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Search of human proteins with 219273466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219273466 hypothetical protein LOC29125 [Homo sapiens]
(178 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219273466 hypothetical protein LOC29125 [Homo sapiens] 390 e-109
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 37 0.007
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 37 0.007
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 37 0.009
gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo s... 37 0.012
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens] 35 0.026
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 35 0.026
gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo sa... 35 0.034
gi|56118221 amyloid beta (A4) precursor protein-binding, family ... 35 0.034
gi|239752681 PREDICTED: hypothetical protein [Homo sapiens] 35 0.044
gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo sap... 34 0.076
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 34 0.076
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 33 0.099
gi|38505290 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505288 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505286 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505282 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505278 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505272 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|38505268 voltage-dependent calcium channel alpha 1G subunit i... 33 0.13
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi... 33 0.17
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 33 0.17
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 32 0.22
gi|7705375 zinc finger and BTB domain containing 7A [Homo sapiens] 32 0.22
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 32 0.29
gi|20070163 voltage-dependent calcium channel alpha 1G subunit i... 32 0.38
gi|239753543 PREDICTED: similar to hCG2041108 [Homo sapiens] 32 0.38
gi|239748119 PREDICTED: similar to hCG2041108 [Homo sapiens] 32 0.38
gi|239742018 PREDICTED: similar to hCG2041108 [Homo sapiens] 32 0.38
gi|4557595 forkhead box F2 [Homo sapiens] 32 0.38
>gi|219273466 hypothetical protein LOC29125 [Homo sapiens]
Length = 178
Score = 390 bits (1001), Expect = e-109
Identities = 178/178 (100%), Positives = 178/178 (100%)
Query: 1 MASFLVWPLRTALRGGKSWAGPGVGCGGDGARGGGELSLSNLDLPGAGEAGLEHHPLLGH 60
MASFLVWPLRTALRGGKSWAGPGVGCGGDGARGGGELSLSNLDLPGAGEAGLEHHPLLGH
Sbjct: 1 MASFLVWPLRTALRGGKSWAGPGVGCGGDGARGGGELSLSNLDLPGAGEAGLEHHPLLGH 60
Query: 61 LFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPAT 120
LFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPAT
Sbjct: 61 LFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPAT 120
Query: 121 AHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQPLPS 178
AHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQPLPS
Sbjct: 121 AHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQPLPS 178
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 37.4 bits (85), Expect = 0.007
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 14 RGGKSWAGPGVGCGGDGARG-------GGELSLSNLD-------LPGA-GEAGLEHHPLL 58
RG AGP G +GARG G+ L +D +PG GE G P
Sbjct: 507 RGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPP-- 564
Query: 59 GHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSR--DQEAPGSMMPPAAAQPSAHGALV 116
G + +P P + GV TG PG P + + PG PP P L
Sbjct: 565 GDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP 624
Query: 117 PPATAHEPVDHPAL 130
PV P L
Sbjct: 625 GSRGELGPVGSPGL 638
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 37.4 bits (85), Expect = 0.007
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 19/134 (14%)
Query: 14 RGGKSWAGPGVGCGGDGARG-------GGELSLSNLD-------LPGA-GEAGLEHHPLL 58
RG AGP G +GARG G+ L +D +PG GE G P
Sbjct: 264 RGPPGEAGPKGDRGAEGARGIPGLPGPKGDTGLPGVDGRDGIPGMPGTKGEPGKPGPP-- 321
Query: 59 GHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSR--DQEAPGSMMPPAAAQPSAHGALV 116
G + +P P + GV TG PG P + + PG PP P L
Sbjct: 322 GDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLP 381
Query: 117 PPATAHEPVDHPAL 130
PV P L
Sbjct: 382 GSRGELGPVGSPGL 395
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 37.0 bits (84), Expect = 0.009
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 25 GCGGDGARGGGELSLSNLDLPGAGEAGLEHHPLLGHLFISAVPRWPHLSSQSGVEPPDRW 84
G GG G+ GGG S SN G AG ++ ++ P LSS G +
Sbjct: 397 GGGGGGSGGGGSSSSSNSS--AGGGAGKQNGATSYSSVVADSPAEVALSSSGGNNASSQA 454
Query: 85 TGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVP 117
G P P P + P+AA P+ G + P
Sbjct: 455 LGPPSGP--HNPPPSTSKEPSAAAPTGAGGVAP 485
Score = 28.9 bits (63), Expect = 2.4
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 75 QSGVEPPDRWTGTPGWPSRDQEAPGSMMPPA-AAQPSAHGALVPPATAH 122
QS PP +G P S PG+ PA AA PSA G PA +H
Sbjct: 315 QSPAVPPTYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSH 363
>gi|169217788 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 36.6 bits (83), Expect = 0.012
Identities = 35/119 (29%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 56 PLLGHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGAL 115
P G L PRWP +S + + G PG + Q PG PA A+P G L
Sbjct: 246 PPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQ--PG----PAQARPQGQGVL 299
Query: 116 VPPATAHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQ 174
PA+ P W GQ P R W+ A P P A WQ
Sbjct: 300 AIPASQGSP-------WWGW-------GQGPQVARAAWEPQAGAAPPRQPAPPEASAWQ 344
>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
Length = 709
Score = 35.4 bits (80), Expect = 0.026
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 80 PPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPA 129
PP W G P +P +Q A P AH PP + H PV H A
Sbjct: 583 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAH----PPYSGHHPVPHEA 628
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 35.4 bits (80), Expect = 0.026
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 80 PPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPA 129
PP W G P +P +Q A P AH PP + H PV H A
Sbjct: 601 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAH----PPYSGHHPVPHEA 646
>gi|89062404 PREDICTED: similar to putative DUX4 protein [Homo
sapiens]
Length = 422
Score = 35.0 bits (79), Expect = 0.034
Identities = 34/119 (28%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 56 PLLGHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGAL 115
P G L PRWP +S + + G PG + Q PG PA A+P G L
Sbjct: 246 PPEGALSHPQAPRWPAHPGKSREDRELQLDGLPGPCTVGQ--PG----PAQARPQGQGVL 299
Query: 116 VPPATAHEPVDHPALHWLACCCCLSLPGQLPLAIRLGWDLDLEAGPSSGKLCPRARRWQ 174
PA+ P W G+ P R W+ A P P A WQ
Sbjct: 300 AIPASQGSP-------WWGW-------GRGPQVARAAWEPQAGAAPPRQPAPPEASAWQ 344
>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
member 1 interacting protein [Homo sapiens]
Length = 666
Score = 35.0 bits (79), Expect = 0.034
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 49 EAGLEHHPLLGHLFISAVPRWPHLSSQSGVEPPD--RWTGTPGWPSRDQEAPGSMMPPAA 106
E + P LG+ AVPR PH S PP R + T G P+ +A G+
Sbjct: 488 ETSKDKKPALGNHHDPAVPRAPHAPKSSLPPPPPVRRSSDTSGSPATPLKAKGT---GGG 544
Query: 107 AQPSAHGALVPPATAHEPVDHPAL 130
P+ +PP P+D P L
Sbjct: 545 GLPAPPDDFLPPPPPPPPLDDPEL 568
>gi|239752681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 286
Score = 34.7 bits (78), Expect = 0.044
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 43 DLPGAGEAGLEHHPLLGHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMM 102
D PG A ++ L IS P+ P LS + PP +G+P P+ G++
Sbjct: 34 DHPGGAPALSDNGALSPPRAISGSPQNPTLSGNGALSPPRAISGSPQNPT--LSGNGALS 91
Query: 103 PPAAAQP-------SAHGALVPPATAHEPVDHPAL 130
PP A S +GAL PP +P L
Sbjct: 92 PPRAISGSPQNPTLSGNGALSPPRAISGSPQNPTL 126
>gi|169211815 PREDICTED: keratin associated protein 4.6 [Homo
sapiens]
Length = 288
Score = 33.9 bits (76), Expect = 0.076
Identities = 30/97 (30%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPALHWLACCCCLS 140
P T W R AP ++ PPAA P+A A V PA A D A A +
Sbjct: 87 PSALTRAVAW--RPAAAPAAVRPPAAGPPAAAPAAVCPAAA----DPSAASLCAASPPAA 140
Query: 141 LPGQLPLAIR----------LGWDLDLEAGPSSGKLC 167
+P +P A+R L A PS+ LC
Sbjct: 141 VPAAVPAAVRPPAAGPPAAALAAVYPAAADPSAASLC 177
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 33.9 bits (76), Expect = 0.076
Identities = 27/91 (29%), Positives = 33/91 (36%), Gaps = 2/91 (2%)
Query: 35 GELSLSNLDLPGAGEAGLEHHPLLGHLFISAVPRWPHLSSQSGVE-PPDRWTGTPGWPSR 93
G +S L PG+ + H P +G A PR S PP RW P S
Sbjct: 1878 GGVSFGPLPSPGSPSSLTHHIPTVGDPDFPAPPRRSRRPSPLAPRPPPSRWASPPLKTSP 1937
Query: 94 DQEAPGSMMPPAAAQPSAHGALVPPATAHEP 124
P A P++ G L PP A P
Sbjct: 1938 QLRVPPPTSVVTALTPTS-GELAPPGPAPSP 1967
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 33.5 bits (75), Expect = 0.099
Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 23/106 (21%)
Query: 47 AGEAGLEHHPLLGHLFISAVPRWPHLSSQSGVEPPDRWTGTPGWPSR------DQEAPGS 100
A A ++ P+LG S V HL S S P WT +P P + + +AP +
Sbjct: 900 AAAASIKSPPVLGSAAASPV----HLKSPSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLT 955
Query: 101 MMPPAAAQPSAHGALVPPATAHEPVDHPALHWLACCCCLSLPGQLP 146
M PA G PP TA +P +++PG LP
Sbjct: 956 MASPAMLGNVESGG-PPPPTASQPAS------------VNIPGSLP 988
>gi|38505290 voltage-dependent calcium channel alpha 1G subunit
isoform 13 [Homo sapiens]
Length = 2243
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1848 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1895
>gi|38505288 voltage-dependent calcium channel alpha 1G subunit
isoform 12 [Homo sapiens]
Length = 2250
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1855 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1902
>gi|38505286 voltage-dependent calcium channel alpha 1G subunit
isoform 10 [Homo sapiens]
Length = 2266
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1871 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1918
>gi|38505282 voltage-dependent calcium channel alpha 1G subunit
isoform 8 [Homo sapiens]
Length = 2284
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1889 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1936
>gi|38505278 voltage-dependent calcium channel alpha 1G subunit
isoform 11 [Homo sapiens]
Length = 2261
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1866 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1913
>gi|38505272 voltage-dependent calcium channel alpha 1G subunit
isoform 9 [Homo sapiens]
Length = 2273
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1878 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1925
>gi|38505268 voltage-dependent calcium channel alpha 1G subunit
isoform 14 [Homo sapiens]
Length = 2171
Score = 33.1 bits (74), Expect = 0.13
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHP 128
P W G G S D PG++ P A A+ ++H +L P P + P
Sbjct: 1855 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSLEHPTMQPHPTELP 1902
>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
sapiens]
Length = 422
Score = 32.7 bits (73), Expect = 0.17
Identities = 31/109 (28%), Positives = 40/109 (36%), Gaps = 16/109 (14%)
Query: 27 GGDGARGGGELSLSNLDLPGAGEAGLEHHPLLGHLFISAVPRWPHLSSQSGVEPPD--RW 84
G G++G + + E + P L H F A P P + + P RW
Sbjct: 205 GAFGSQGARAVPVLXPSQAAPAEGISQPAPALKH-FAYAAPAPP----EGALSHPQATRW 259
Query: 85 TGTPG--WPSRDQEAPGSMMP-------PAAAQPSAHGALVPPATAHEP 124
PG W RD + G P PA A P G L PPA+ P
Sbjct: 260 PPHPGKSWEDRDPQRDGLSGPCAVGQPGPAQAVPHGQGVLAPPASQWSP 308
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 32.7 bits (73), Expect = 0.17
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 13/129 (10%)
Query: 15 GGKSWAGPGVGCGGDGARGGGELSLSNLDLPGAGEAGLEHH---PLLGHLFISAVPR--- 68
GG G G GG G GGG + GE L H L H I+ R
Sbjct: 3507 GGGGGGSGGGGGGGGGGGGGGSYHCLACESALCGEEALSQHLESALHKHRTITRAARNAK 3566
Query: 69 -WPHLSSQSGV--EPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAH----GALVPPATA 121
P L S +P T S D P S P++A P A +V A+A
Sbjct: 3567 EHPSLLPHSACFPDPSTASTSQSAAHSNDSPPPPSAAAPSSASPHASRKSWPQVVSRASA 3626
Query: 122 HEPVDHPAL 130
+P P L
Sbjct: 3627 AKPPSFPPL 3635
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 32.3 bits (72), Expect = 0.22
Identities = 38/132 (28%), Positives = 48/132 (36%), Gaps = 25/132 (18%)
Query: 10 RTALRGGKSWAGPGVGCG-----GDGARGGGELSLSNLDLPGAGEAGLEHHPLLGHLFIS 64
R++ G GP G G GD R G SL++L G G G GHL S
Sbjct: 68 RSSALGAADSEGPARGAGKSSTNGDCRRFRG--SLASLGSRGGGSGGTGSGSSHGHLHDS 125
Query: 65 AVPRWPHLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEP 124
A R L ++ P + D+ PG AA+P GA PA + P
Sbjct: 126 AEER--RLIAEGDASPGE-----------DRTPPG-----LAAEPERPGASAQPAASPPP 167
Query: 125 VDHPALHWLACC 136
P A C
Sbjct: 168 PQQPPQPASASC 179
>gi|7705375 zinc finger and BTB domain containing 7A [Homo sapiens]
Length = 584
Score = 32.3 bits (72), Expect = 0.22
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 82 DRWTGTPG-WPSRDQEAP-GSMMPPAAAQPSA 111
D PG WP RD++AP G + PP A P+A
Sbjct: 235 DEGDSNPGLWPERDEDAPTGGLFPPPVAPPAA 266
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 32.0 bits (71), Expect = 0.29
Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 14/96 (14%)
Query: 27 GGDGARGGGELSLSNLDLPGAGEAGLEHHP-LLGHLFISAVPRWPHLSSQSGVEPPDRWT 85
G GA G L G G + H P LGH+ S V R P PP++WT
Sbjct: 796 GNHGATNQGPLGPDEKPHLGPGPS---HQPRTLGHVMDSRVMRPP--------VPPNQWT 844
Query: 86 GTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATA 121
G+ + G M PP + + H PP A
Sbjct: 845 EQSGFLPHGVPSSGYMRPP--CKSAGHRLQPPPVPA 878
>gi|20070163 voltage-dependent calcium channel alpha 1G subunit
isoform 1 [Homo sapiens]
Length = 2377
Score = 31.6 bits (70), Expect = 0.38
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 81 PDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPALHWLACCCCLS 140
P W G G S D PG++ P A A+ ++H +L +HP L L
Sbjct: 1889 PFLWPGVEGPDSPDSPKPGALHPAAHARSASHFSL----------EHPTDRQLFDTISLL 1938
Query: 141 LPGQLPLAIRLGWDLDLEAGP 161
+ G L ++L +D AGP
Sbjct: 1939 IQGSLEWELKL---MDELAGP 1956
>gi|239753543 PREDICTED: similar to hCG2041108 [Homo sapiens]
Length = 299
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 47 AGEAGLEHHPLLGHLFISAVPRWP--HLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPP 104
AG G + L LF SA+P P SG EPP G PG P+ Q ++ P
Sbjct: 27 AGRVGAQGGVAL--LFPSALPSGPGGQDPGASGWEPPP--VGAPGSPAAPQSRGNAVRPA 82
Query: 105 AAAQPSAHGALVPPATAHEPVDHPALHW 132
+ PSA G T P W
Sbjct: 83 SVLLPSACGQRTSRITGGLPAPDRKWPW 110
>gi|239748119 PREDICTED: similar to hCG2041108 [Homo sapiens]
Length = 299
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 47 AGEAGLEHHPLLGHLFISAVPRWP--HLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPP 104
AG G + L LF SA+P P SG EPP G PG P+ Q ++ P
Sbjct: 27 AGRVGAQGGVAL--LFPSALPSGPGGQDPGASGWEPPP--VGAPGSPAAPQSRGNAVRPA 82
Query: 105 AAAQPSAHGALVPPATAHEPVDHPALHW 132
+ PSA G T P W
Sbjct: 83 SVLLPSACGQRTSRITGGLPAPDRKWPW 110
>gi|239742018 PREDICTED: similar to hCG2041108 [Homo sapiens]
Length = 299
Score = 31.6 bits (70), Expect = 0.38
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 47 AGEAGLEHHPLLGHLFISAVPRWP--HLSSQSGVEPPDRWTGTPGWPSRDQEAPGSMMPP 104
AG G + L LF SA+P P SG EPP G PG P+ Q ++ P
Sbjct: 27 AGRVGAQGGVAL--LFPSALPSGPGGQDPGASGWEPPP--VGAPGSPAAPQSRGNAVRPA 82
Query: 105 AAAQPSAHGALVPPATAHEPVDHPALHW 132
+ PSA G T P W
Sbjct: 83 SVLLPSACGQRTSRITGGLPAPDRKWPW 110
>gi|4557595 forkhead box F2 [Homo sapiens]
Length = 444
Score = 31.6 bits (70), Expect = 0.38
Identities = 33/132 (25%), Positives = 42/132 (31%), Gaps = 28/132 (21%)
Query: 24 VGCGGDGARGGGELSLSNLDL-PGAGEAGLEHHPLLGHLFISAVPRWPHLSSQSG----- 77
+GC G GG ++ + D GA HH H+ PH+S G
Sbjct: 235 LGCHSQGGYGGLDMMPAGYDAGAGAPSHAHPHHHHHHHV--------PHMSPNPGSTYMA 286
Query: 78 ---VEPPDRWTGTPGWPSRDQEAPGSMMPPAAAQPSAHGALVPPATAHEPVDHPALHWLA 134
V G G P S P + P+ A+ H P PA HW
Sbjct: 287 SCPVPAGPGGVGAAGGGGGGDYGPDSSSSPVPSSPAMASAI----ECHSPYTSPAAHW-- 340
Query: 135 CCCCLSLPGQLP 146
S PG P
Sbjct: 341 -----SSPGASP 347
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.139 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,960,408
Number of Sequences: 37866
Number of extensions: 573668
Number of successful extensions: 4044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 3671
Number of HSP's gapped (non-prelim): 520
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.