Guide to the Human Genome
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Name: LOC729756 Sequence: fasta or formatted (299aa) NCBI GI: 239753543
Description:

PREDICTED: similar to hCG2041108

Not currently referenced in the text

Other entries for this name:
alt mRNA {299aa} PREDICTED: similar to hCG2041108
alt mRNA {299aa} PREDICTED: similar to hCG2041108
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         25           2
 C cysteine            3.0          9           1
 D aspartate           3.3         10           1
 E glutamate           4.7         14           2
 F phenylalanine       1.7          5           1
 G glycine            10.7         32           2
 H histidine           3.0          9           2
 I isoleucine          5.0         15           2
 K lysine              3.7         11           2
 L leucine             9.4         28           3
 M methionine          1.3          4           1
 N asparagine          3.3         10           1
 P proline             7.7         23           3
 Q glutamine           4.7         14           1
 R arginine            4.7         14           1
 S serine              8.4         25           2
 T threonine           4.7         14           1
 V valine              8.0         24           2
 W tryptophan          3.0          9           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2041108 
LOC729756             1.000   PREDICTED: similar to hCG2041108 
LOC729756             1.000   PREDICTED: similar to hCG2041108 
TESSP2                0.336   testis serine protease 2 
LOC100293486          0.319   PREDICTED: similar to hCG2041452 
LOC100291379          0.319   PREDICTED: hypothetical protein XP_002346556 
LOC100288960          0.319   PREDICTED: hypothetical protein XP_002342392 
TMPRSS6               0.176   transmembrane protease, serine 6 
KLKB1                 0.171   plasma kallikrein B1 precursor 
PRSS8                 0.167   prostasin preproprotein 
PRSS27                0.164   marapsin 
CELA2A                0.161   elastase 2A preproprotein 
PRSS21                0.157   testisin isoform 2 
CELA2B                0.157   elastase 2B preproprotein 
TMPRSS13              0.157   transmembrane protease, serine 13 
PRSS21                0.157   testisin isoform 1 
TESSP1                0.156   testis-specific serine protease 1 
F11                   0.154   coagulation factor XI precursor 
PRSS33                0.154   protease, serine, 33 
OVCH1                 0.147   ovochymase 1 
TMPRSS12              0.145   transmembrane protease, serine 12 
CTRC                  0.144   chymotrypsin C preproprotein 
TPSG1                 0.142   transmembrane tryptase preproprotein 
PRSS21                0.142   testisin isoform 3 
TMPRSS11D             0.142   transmembrane protease, serine 11D 
TPSB2                 0.142   tryptase beta 2 precursor 
PRSS7                 0.139   enterokinase precursor 
OVCH2                 0.139   ovochymase 2 
MPN2                  0.139   marapsin 2 
ESSPL                 0.139   epidermis-specific serine protease-like protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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