQSSGMPL 96
              P +A V  P E PP  P +S  PL
Sbjct: 339 CESPVSAPVS-PLEQPPAQPLASSTPL 364


>gi|224589138 patatin-like phospholipase domain containing 1 isoform
           2 [Homo sapiens]
          Length = 446

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 10  ERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELID 69
           ER Q  LR RQ   E   QP  E+V P       S  PP+         V TLE      
Sbjct: 205 ERSQPSLRARQASLEGATQPHKEWV-PKGDGR-GSHGPPVSQ------PVQTLE----FT 252

Query: 70  LGDPDAADVFLPCEDPPPTPQSSGMPL 96
              P +A V  P E PP  P +S  PL
Sbjct: 253 CESPVSAPVS-PLEQPPAQPLASSTPL 278


>gi|224593249 patatin-like phospholipase domain containing 1 isoform
           1 [Homo sapiens]
          Length = 437

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 31/87 (35%), Positives = 35/87 (40%), Gaps = 13/87 (14%)

Query: 10  ERQQLRLRERQKFFEDILQPETEFVFPLSHLHLESQRPPIGSISSMEVNVDTLEQVELID 69
           ER Q  LR RQ   E   QP  E+V P       S  PP+         V TLE      
Sbjct: 196 ERSQPSLRARQASLEGATQPHKEWV-PKGDGR-GSHGPPVSQ------PVQTLE----FT 243

Query: 70  LGDPDAADVFLPCEDPPPTPQSSGMPL 96
              P +A V  P E PP  P +S  PL
Sbjct: 244 CESPVSAPVS-PLEQPPAQPLASSTPL 269


>gi|12597625 activating transcription factor 5 [Homo sapiens]
          Length = 282

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 16/45 (35%), Positives = 19/45 (42%)

Query: 62  LEQVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQP 106
           LEQ+E   L  P       P   PPP P +  +PL    F   QP
Sbjct: 109 LEQMEDFFLDAPPLPPPSPPPLPPPPLPPAPSLPLSLPSFDLPQP 153


>gi|153251840 zinc finger protein 839 [Homo sapiens]
          Length = 927

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 41  HLESQRPPIGSISSMEVNVDTLEQVELIDLGDPDAADVFLPCEDPPPTPQSS 92
           HL  Q+P   S+   EV    LE++  +D    D A   +P   P P P  S
Sbjct: 779 HLNHQQPSPTSVLPTEVAAPPLEKILSVDSVAVDCAYRTVPKPGPQPGPHGS 830


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 64  QVELIDLGDPDAADVFLPCEDPPPTPQSSGMPLCFGDFSASQPEP 108
           Q EL +  +P A DV L   +PP  PQ   +P       +S+P P
Sbjct: 240 QEELCEAQEPKARDVPLEMAEPPDPPQELPIP-------SSEPPP 277


>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 292

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 81  PCEDPPPTPQSSGMPLCFGDFSASQPEP 108
           P   PPP   S   PLC G    + PEP
Sbjct: 42  PDHAPPPGRPSCSRPLCAGSSCLATPEP 69


>gi|239753324 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 81  PCEDPPPTPQSSGMPLCFGDFSASQPEP 108
           P   PPP   S   PLC G    + PEP
Sbjct: 62  PDHAPPPGRPSCSRPLCAGSSCLATPEP 89


>gi|169218002 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 218

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 81  PCEDPPPTPQSSGMPLCFGDFSASQPEP 108
           P   PPP   S   PLC G    + PEP
Sbjct: 35  PDHAPPPGRPSCSRPLCAGSSCLATPEP 62


>gi|169163057 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 245

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 81  PCEDPPPTPQSSGMPLCFGDFSASQPEP 108
           P   PPP   S   PLC G    + PEP
Sbjct: 62  PDHAPPPGRPSCSRPLCAGSSCLATPEP 89


>gi|22779877 connexin 46 [Homo sapiens]
          Length = 435

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 73  PDAADVFLPCEDPPPTPQSSGMP 95
           PDA++  L   DPPP P SS  P
Sbjct: 240 PDASEAPLGTADPPPLPPSSRPP 262


>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
           sapiens]
          Length = 603

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 9   LERQQLRLRERQKFFEDILQPETE 32
           L+ QQ RLRER+K  + + +P+++
Sbjct: 342 LQEQQERLREREKRLQQLAEPQSD 365


>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
           sapiens]
          Length = 603

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 9   LERQQLRLRERQKFFEDILQPETE 32
           L+ QQ RLRER+K  + + +P+++
Sbjct: 342 LQEQQERLREREKRLQQLAEPQSD 365


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,720,749
Number of Sequences: 37866
Number of extensions: 273471
Number of successful extensions: 1100
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 57
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press