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Search of human proteins with 21914927
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21914927 helicase, lymphoid-specific [Homo sapiens]
(838 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 1667 0.0
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 382 e-106
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 382 e-106
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 379 e-105
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 379 e-105
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 370 e-102
gi|29244924 chromodomain helicase DNA binding protein 6 [Homo sa... 366 e-101
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 357 3e-98
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 350 3e-96
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 348 1e-95
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 337 4e-92
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 337 4e-92
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 337 4e-92
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 307 3e-83
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 290 4e-78
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 290 4e-78
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 290 4e-78
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 289 9e-78
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 269 9e-72
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 256 8e-68
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 255 1e-67
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 255 1e-67
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 247 4e-65
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 229 8e-60
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 228 2e-59
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 1667 bits (4316), Expect = 0.0
Identities = 838/838 (100%), Positives = 838/838 (100%)
Query: 1 MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRES 60
MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRES
Sbjct: 1 MPAERPAGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRES 60
Query: 61 TEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASE 120
TEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASE
Sbjct: 61 TEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASE 120
Query: 121 EKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSN 180
EKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSN
Sbjct: 121 EKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSN 180
Query: 181 SIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN 240
SIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN
Sbjct: 181 SIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWEN 240
Query: 241 GINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTM 300
GINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTM
Sbjct: 241 GINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTM 300
Query: 301 LYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
LYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK
Sbjct: 301 LYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
Query: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSL 420
NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSL
Sbjct: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSL 420
Query: 421 SETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 480
SETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFY
Sbjct: 421 SETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 480
Query: 481 TAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVD 540
TAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVD
Sbjct: 481 TAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVD 540
Query: 541 RERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGK 600
RERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGK
Sbjct: 541 RERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGK 600
Query: 601 FLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHS 660
FLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHS
Sbjct: 601 FLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHS 660
Query: 661 FNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
FNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY
Sbjct: 661 FNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVY 720
Query: 721 RLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY 780
RLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY
Sbjct: 721 RLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY 780
Query: 781 EREIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPECLF 838
EREIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPECLF
Sbjct: 781 EREIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILENSEDSSPECLF 838
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 382 bits (982), Expect = e-106
Identities = 267/801 (33%), Positives = 405/801 (50%), Gaps = 129/801 (16%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + +RL +LL++
Sbjct: 497 IQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQ 556
Query: 75 SNIYSKFLLTKMEQQ---QLEEQKKKEKLERKKES------------------------- 106
++ Y L + Q Q+ ++KKK+K ++K E+
Sbjct: 557 TDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDETSQMSDLP 616
Query: 107 ---LKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENS 163
+ V+ GK K + + Y ++ EE S ++ ++E E +
Sbjct: 617 VKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEEQPQA 676
Query: 164 SST-NLCVEDLQKNKDSNSIIKDRLSET----VRQNTKFFFDP----------------- 201
+ L VE+ +K D +S D +SE + +N K D
Sbjct: 677 AQPPTLPVEEKKKIPDPDS---DDVSEVDARHIIENAKQDVDDEYGVSQALARGLQSYYA 733
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIAT 261
V + V +Q GV++ YQ++G+EWL L+ N +NGILADEMGLGKT+Q IA
Sbjct: 734 VAHAVTERVD-KQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL 792
Query: 262 IA-LMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRK 320
I LM + + GPFL+ PLSTL NW EF ++ P + + Y G+ R+ V + R
Sbjct: 793 ITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVPQL--RS 850
Query: 321 GTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKL 379
G V++T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A +L
Sbjct: 851 GKFN---VLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 380 LLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLH 438
LLTGTPLQN L ELW+LLNFLLP +F +FE WF+ + T E + E E ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGEKVDLNEEETILIIR 966
Query: 439 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKE 498
LH++L PFLLRRLK +V ++P K E V+ +S Q + Y + + + GS + +
Sbjct: 967 RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK 1026
Query: 499 TIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNL 558
+ K T+ +N
Sbjct: 1027 --------KGKGGTKTLMN----------------------------------------- 1037
Query: 559 KLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN------SGKFLILDRMLPELK 612
+M LRK CNHPY+ ++ + ++ +V SGKF +LDR+LP+L+
Sbjct: 1038 ----TIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLR 1093
Query: 613 KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFL 671
HKVLLF QMTS++ I+ DY R F + RLDG+ +R + +FN E FIFL
Sbjct: 1094 ATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFL 1153
Query: 672 VSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQK 731
+STRAGGLG+NL +ADTVII+DSDWNP DLQAQDR HRIGQ V V RL T N++++K
Sbjct: 1154 LSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEK 1213
Query: 732 IVERAAAKRKLEKLIIHKNHF 752
I+ A K +++ +I F
Sbjct: 1214 ILAAAKYKLNVDQKVIQAGMF 1234
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 379 bits (974), Expect = e-105
Identities = 261/792 (32%), Positives = 398/792 (50%), Gaps = 117/792 (14%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + RRL +LL++
Sbjct: 473 IQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQ 532
Query: 75 SNIYSKFLLTKM---EQQQLEEQKKKEKLERKKESLKVKKGKNS-------IDASEEKP- 123
++ Y L + +Q Q ++KKK + +KK + G+++ ID S +
Sbjct: 533 TDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSD 592
Query: 124 ----VMRKKRGRE------------------DESYNISEVMSKEEILSVAKKNKKENEDE 161
V + G+ + Y ++ EE S ++ +E E
Sbjct: 593 LPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESS 652
Query: 162 NSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPF--------- 212
+ + D + S K ++ ET +Q+ + G +
Sbjct: 653 RQETEEKILLDPNSEEVSEKDAK-QIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISER 711
Query: 213 --QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269
+Q G ++ YQ++G+EW+ L+ N +NGILADEMGLGKT+Q IA I LM +
Sbjct: 712 VEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
Query: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVV 329
+ GP+L+ PLSTL NW EF ++ P + + Y GT R+ LV + R G V+
Sbjct: 772 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQL--RSGKFN---VL 826
Query: 330 ITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKLLLTGTPLQN 388
+T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A ++LLTGTPLQN
Sbjct: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
Query: 389 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLHMLHQILTPF 447
L ELW+LLNFLLP +F +FE WF+ + T E + E E ++ LH++L PF
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPF 945
Query: 448 LLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGR 507
LLRRLK +V ++P K E V+ +S Q+I Y + + I GS E G+
Sbjct: 946 LLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGS------EKDKKGK 999
Query: 508 PKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLL 567
+T L I Q++
Sbjct: 1000 GGAKT---------------LMNTIMQLR------------------------------- 1013
Query: 568 RKCCNHPYLIEYPIDPVTQEFKIDE------ELVTNSGKFLILDRMLPELKKRGHKVLLF 621
K CNHPY+ ++ + + EL SGKF +LDR+LP+L+ H+VLLF
Sbjct: 1014 -KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
Query: 622 SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFLVSTRAGGLG 680
QMTS++ I+ DY R+F + RLDG+ +R + FN + FIFL+STRAGGLG
Sbjct: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
Query: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
+NL AADTV+I+DSDWNP DLQAQDR HRIGQ V V RL T N++++KI+ A K
Sbjct: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
Query: 741 KLEKLIIHKNHF 752
+++ +I F
Sbjct: 1193 NVDQKVIQAGMF 1204
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 379 bits (974), Expect = e-105
Identities = 261/792 (32%), Positives = 398/792 (50%), Gaps = 117/792 (14%)
Query: 18 VEQLDTAVIT-PAMLEEEEQLEAAGLERER--KMLEKARMSWDRESTEIRYRRLQHLLEK 74
+++L AV T A E E++ E +E+ER +++ + + + + + RRL +LL++
Sbjct: 473 IQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQKKDRRLAYLLQQ 532
Query: 75 SNIYSKFLLTKM---EQQQLEEQKKKEKLERKKESLKVKKGKNS-------IDASEEKP- 123
++ Y L + +Q Q ++KKK + +KK + G+++ ID S +
Sbjct: 533 TDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGEPIDESSQMSD 592
Query: 124 ----VMRKKRGRE------------------DESYNISEVMSKEEILSVAKKNKKENEDE 161
V + G+ + Y ++ EE S ++ +E E
Sbjct: 593 LPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEESDSDYEEEDEEEESS 652
Query: 162 NSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPF--------- 212
+ + D + S K ++ ET +Q+ + G +
Sbjct: 653 RQETEEKILLDPNSEEVSEKDAK-QIIETAKQDVDDEYSMQYSARGSQSYYTVAHAISER 711
Query: 213 --QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269
+Q G ++ YQ++G+EW+ L+ N +NGILADEMGLGKT+Q IA I LM +
Sbjct: 712 VEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKR 771
Query: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVV 329
+ GP+L+ PLSTL NW EF ++ P + + Y GT R+ LV + R G V+
Sbjct: 772 LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQL--RSGKFN---VL 826
Query: 330 ITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELK-RFNADNKLLLTGTPLQN 388
+T++E ++D++ L WKY+IVDEGHR+KN C+L + L + A ++LLTGTPLQN
Sbjct: 827 LTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQN 886
Query: 389 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQ-NVLHMLHQILTPF 447
L ELW+LLNFLLP +F +FE WF+ + T E + E E ++ LH++L PF
Sbjct: 887 KLPELWALLNFLLPTIFKSCSTFEQWFN-APFAMTGERVDLNEEETILIIRRLHKVLRPF 945
Query: 448 LLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGR 507
LLRRLK +V ++P K E V+ +S Q+I Y + + I GS E G+
Sbjct: 946 LLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGS------EKDKKGK 999
Query: 508 PKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLL 567
+T L I Q++
Sbjct: 1000 GGAKT---------------LMNTIMQLR------------------------------- 1013
Query: 568 RKCCNHPYLIEYPIDPVTQEFKIDE------ELVTNSGKFLILDRMLPELKKRGHKVLLF 621
K CNHPY+ ++ + + EL SGKF +LDR+LP+L+ H+VLLF
Sbjct: 1014 -KICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLF 1072
Query: 622 SQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN-TDPEVFIFLVSTRAGGLG 680
QMTS++ I+ DY R+F + RLDG+ +R + FN + FIFL+STRAGGLG
Sbjct: 1073 CQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLG 1132
Query: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
+NL AADTV+I+DSDWNP DLQAQDR HRIGQ V V RL T N++++KI+ A K
Sbjct: 1133 LNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKL 1192
Query: 741 KLEKLIIHKNHF 752
+++ +I F
Sbjct: 1193 NVDQKVIQAGMF 1204
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 370 bits (950), Expect = e-102
Identities = 256/806 (31%), Positives = 407/806 (50%), Gaps = 136/806 (16%)
Query: 32 EEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQL 91
E++E ++A G E+ M ++ E+ ++ K Y F + +
Sbjct: 790 EQQESVDAEGPVVEKIMSSRSVKKQKESGEEVE---IEEFYVK---YKNFSYLHCQWASI 843
Query: 92 EEQKKKEKLERKKESLKVKKGKNSI-----------DASEEKPVMRKKRGREDESYNISE 140
E+ +K +++++K + K K+G+N D E +M R +D ++
Sbjct: 844 EDLEKDKRIQQKIKRFKAKQGQNKFLSEIEDELFNPDYVEVDRIMDFARSTDDRGEPVTH 903
Query: 141 VMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFD 200
+ K L + +D + + +E+ +K + R ET R D
Sbjct: 904 YLVKWCSLPYEDSTWERRQDIDQAK----IEEFEK-------LMSREPETERVERPPADD 952
Query: 201 PVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIA 260
+ + + ++ +R YQ+EG+ WL W N N ILADEMGLGKT+Q I
Sbjct: 953 WKKSESSR-------EYKNNNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSIT 1005
Query: 261 TIALMIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKL-VRNIYKR 319
+ + +G+ GPFLV PLST+PNW EF+ +T ++ ++YHG+Q R+ + + +Y +
Sbjct: 1006 FLYEIYLKGIHGPFLVIAPLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFK 1064
Query: 320 -------KGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKR 372
KG+ + H +IT+FE+ + D L++ W+ +++DE HR+KN C+L+ LK
Sbjct: 1065 DPQGRVIKGSYKFH-AIITTFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKM 1123
Query: 373 FNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKER 432
+ ++K+LLTGTPLQN + EL+SLL+FL P F +F F D+ +E+
Sbjct: 1124 MDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSETTFMQEFG---------DLKTEEQ 1174
Query: 433 EQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMF 492
Q L IL P +LRRLK DV + PK E ++ L+ Q+ +Y AI+
Sbjct: 1175 VQK----LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAIL-------- 1222
Query: 493 GSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPV 552
EK LS G + N+P
Sbjct: 1223 ---EKNFTFLSKGGG---------------------------------------QANVP- 1239
Query: 553 ESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKID----------EELVTNSGKFL 602
L N MM LRKCCNHPYLI + + +EFK + ++ +GK +
Sbjct: 1240 ------NLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLV 1293
Query: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
++D++LP+LK GH+VL+FSQM LDIL DY R + + R+DG + + R+ + F+
Sbjct: 1294 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1353
Query: 663 T-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYR 721
D + F+FL+ TRAGGLGINLTAADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V +YR
Sbjct: 1354 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1413
Query: 722 LVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY- 780
L+T N+ ++++ ++A+ K L+K ++ G+ L KE+ +LL+ Y
Sbjct: 1414 LITRNSYEREMFDKASLKLGLDKAVLQS---MSGRENATNGVQQLSKKEIEDLLRKGAYG 1470
Query: 781 ---EREIKGSREKVISDKDLELLLDR 803
+ E +GS+ ++D++ +L R
Sbjct: 1471 ALMDEEDEGSK---FCEEDIDQILLR 1493
>gi|29244924 chromodomain helicase DNA binding protein 6 [Homo
sapiens]
Length = 2715
Score = 366 bits (939), Expect = e-101
Identities = 229/605 (37%), Positives = 337/605 (55%), Gaps = 104/605 (17%)
Query: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLST 282
+R YQ+EGM WL W N N ILADEMGLGKT+Q I ++ + RG+ GPFL+ PLST
Sbjct: 461 LREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLSEIFLRGIHGPFLIIAPLST 520
Query: 283 LPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRN--IYKR------KGTLQIHPVVITSFE 334
+ NW EF+ +T ++ ++YHG+Q RQ + + +Y+ G + H VVIT+FE
Sbjct: 521 ITNWEREFRTWT-EMNAIVYHGSQISRQMIQQYEMVYRDAQGNPLSGVFKFH-VVITTFE 578
Query: 335 IAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELW 394
+ + D L+ +W +I+DE HR+KN C+L+ LK ++K+LLTGTPLQN++ EL+
Sbjct: 579 MILADCPELKKIHWSCVIIDEAHRLKNRNCKLLEGLKLMALEHKVLLTGTPLQNSVEELF 638
Query: 395 SLLNFLLPDVFDDLKSF-ESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLK 453
SLLNFL P F +F E + D+ K EQ + L IL P +LRRLK
Sbjct: 639 SLLNFLEPSQFPSETAFLEEFGDL------------KTEEQ--VKKLQSILKPMMLRRLK 684
Query: 454 SDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTR 513
DV + PK+E ++ L+ Q+ +Y AI
Sbjct: 685 DDVEKNLAPKQETIIEVELTNIQKKYYRAI------------------------------ 714
Query: 514 KSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNH 573
LEK S + ++ N+P L N MM LRKCCNH
Sbjct: 715 --------------LEKNFSFLTKGANQH------NMP-------NLINTMMELRKCCNH 747
Query: 574 PYLIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRGHKVLLFSQ 623
PYLI + + ++F+ + ++ +GK +++D++LP+L GHKVL+FSQ
Sbjct: 748 PYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLIDKLLPKLIAGGHKVLIFSQ 807
Query: 624 MTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSF-NTDPEVFIFLVSTRAGGLGIN 682
M LDIL DY R + + R+DG + + R+ + F D + F+FL+ TRAGGLGIN
Sbjct: 808 MVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKPDSDRFVFLLCTRAGGLGIN 867
Query: 683 LTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKL 742
LTAADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V VYRL+T N+ ++++ ++A+ K L
Sbjct: 868 LTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGL 927
Query: 743 EKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREKVISDKDLE 798
+K ++ + KGG +G+ L E+ +LL+ Y + E +GS+ ++D++
Sbjct: 928 DKAVLQDINRKGGTNGVQQ----LSKMEVEDLLRKGAYGALMDEEDEGSK---FCEEDID 980
Query: 799 LLLDR 803
+L R
Sbjct: 981 QILQR 985
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 357 bits (915), Expect = 3e-98
Identities = 226/613 (36%), Positives = 335/613 (54%), Gaps = 99/613 (16%)
Query: 213 QQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPG 272
Q + G +R YQ+EG+ WL W N N ILADEMGLGKT+Q I + ++ G+ G
Sbjct: 850 QSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLTGIRG 909
Query: 273 PFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR-NIYKRKGTLQI------ 325
PFL+ PLST+ NW EF+ +T DI ++YHG+ RQ + + +Y R +I
Sbjct: 910 PFLIIAPLSTIANWEREFRTWT-DINVVVYHGSLISRQMIQQYEMYFRDSQGRIIRGAYR 968
Query: 326 HPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTP 385
+IT+FE+ + L W+ +I+DE HR+KN C+L+ LK N ++K+LLTGTP
Sbjct: 969 FQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVLLTGTP 1028
Query: 386 LQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILT 445
LQN + EL+SLL+FL P F +F F D+ +E+ Q L IL
Sbjct: 1029 LQNTVEELFSLLHFLEPLRFPSESTFMQEFG---------DLKTEEQVQK----LQAILK 1075
Query: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPT 505
P +LRRLK DV ++ PK E ++ L+ Q+ +Y AI+ +
Sbjct: 1076 PMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK------------------- 1116
Query: 506 GRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMM 565
N+S + + + N+P L N MM
Sbjct: 1117 -----------NFSFLS--------------------KGAGQTNVP-------NLVNTMM 1138
Query: 566 LLRKCCNHPYLIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRG 615
LRKCCNHPYLI+ + + EF+ + ++ ++GK +++D++LP++K G
Sbjct: 1139 ELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLPKMKAGG 1198
Query: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVST 674
HKVL+FSQM LDIL DY + + + R+DG + + R+ + F+ D + F+FL+ T
Sbjct: 1199 HKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCT 1258
Query: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
RAGGLGINLTAADT II+DSDWNPQ+DLQAQ RCHRIGQ K V VYRLVT N+ ++++ +
Sbjct: 1259 RAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSYEREMFD 1318
Query: 735 RAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREK 790
RA+ K L+K ++ G +S + + L KE+ +LL+ Y E E +GS+
Sbjct: 1319 RASLKLGLDKAVLQS--MSGRESNVGGIQQ-LSKKEIEDLLRRGAYGAIMEEEDEGSK-- 1373
Query: 791 VISDKDLELLLDR 803
++D++ +L R
Sbjct: 1374 -FCEEDIDQILLR 1385
Score = 32.7 bits (73), Expect = 1.4
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 75 SNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDE 134
S Y+K T++ ++Q+KK + E K+E + +I ++E+ R E
Sbjct: 494 SGTYTKLQNTQVRVMSEKKQRKKVESESKQEKAN-RIISEAIAKAKERGERNIPRVMSPE 552
Query: 135 SYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSII 183
++ + V KEE K+K +++D S T C + +K K II
Sbjct: 553 NFPTASVEGKEEKKGRRMKSKPKDKD--SKKTKTCSKLKEKTKIGKLII 599
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 350 bits (898), Expect = 3e-96
Identities = 215/538 (39%), Positives = 303/538 (56%), Gaps = 78/538 (14%)
Query: 219 TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPGPFLVC 277
TG +R YQ+EG+ WL + IL DEMGLGKT Q IA + R GPFL+
Sbjct: 42 TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLIL 101
Query: 278 GPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAM 337
PLS L NW E +RF P + + Y G +EER L +++ K + H V++T++EI +
Sbjct: 102 CPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQDL---KQESRFH-VLLTTYEICL 157
Query: 338 RDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLL 397
+D + L+ W L+VDE HR+KN L + L F+ LLLTGTP+QN+L EL+SLL
Sbjct: 158 KDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQNSLQELYSLL 217
Query: 398 NFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA 457
+F+ PD+F S ++ + +DI E+E LH++L PFLLRR+K++VA
Sbjct: 218 SFVEPDLF-------SKEEVGDFIQRYQDI---EKESESASELHKLLQPFLLRRVKAEVA 267
Query: 458 LEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSIN 517
E+P K EVV+Y +S Q+ +Y AI+ + +
Sbjct: 268 TELPKKTEVVIYHGMSALQKKYYKAILMKDL----------------------------- 298
Query: 518 YSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLI 577
D F NE K + KLQNI+ LRKC +HPYL
Sbjct: 299 ----DAFENETAKKV--------------------------KLQNILSQLRKCVDHPYLF 328
Query: 578 EYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHL 637
+ ++P + F++ + L SGK +LD++L L GH+VLLFSQMT MLDIL DY
Sbjct: 329 D-GVEP--EPFEVGDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDY 385
Query: 638 RDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWN 697
R +++ R+DGS+ ER + +F P +F+FL+STRAGG+G+NLTAADTVI DSD+N
Sbjct: 386 RGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGGVGMNLTAADTVIFVDSDFN 444
Query: 698 PQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGG 755
PQ+DLQA R HRIGQ K V V RL+ +T+++ + +AA+K +L +II HF G
Sbjct: 445 PQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLG 502
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 348 bits (893), Expect = 1e-95
Identities = 225/603 (37%), Positives = 327/603 (54%), Gaps = 99/603 (16%)
Query: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLST 282
+R YQ+EG+ WL W N N ILADEMGLGKT+Q IA + + G+ GPFLV PLST
Sbjct: 532 LREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYNVGIHGPFLVIAPLST 591
Query: 283 LPNWMAEFKRFTPDIPTMLYHGTQEERQKLVR-NIYKRKGTLQIHP------VVITSFEI 335
+ NW EF +T ++ T++YHG+ RQ + + +Y + ++ P +IT+FE+
Sbjct: 592 ITNWEREFNTWT-EMNTIVYHGSLASRQMIQQYEMYCKDSRGRLIPGAYKFDALITTFEM 650
Query: 336 AMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWS 395
+ D L+ W+ +I+DE HR+KN C+L+ LK + ++K+LLTGTPLQN + EL+S
Sbjct: 651 ILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFS 710
Query: 396 LLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSD 455
LL+FL P F F F D+ +E+ Q L IL P +LRRLK D
Sbjct: 711 LLHFLEPSQFPSESEFLKDFG---------DLKTEEQVQK----LQAILKPMMLRRLKED 757
Query: 456 VALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKS 515
V + PK+E + IE+ T K+ R
Sbjct: 758 VEKNLAPKQETI--------------------------------IEVELTNIQKKYYRAI 785
Query: 516 INYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPY 575
LEK S + + N+P L N MM LRKCCNHPY
Sbjct: 786 ------------LEKNFSFLS------KGAGHTNMP-------NLLNTMMELRKCCNHPY 820
Query: 576 LIEYPIDPVTQEFKID----------EELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 625
LI + + EF+ + +V ++GK +++D++LP+LK GHKVL+FSQM
Sbjct: 821 LINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMV 880
Query: 626 SMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVSTRAGGLGINLT 684
LDIL DY R + + R+DG + + R+ + F+ D + F+FL+ TRAGGLGINLT
Sbjct: 881 RCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLT 940
Query: 685 AADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEK 744
AADT II+DSDWNPQ+DLQAQ RCHRIGQ+K V VYRL+T N+ ++++ ++A+ K L+K
Sbjct: 941 AADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDK 1000
Query: 745 LIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDY----EREIKGSREKVISDKDLELL 800
++ G+ G KE+ +LL+ Y E + +GS+ ++D++ +
Sbjct: 1001 AVLQS---MSGRDGNITGIQQFSKKEIEDLLRKGAYAAIMEEDDEGSK---FCEEDIDQI 1054
Query: 801 LDR 803
L R
Sbjct: 1055 LLR 1057
Score = 30.8 bits (68), Expect = 5.5
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 27/205 (13%)
Query: 31 LEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQ 90
+EE +LE +K EKA R R Q++ N + + E++
Sbjct: 167 MEENRRLE------HQKKQEKANRIVAEAIARARARGEQNIPRVLN-EDELPSVRPEEEG 219
Query: 91 LEEQKKKEKLERKKESLKVKKGKNSIDASEEK---------PVMRKKRGREDESYNISEV 141
++++KK ER KE K KK K S AS+ K PV+ KKR R S N
Sbjct: 220 EKKRRKKSAGERLKEE-KPKKSKTS-GASKTKGKSKLNTITPVVGKKRKRNTSSDN---- 273
Query: 142 MSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDP 201
S E++ + EDE SS K K + ++++ + P
Sbjct: 274 -SDVEVMPA----QSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITDDEEEEEVDVTGP 328
Query: 202 VRKCNGQPVPFQQPKHFTGGVMRWY 226
++ P P Q+P T M+++
Sbjct: 329 IKPEPILPEPVQEPDGETLPSMQFF 353
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 337 bits (863), Expect = 4e-92
Identities = 204/544 (37%), Positives = 314/544 (57%), Gaps = 26/544 (4%)
Query: 206 NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264
NG +QP + ++ YQ G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A
Sbjct: 479 NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538
Query: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324
+ Q G GP L+ P ST+ NW+ E + P + + Y+G+QEER+++ NI+ R +
Sbjct: 539 LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595
Query: 325 IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381
+ V++T++ A+ DR+ + Y I DEGH +KNM + L NA+N+LLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440
TGTP+QNNL EL SLLNF++P +F S F + S + I KER + H
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711
Query: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETI 500
QI+ PF+LRR+K +V ++PPK++ + +S+KQE Y + NR ++ ++
Sbjct: 712 KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT 771
Query: 501 ELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKL 560
E+ + RK N+ + EKL Q + +E E N + E ++++
Sbjct: 772 EMCNV---MMQLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-DMEV 826
Query: 561 QNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 620
L C + ++ F++D +L+ +SGKF +L +L ELK++G +V+L
Sbjct: 827 MTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVL 877
Query: 621 FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680
FSQ T MLDIL + RLDG SER + FNTD ++F+FL+ST+AGGLG
Sbjct: 878 FSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLG 937
Query: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
INLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++ TI++ +++ K
Sbjct: 938 INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997
Query: 741 KLEK 744
KLE+
Sbjct: 998 KLEQ 1001
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 337 bits (863), Expect = 4e-92
Identities = 206/544 (37%), Positives = 314/544 (57%), Gaps = 28/544 (5%)
Query: 206 NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264
NG +QP + ++ YQ G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A
Sbjct: 479 NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538
Query: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324
+ Q G GP L+ P ST+ NW+ E + P + + Y+G+QEER+++ NI+ R +
Sbjct: 539 LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595
Query: 325 IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381
+ V++T++ A+ DR+ + Y I DEGH +KNM + L NA+N+LLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440
TGTP+QNNL EL SLLNF++P +F S F + S + I KER + H
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711
Query: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETI 500
QI+ PF+LRR+K +V ++PPK++ + +S+KQE Y + NR + + EK T
Sbjct: 712 KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR-LKKSINNLEKNTE 770
Query: 501 ELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKL 560
+ + RK N+ + EKL Q + +E E N + E ++++
Sbjct: 771 MCNVM----MQLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-DMEV 824
Query: 561 QNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 620
L C + ++ F++D +L+ +SGKF +L +L ELK++G +V+L
Sbjct: 825 MTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVL 875
Query: 621 FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680
FSQ T MLDIL + RLDG SER + FNTD ++F+FL+ST+AGGLG
Sbjct: 876 FSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLG 935
Query: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
INLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++ TI++ +++ K
Sbjct: 936 INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 995
Query: 741 KLEK 744
KLE+
Sbjct: 996 KLEQ 999
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 337 bits (863), Expect = 4e-92
Identities = 204/544 (37%), Positives = 314/544 (57%), Gaps = 26/544 (4%)
Query: 206 NGQPVPFQQPKHFTGGV-MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIAL 264
NG +QP + ++ YQ G+ WL ++ ++G+NGILADEMGLGKT+Q IA +A
Sbjct: 479 NGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAY 538
Query: 265 MIQRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQ 324
+ Q G GP L+ P ST+ NW+ E + P + + Y+G+QEER+++ NI+ R +
Sbjct: 539 LYQEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSR---YE 595
Query: 325 IHPVVITSFEIAMR---DRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLL 381
+ V++T++ A+ DR+ + Y I DEGH +KNM + L NA+N+LLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 382 TGTPLQNNLSELWSLLNFLLPDVFDDLKS-FESWFDITSLSETAEDIIAKEREQNVLHML 440
TGTP+QNNL EL SLLNF++P +F S F + S + I KER + H
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKER---IAHA- 711
Query: 441 HQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETI 500
QI+ PF+LRR+K +V ++PPK++ + +S+KQE Y + NR ++ ++
Sbjct: 712 KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNT 771
Query: 501 ELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKL 560
E+ + RK N+ + EKL Q + +E E N + E ++++
Sbjct: 772 EMCNV---MMQLRKMANHPLLHRQYYTAEKLKEMSQLML-KEPTHCEANPDLIFE-DMEV 826
Query: 561 QNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLL 620
L C + ++ F++D +L+ +SGKF +L +L ELK++G +V+L
Sbjct: 827 MTDFELHVLCKQYRHI---------NNFQLDMDLILDSGKFRVLGCILSELKQKGDRVVL 877
Query: 621 FSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLG 680
FSQ T MLDIL + RLDG SER + FNTD ++F+FL+ST+AGGLG
Sbjct: 878 FSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLG 937
Query: 681 INLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKR 740
INLT+A+ VI++D D NP +D QA+DRCHR+GQTK V+V +L++ TI++ +++ K
Sbjct: 938 INLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKL 997
Query: 741 KLEK 744
KLE+
Sbjct: 998 KLEQ 1001
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 307 bits (786), Expect = 3e-83
Identities = 239/776 (30%), Positives = 382/776 (49%), Gaps = 115/776 (14%)
Query: 86 MEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISE----- 140
++QQ+++ KK E ++K++ +K GK S + E ++ ++ Y I E
Sbjct: 327 LQQQKVKGLKKLENFKKKEDEIKQWLGKVSPEDVEYFNCQQELASELNKQYQIVERVIAV 386
Query: 141 -----VMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDRLSETV---- 191
+ + + + ++K NE E + + + + + ++I + +
Sbjct: 387 KTSKSTLGQTDFPAHSRKPAPSNEPEYLCKW-MGLPYSECSWEDEALIGKKFQNCIDSFH 445
Query: 192 -RQNTKFFFDPVRKCNGQP-----VPFQQPKHFTGGV---MRWYQVEGMEWLRMLWENGI 242
R N+K P R+C V ++ + GG +R YQ+EG+ WL W
Sbjct: 446 SRNNSKTI--PTRECKALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLAHSWCKNN 503
Query: 243 NGILADEMGLGKTVQCIATIALMI-QRGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTML 301
+ ILADEMGLGKT+Q I+ ++ + Q + GPFL+ PLSTL +W EF+ + P+I ++
Sbjct: 504 SVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLSTLTSWQREFEIWAPEINVVV 563
Query: 302 YHGTQEERQKLVRNIYKRKGTLQIH-PVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
Y G R + + T ++ +IT++EI ++D+ L W +L VDE HR+K
Sbjct: 564 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLK 623
Query: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSL 420
N L + L F ++++LL+TGTPLQN+L ELWSLL+F++P+ FE W D
Sbjct: 624 NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE------KFEFWEDF--- 674
Query: 421 SETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFY 480
E+ K RE N LH++L PFLLRR+K DV +P K E ++ +S Q+ +Y
Sbjct: 675 ----EEDHGKGRE-NGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYY 729
Query: 481 TAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQ---IQP 537
I+ R + + T S + EL+K + I+P
Sbjct: 730 KWILTRNYKALAKGTRGST-------------------SGFLNIVMELKKCCNHCYLIKP 770
Query: 538 EVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTN 597
+ ER Q I++ L + L++ K+ L
Sbjct: 771 PEENERE--------------NGQEILLSLIRSSGKLILLD----------KLLTRLRER 806
Query: 598 SGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKN 657
+ LI +M+ MLDIL +Y ++ + F RLDGS+ R++
Sbjct: 807 GNRVLIFSQMV-----------------RMLDILAEYLTIKHYPFQRLDGSIKGEIRKQA 849
Query: 658 MHSFNTD-PEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKP 716
+ FN D E F FL+STRAGGLGINL +ADTV+I+DSDWNPQ+DLQAQ R HRIGQ K
Sbjct: 850 LDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQ 909
Query: 717 VVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKG-----GQSGLNLSKNFLDPKEL 771
V +YRLVT T++++I+ERA K L+ L+I + G SG + S F + +EL
Sbjct: 910 VNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPF-NKEEL 968
Query: 772 MELLK--SRDYEREIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKI 825
+LK + D +E++G E + D++ +L ++ + ++ E + FK+
Sbjct: 969 TAILKFGAEDLFKELEG-EESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKV 1023
Score = 31.2 bits (69), Expect = 4.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 494 SSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRER 543
S E + + +P + +RR K+++Y + DDF + + LI VD ++
Sbjct: 208 SDEDDDDDEAPKRQTRRRAAKNVSYKEDDDFETDSDDLIEMTGEGVDEQQ 257
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 290 bits (742), Expect = 4e-78
Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)
Query: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q
Sbjct: 711 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 770
Query: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316
I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N
Sbjct: 771 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
Query: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
+ KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K
Sbjct: 831 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
Query: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419
N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 890 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 949
Query: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479
ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ +
Sbjct: 950 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
Query: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Y I+ R + +R N + + +L+K + P +
Sbjct: 996 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1034
Query: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596
A+ +P E +K +MLL+K +L
Sbjct: 1035 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1074
Query: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656
+ LI +M ++M +L+ +DY + + R+DG ++ + R++
Sbjct: 1075 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1117
Query: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715
+ FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ
Sbjct: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
Query: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773
V++YR VT +++++I + A K L L++ G ++G ++SK LD K E
Sbjct: 1178 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1234
Query: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
L + E E K VI ++ + LLDR+ + + E + FK+ +
Sbjct: 1235 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1290
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 290 bits (742), Expect = 4e-78
Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)
Query: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q
Sbjct: 711 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 770
Query: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316
I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N
Sbjct: 771 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 830
Query: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
+ KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K
Sbjct: 831 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 889
Query: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419
N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 890 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 949
Query: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479
ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ +
Sbjct: 950 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 995
Query: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Y I+ R + +R N + + +L+K + P +
Sbjct: 996 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1034
Query: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596
A+ +P E +K +MLL+K +L
Sbjct: 1035 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1074
Query: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656
+ LI +M ++M +L+ +DY + + R+DG ++ + R++
Sbjct: 1075 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1117
Query: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715
+ FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ
Sbjct: 1118 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1177
Query: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773
V++YR VT +++++I + A K L L++ G ++G ++SK LD K E
Sbjct: 1178 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1234
Query: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
L + E E K VI ++ + LLDR+ + + E + FK+ +
Sbjct: 1235 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1290
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 290 bits (742), Expect = 4e-78
Identities = 215/656 (32%), Positives = 322/656 (49%), Gaps = 105/656 (16%)
Query: 201 PVRKCNGQPVPFQQPKHF---TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 257
P N V ++ F TGG + YQ+EG+ WLR W G + ILADEMGLGKT+Q
Sbjct: 770 PSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQ 829
Query: 258 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNI 316
I + + + G GPFLV PLST+ NW EF+ + P + Y G ++ R + N
Sbjct: 830 TIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENE 889
Query: 317 Y----------------KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIK 360
+ KR+ ++ H V++TS+E+ D+ AL W L+VDE HR+K
Sbjct: 890 FSFEDNAIKGGKKAFKMKREAQVKFH-VLLTSYELITIDQAALGSIRWACLVVDEAHRLK 948
Query: 361 NMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITS 419
N + + R L + D+KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 949 NNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK 1008
Query: 420 LSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIF 479
ED I K LH +L P +LRRLK+DV +P K E++V LS Q+ +
Sbjct: 1009 -----EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKY 1054
Query: 480 YTAIVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEV 539
Y I+ R + +R N + + +L+K + P +
Sbjct: 1055 YKYILTRNFEAL-------------------NSRGGGNQVSLLNIMMDLKKCCN--HPYL 1093
Query: 540 DRERAVVEVNIP---VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVT 596
A+ +P E +K +MLL+K +L
Sbjct: 1094 FPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKML--------------------RKLKE 1133
Query: 597 NSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREK 656
+ LI +M ++M +L+ +DY + + R+DG ++ + R++
Sbjct: 1134 QGHRVLIFSQM--------------TKMLDLLEDFLDY---EGYKYERIDGGITGALRQE 1176
Query: 657 NMHSFNT-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTK 715
+ FN + F FL+STRAGGLGINL ADTVII+DSDWNP +D+QA R HRIGQ
Sbjct: 1177 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQAN 1236
Query: 716 PVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDP--KELME 773
V++YR VT +++++I + A K L L++ G ++G ++SK LD K E
Sbjct: 1237 KVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPG--LGSKAG-SMSKQELDDILKFGTE 1293
Query: 774 LLKSRDYEREIKGSREKVI--SDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
L + E E K VI ++ + LLDR+ + + E + FK+ +
Sbjct: 1294 ELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQ 1349
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 289 bits (739), Expect = 9e-78
Identities = 204/595 (34%), Positives = 296/595 (49%), Gaps = 99/595 (16%)
Query: 200 DPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCI 259
DP K + QP TGG + YQ+EG+ WLR W G + ILADEMGLGKTVQ I
Sbjct: 681 DPTVKFDKQPWYIDS----TGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTI 736
Query: 260 ATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRN--- 315
+ + + G GP+LV PLST+ NW EF+ + PD + Y G +E R + N
Sbjct: 737 VFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFS 796
Query: 316 -----------IYKRKGTLQIH-PVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMK 363
+++ K +QI V++TS+E+ D+ L W L+VDE HR+KN +
Sbjct: 797 FEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQ 856
Query: 364 CRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSF-ESWFDITSLSE 422
+ R L + D KLLLTGTPLQNNL EL+ LLNFL P+ F++L+ F E + DI+
Sbjct: 857 SKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISK--- 913
Query: 423 TAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTA 482
ED I K LH +L P +LRRLK+DV +P K E++V LS+ Q+ +Y
Sbjct: 914 --EDQIKK---------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKF 962
Query: 483 IVNRTIANMFGSSEKETIELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRE 542
I+ R + + L +K N+ + FP V
Sbjct: 963 ILTRNFEALNSKGGGNQVSLL---NIMMDLKKCCNHPYL--FP-------------VAAV 1004
Query: 543 RAVVEVNIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFL 602
A V N + +K +MLL+K ++L + L
Sbjct: 1005 EAPVLPNGSYDGSSLVKSSGKLMLLQKML--------------------KKLRDEGHRVL 1044
Query: 603 ILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFN 662
I +M ++M +L+ ++Y + + R+DG ++ R++ + FN
Sbjct: 1045 IFSQM--------------TKMLDLLEDFLEY---EGYKYERIDGGITGGLRQEAIDRFN 1087
Query: 663 T-DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYR 721
+ F FL+STRAGGLGINL ADTVIIYDSDWNP +D+QA R HRIGQ K V++YR
Sbjct: 1088 APGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR 1147
Query: 722 LVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLK 776
VT +++++I + A K L L++ + GL + +EL ++LK
Sbjct: 1148 FVTRASVEERITQVAKRKMMLTHLVV--------RPGLGSKSGSMTKQELDDILK 1194
Score = 31.2 bits (69), Expect = 4.2
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 86 MEQQQLEEQKKKEKLERKKESLKVKKGKNSIDA-SEEKPVMRKKRGREDESYNISEVMSK 144
+E L ++KK +KL+ K K KK + S D SE + + +K E Y+ ++ K
Sbjct: 42 VEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKK 101
Query: 145 E--EILSVAKKNKKENEDENSS 164
+ + K KK++EDE+ +
Sbjct: 102 KLKDKKEKKAKRKKKDEDEDDN 123
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 269 bits (687), Expect = 9e-72
Identities = 203/658 (30%), Positives = 313/658 (47%), Gaps = 130/658 (19%)
Query: 213 QQPKHF--TGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRG- 269
+QP++ TGG + YQ+EG+ WLR W G + ILADEMGLGKTVQ + + + G
Sbjct: 714 RQPEYLDATGGTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGH 773
Query: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIY------------ 317
GPFLV PLST+ NW EF+ + PD+ + Y G ++ R + N +
Sbjct: 774 SKGPFLVSAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKK 833
Query: 318 ----KRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 373
K++ +++ H V++TS+E+ D L W LIVDE HR+KN + + R
Sbjct: 834 ASRMKKEASVKFH-VLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFR----- 887
Query: 374 NADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKERE 433
+L G LQ+ L + L L ++F L + + ER
Sbjct: 888 ------VLNGYSLQHKLLLTGTPLQNNLEELFHLL-----------------NFLTPERF 924
Query: 434 QNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFG 493
N+ L + +D+A E + K ++ ++ R A++F
Sbjct: 925 HNLEGFLEEF----------ADIAKE----------DQIKKLHDMLGPHMLRRLKADVFK 964
Query: 494 SSEKET-----IELSPTGRPKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEV 548
+ +T +ELSP + + + N+ ++ +
Sbjct: 965 NMPSKTELIVRVELSPMQKKYYKYILTRNFEALNARGGGNQ------------------- 1005
Query: 549 NIPVESEVNLKLQNIMMLLRKCCNHPYLIEYPID----PVTQEFKID-EELVTNSGKFLI 603
+ L N++M L+KCCNHPYL +P+ P D L+ SGK L+
Sbjct: 1006 ---------VSLLNVVMDLKKCCNHPYL--FPVAAMEAPKMPNGMYDGSALIRASGKLLL 1054
Query: 604 LDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT 663
L +ML LK+ GH+VL+FSQMT MLD+L D+ + + R+DG ++ + R++ + FN
Sbjct: 1055 LQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNA 1114
Query: 664 D-PEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
+ F FL+STRAGGLGINL ADTVIIYDSDWNP +D+QA R HRIGQ K V++YR
Sbjct: 1115 PGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRF 1174
Query: 723 VTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYE- 781
VT +++++I + A K L L++ + GL + +EL ++LK E
Sbjct: 1175 VTRASVEERITQVAKKKMMLTHLVV--------RPGLGSKTGSMSKQELDDILKFGTEEL 1226
Query: 782 ------------REIKGSREKVISDKDLELLLDRSDLIDQMNASGPIKEKMGIFKILE 827
+E + S DK +E LLDR+ + + E + FK+ +
Sbjct: 1227 FKDEATDGGGDNKEGEDSSVIHYDDKAIERLLDRNQDETEDTELQGMNEYLSSFKVAQ 1284
Score = 30.8 bits (68), Expect = 5.5
Identities = 32/131 (24%), Positives = 65/131 (49%), Gaps = 25/131 (19%)
Query: 12 SEAPAMVEQLDTAVITPAMLEEEEQLEAAGLER--ERKMLEKARMSWDRESTEIRYRRLQ 69
++APA + + V+ P E EE++E A ++ E M + + + D E E
Sbjct: 1595 TQAPAPASEDEKVVVEPP--EGEEKVEKAEVKERTEEPMETEPKGAADVEKVE------- 1645
Query: 70 HLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKR 129
EKS I ++ + ++++ EE++KKE + ++ G+ D ++EK +KK
Sbjct: 1646 ---EKSAIDLTPIVVEDKEEKKEEEEKKE--------VMLQNGETPKDLNDEK---QKKN 1691
Query: 130 GREDESYNISE 140
++ +NI++
Sbjct: 1692 IKQRFMFNIAD 1702
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 256 bits (653), Expect = 8e-68
Identities = 170/494 (34%), Positives = 254/494 (51%), Gaps = 85/494 (17%)
Query: 7 AGSGGSEAPAMVEQLDTAVITPAMLEEEEQLEAAGLERERKMLEKARMSWDRESTEIRYR 66
+ GG E A PA E EE + A +++++ E ++ T+ R
Sbjct: 32 SNKGGPEGVAAQAVASAVSAGPADAEMEEIFDDASPGKQKEIQEPDPTYEEKMQTD-RAN 90
Query: 67 RLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMR 126
R ++LL+++ +++ F+ Q QK LK+K G+ I E++ ++
Sbjct: 91 RFEYLLKQTELFAHFI-------QPAAQKTPTS------PLKMKPGRPRIKKDEKQNLLS 137
Query: 127 KKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSSSTNLCVEDLQKNKDSNSIIKDR 186
D + +E EE+L+ E+S +TN+C + +DS S +K
Sbjct: 138 VG----DYRHRRTEQEEDEELLT-----------ESSKATNVCT----RFEDSPSYVK-- 176
Query: 187 LSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGIL 246
G +R YQV G+ WL L+ENGINGIL
Sbjct: 177 ---------------------------------WGKLRDYQVRGLNWLISLYENGINGIL 203
Query: 247 ADEMGLGKTVQCIATIALMIQ-RGVPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGT 305
ADEMGLGKT+Q I+ + M R +PGP +V P STL NWM+EFKR+ P + ++ G
Sbjct: 204 ADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGD 263
Query: 306 QEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCR 365
+E+R VR++ V +TS+E+ +++++ + W+YL++DE HRIKN K +
Sbjct: 264 KEQRAAFVRDVLLPGEW----DVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSK 319
Query: 366 LIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAE 425
L ++ F N+LLLTGTPLQNNL ELWSLLNFLLPDVF+ F+SWFD +
Sbjct: 320 LSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--- 376
Query: 426 DIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVN 485
+Q ++ LH +L PFLLRR+K+DV +PPK+EV +Y LSK Q +YT I+
Sbjct: 377 -------DQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILM 429
Query: 486 R--TIANMFGSSEK 497
+ I N G +K
Sbjct: 430 KDIDILNSAGKMDK 443
Score = 227 bits (578), Expect = 4e-59
Identities = 116/249 (46%), Positives = 172/249 (69%), Gaps = 15/249 (6%)
Query: 558 LKLQNIMMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRG 615
++L NI+M LRKCCNHPYL + P P T D LVTNSGK ++LD++LP+LK++G
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTT----DMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEV-FIFLVST 674
+VL+FSQMT +LDIL DYC R++ + RLDG + ER+ +++++N F+F++ST
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLST 559
Query: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
RAGGLGINL AD VI+YDSDWNPQ DLQA DR HRIGQTK V V+R +T NT++++IVE
Sbjct: 560 RAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVE 619
Query: 735 RAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISD 794
RA K +L+ ++I + ++ + N + E+++++ R + S+E I+D
Sbjct: 620 RAEMKLRLDSIVIQQGRL------VDQNLNKIGKDEMLQMI--RHGATHVFASKESEITD 671
Query: 795 KDLELLLDR 803
+D++ +L+R
Sbjct: 672 EDIDGILER 680
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 255 bits (652), Expect = 1e-67
Identities = 143/417 (34%), Positives = 236/417 (56%), Gaps = 26/417 (6%)
Query: 94 QKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKK 153
+K ++K E+ S ++K + + +E +++ + D + ++ + E+ + +
Sbjct: 51 EKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQ 110
Query: 154 NKKENEDENSSSTNLCVEDLQKNKDSNSIIKD--RLSETVRQNTKFFFDPVRKCNGQPVP 211
+ + + L ++K++ + I R T ++ + RK + +
Sbjct: 111 PSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIR 170
Query: 212 FQ-QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269
F+ P + GG +R YQ+ G+ WL L+ENG+NGILADEMGLGKT+Q IA + L R
Sbjct: 171 FEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRN 230
Query: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHP-- 327
+PGP +V P STL NWM EFKR+ P + + + G ++ R +R+ ++ P
Sbjct: 231 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRD--------EMMPGE 282
Query: 328 --VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTP 385
V +TS+E+ +++++ + +W+YL++DE HRIKN K +L ++ F + N+LLLTGTP
Sbjct: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTP 342
Query: 386 LQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILT 445
LQNNL ELW+LLNFLLPDVF+ F+SWFD + +Q ++ LH +L
Sbjct: 343 LQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCL----------GDQKLVERLHAVLK 392
Query: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIEL 502
PFLLRR+K+DV +PPK+E+ +Y LSK Q +YT I+ + I + S + + + L
Sbjct: 393 PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 449
Score = 232 bits (591), Expect = 1e-60
Identities = 120/251 (47%), Positives = 173/251 (68%), Gaps = 15/251 (5%)
Query: 558 LKLQNIMMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRG 615
++L NI+M LRKCCNHPYL + P P T DE +V+NSGK ++LD++L +LK++G
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTT----DEHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT-DPEVFIFLVST 674
+VL+FSQMT +LDIL DYC R + + RLDG + ERE+ + +FN + FIF++ST
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNAPNSSKFIFMLST 562
Query: 675 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734
RAGGLGINL +AD VI+YDSDWNPQ DLQA DR HRIGQ KPV V+RL+T NT++++IVE
Sbjct: 563 RAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVE 622
Query: 735 RAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYEREIKGSREKVISD 794
RA K +L+ ++I + QS N L +E+++++ R + S+E ++D
Sbjct: 623 RAEIKLRLDSIVIQQGRLIDQQS------NKLAKEEMLQMI--RHGATHVFASKESELTD 674
Query: 795 KDLELLLDRSD 805
+D+ +L+R +
Sbjct: 675 EDITTILERGE 685
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 255 bits (652), Expect = 1e-67
Identities = 143/417 (34%), Positives = 236/417 (56%), Gaps = 26/417 (6%)
Query: 94 QKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKK 153
+K ++K E+ S ++K + + +E +++ + D + ++ + E+ + +
Sbjct: 51 EKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQ 110
Query: 154 NKKENEDENSSSTNLCVEDLQKNKDSNSIIKD--RLSETVRQNTKFFFDPVRKCNGQPVP 211
+ + + L ++K++ + I R T ++ + RK + +
Sbjct: 111 PSAQKSPTSPLNMKLGRPRIKKDEKQSLISAGDYRHRRTEQEEDEELLSESRKTSNVCIR 170
Query: 212 FQ-QPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA-LMIQRG 269
F+ P + GG +R YQ+ G+ WL L+ENG+NGILADEMGLGKT+Q IA + L R
Sbjct: 171 FEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRN 230
Query: 270 VPGPFLVCGPLSTLPNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHP-- 327
+PGP +V P STL NWM EFKR+ P + + + G ++ R +R+ ++ P
Sbjct: 231 IPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDARAAFIRD--------EMMPGE 282
Query: 328 --VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTP 385
V +TS+E+ +++++ + +W+YL++DE HRIKN K +L ++ F + N+LLLTGTP
Sbjct: 283 WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTP 342
Query: 386 LQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILT 445
LQNNL ELW+LLNFLLPDVF+ F+SWFD + +Q ++ LH +L
Sbjct: 343 LQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCL----------GDQKLVERLHAVLK 392
Query: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKETIEL 502
PFLLRR+K+DV +PPK+E+ +Y LSK Q +YT I+ + I + S + + + L
Sbjct: 393 PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDKMRL 449
Score = 223 bits (568), Expect = 6e-58
Identities = 120/263 (45%), Positives = 172/263 (65%), Gaps = 27/263 (10%)
Query: 558 LKLQNIMMLLRKCCNHPYLIE--YPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRG 615
++L NI+M LRKCCNHPYL + P P T DE +V+NSGK ++LD++L +LK++G
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDGAEPGPPYTT----DEHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 616 HKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKN------------MHSFNT 663
+VL+FSQMT +LDIL DYC R + + RLDG + ERE + +FN
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 562
Query: 664 -DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRL 722
+ FIF++STRAGGLGINL +AD VI+YDSDWNPQ DLQA DR HRIGQ KPV V+RL
Sbjct: 563 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 622
Query: 723 VTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYER 782
+T NT++++IVERA K +L+ ++I + QS N L +E+++++ R
Sbjct: 623 ITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQS------NKLAKEEMLQMI--RHGAT 674
Query: 783 EIKGSREKVISDKDLELLLDRSD 805
+ S+E ++D+D+ +L+R +
Sbjct: 675 HVFASKESELTDEDITTILERGE 697
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 247 bits (630), Expect = 4e-65
Identities = 175/565 (30%), Positives = 275/565 (48%), Gaps = 83/565 (14%)
Query: 223 MRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIA------------LMIQRGV 270
+R YQ +G+ WL L + ++GIL D+MGLGKT+Q I +A + +
Sbjct: 1266 LRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEYARSKLAECM 1325
Query: 271 PGPFLVCGPLSTLPNWMAEFKRFTPD--IPTMLYHGTQEERQKLVRNIYKRKGTLQIHPV 328
P P LV P + +W+ E +F + + Y G ER +L + + H +
Sbjct: 1326 PLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKR-------HNL 1378
Query: 329 VITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQN 388
++ S+++ D + ++ + Y I+DEGH IKN K +L + +K+ A+ +++L+GTP+QN
Sbjct: 1379 IVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQN 1438
Query: 389 NLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHM--LHQILTP 446
N+ ELWSL +FL+P + F + + L+ ++E+E VL M LH+ + P
Sbjct: 1439 NVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLP 1498
Query: 447 FLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAI--------VNRTIANMFGSSEKE 498
FLLRR+K DV ++PPK Y LS Q Y V+ T+++ S E E
Sbjct: 1499 FLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETE 1558
Query: 499 TIELSPTG---RPKRRTRKSINYSKI------DDFPNELEKLISQIQPEVDRERAVVEVN 549
+L TG + + RK N+ + +F EKL Q D + A
Sbjct: 1559 KPKLKATGHVFQALQYLRKLCNHPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAP---- 1614
Query: 550 IPVESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLP 609
KL + LL C + + SG ++ +
Sbjct: 1615 ---------KLSALKQLLLDC------------------GLGNGSTSESGTESVVAQ--- 1644
Query: 610 ELKKRGHKVLLFSQMTSMLDIL---MDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPE 666
H++L+F Q+ SMLDI+ + HL + RLDGS+ +R + FN DP
Sbjct: 1645 ------HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPS 1698
Query: 667 VFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTAN 726
+ + L++T GGLG+NLT ADTV+ + DWNP DLQA DR HRIGQ + V VYRL+T
Sbjct: 1699 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1758
Query: 727 TIDQKIVERAAAKRKLEKLIIHKNH 751
T+++KI+ K + +I + +
Sbjct: 1759 TLEEKIMGLQKFKMNIANTVISQEN 1783
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 229 bits (584), Expect = 8e-60
Identities = 180/602 (29%), Positives = 282/602 (46%), Gaps = 106/602 (17%)
Query: 226 YQVEGMEWLRMLWENGING-ILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLP 284
+Q EG+ +L L+ +G G ILAD+MGLGKTVQ IA ++ M + L+ P + +
Sbjct: 99 HQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLIN 158
Query: 285 NWMAEFKRFTPDIPTMLYHG-TQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRDRNAL 343
W+ EF ++TP + +HG +++ER + + I +R G V+IT++++ + + L
Sbjct: 159 TWVKEFIKWTPGMRVKTFHGPSKDERTRNLNRIQQRNG------VIITTYQMLINNWQQL 212
Query: 344 -----QHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLN 398
Q W Y+I+DE H+IK + + A N+LLLTGTP+QNNL ELWSL +
Sbjct: 213 SSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFD 272
Query: 399 FLLP-DVFDDLKSFESWFDITSLSETAEDIIAKEREQN--VLHMLHQILTPFLLRRLKSD 455
F + LK+F+ ++ +D E+ + L I+ P+ LRR K D
Sbjct: 273 FACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRRTKED 332
Query: 456 VALEVPPKREVVVYAPLSKKQEIFYTAIVNRTIANMFGSSEKET----IELSPTGRPKRR 511
V + E A L++K I M S K I L P R
Sbjct: 333 VQKKKSSNPE----ARLNEKNPDV------DAICEMPSLSRKNDLIIWIRLVPLQEEIYR 382
Query: 512 TRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLLRKCC 571
S+++ K ++E P+ + +L+K C
Sbjct: 383 KFVSLDHIK----------------------ELLMETRSPLAE---------LGVLKKLC 411
Query: 572 NHPYLIEYP--------------------------IDPVTQEFKIDEELVTNSGKFLILD 605
+HP L+ ID VT D+ L+ SGK + L
Sbjct: 412 DHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHIDQVT-----DDTLMEESGKMIFLM 466
Query: 606 RMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYS-EREKNMHSFNTD 664
+L L+ GH+ L+FSQ +L+I+ R F R+DG++++ EREK ++ F +
Sbjct: 467 DLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQN 526
Query: 665 PEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVT 724
+ +FL++T+ GG+G+ LTAA V+I+D WNP +D QA DR +RIGQ + VVVYRL+T
Sbjct: 527 KDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLIT 586
Query: 725 ANTIDQKIVERAAAKRKLEKLII--HKNHFKGGQSGLNLSKNFLDPKELMELLKSRDYER 782
T+++KI R K L + KN F+ + +EL EL D +
Sbjct: 587 CGTVEEKIYRRQVFKDSLIRQTTGEKKNPFR-----------YFSKQELRELFTIEDLQN 635
Query: 783 EI 784
+
Sbjct: 636 SV 637
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 228 bits (580), Expect = 2e-59
Identities = 147/469 (31%), Positives = 245/469 (52%), Gaps = 37/469 (7%)
Query: 45 ERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKK 104
E++ LE+ ++ + + + R+L L+ ++ +Y+ F+ K + + +E++ RK
Sbjct: 362 EKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRD---MGHDGIQEEILRKL 418
Query: 105 ESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSS 164
E ++ ID V + + + + + E + + + +++
Sbjct: 419 EDSSTQR---QIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKE 475
Query: 165 STNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMR 224
S + K+ + ++R G+ +P QP F G ++
Sbjct: 476 SRAAALRAANKSGTGFGESYSLANPSIRA-------------GEDIP--QPTIFNGK-LK 519
Query: 225 WYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPGPFLVCGPLSTL 283
YQ++GM WL L+E GINGILADEMGLGKTVQ IA +A + +R + GPFL+ P STL
Sbjct: 520 GYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTL 579
Query: 284 PNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHP----VVITSFEIAMRD 339
NW EF RF P + Y G +R K++R + +K TL VVITS+++ ++D
Sbjct: 580 NNWHQEFTRFVPKFKVLPYWGNPHDR-KVIRRFWSQK-TLYTQDAPFHVVITSYQLVVQD 637
Query: 340 RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNF 399
Q W+Y+++DE +K+ + L +F N+LLLTGTP+QN ++ELW+LL+F
Sbjct: 638 VKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHF 697
Query: 400 LLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA 457
++P +FD + F WF DI S +E I ++N L LH IL PF+LRR+K DV
Sbjct: 698 IMPTLFDSHEEFNEWFSKDIESHAENKSAI-----DENQLSRLHMILKPFMLRRIKKDVE 752
Query: 458 LEVPPKREVVVYAPLSKKQEIFYTAIVNR-TIANMFGSSEKETIELSPT 505
E+ K E+++Y L+ +Q++ Y A+ N+ +I ++ SS T + T
Sbjct: 753 NELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNT 801
Score = 186 bits (472), Expect = 8e-47
Identities = 96/213 (45%), Positives = 139/213 (65%), Gaps = 10/213 (4%)
Query: 592 EELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSY 651
E L+T+SGK LD +L LK +GH+VL++SQMT M+D+L +Y R + RLDGS
Sbjct: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
Query: 652 SEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 711
SER + F ++F+FL+STRAGGLGINLTAADTVI YDSDWNP D QA DR HR+
Sbjct: 1154 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
Query: 712 GQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKEL 771
GQTK V VYRL+ TI+++I++RA K ++++++I SG N + L PKE+
Sbjct: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI---------SGGNFKPDTLKPKEV 1264
Query: 772 ME-LLKSRDYEREIKGSREKVISDKDLELLLDR 803
+ LL + E++++ +E+ ++ + +R
Sbjct: 1265 VSLLLDDEELEKKLRLRQEEKRQQEETNRVKER 1297
Score = 30.0 bits (66), Expect = 9.3
Identities = 40/173 (23%), Positives = 65/173 (37%), Gaps = 32/173 (18%)
Query: 33 EEEQLEAAGLERER----------KMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFL 82
E++ E L RE K L + + S D+E + +Y L Y
Sbjct: 143 EDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSAGLLSTYDPFYE--- 199
Query: 83 LTKMEQQQLEEQKKKEKLERKKESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVM 142
+Q+ L KKK+ E KK K+KK ++KKR R++E +
Sbjct: 200 ----QQRHLLGPKKKKFKEEKKLKAKLKK-------------VKKKRRRDEELSSEESPR 242
Query: 143 SKEEILSVAKKNKKENEDENSSSTNLCVEDL--QKNKDSNSIIKDRLSETVRQ 193
V K + + +L +E L ++ K SI+K L + +Q
Sbjct: 243 RHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQ 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,953,762
Number of Sequences: 37866
Number of extensions: 1418818
Number of successful extensions: 11521
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 614
Number of HSP's that attempted gapping in prelim test: 7341
Number of HSP's gapped (non-prelim): 3007
length of query: 838
length of database: 18,247,518
effective HSP length: 111
effective length of query: 727
effective length of database: 14,044,392
effective search space: 10210272984
effective search space used: 10210272984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.