BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] (691 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] 1406 0.0 gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens] 502 e-142 gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens] 139 1e-32 gi|74136559 prion protein interacting protein [Homo sapiens] 124 4e-28 gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] 46 1e-04 gi|110347443 TATA element modulatory factor 1 [Homo sapiens] 40 0.006 gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens] 39 0.021 gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] 34 0.40 gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] 34 0.40 gi|33383237 minichromosome maintenance complex component 10 isof... 33 0.68 gi|33383235 minichromosome maintenance complex component 10 isof... 33 0.88 gi|24497513 homeobox A3 isoform a [Homo sapiens] 33 1.2 gi|13562112 homeobox A3 isoform a [Homo sapiens] 33 1.2 gi|7657218 bromodomain-containing protein 4 isoform short [Homo ... 33 1.2 gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 33 1.2 gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens] 33 1.2 gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] 33 1.2 gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] 33 1.2 gi|120953251 neuron navigator 3 [Homo sapiens] 32 1.5 gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 32 2.0 gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 32 2.0 gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 32 2.0 gi|46195763 metastasis suppressor 1-like [Homo sapiens] 32 2.6 gi|30520335 WD repeat domain 49 [Homo sapiens] 32 2.6 gi|151301228 formin binding protein 3 [Homo sapiens] 31 3.4 gi|13540590 family with sequence similarity 117, member A [Homo ... 31 4.4 gi|239745153 PREDICTED: similar to Putative golgin subfamily A m... 30 5.7 gi|239745127 PREDICTED: similar to Putative golgin subfamily A m... 30 5.7 gi|66933005 calnexin precursor [Homo sapiens] 30 5.7 gi|10716563 calnexin precursor [Homo sapiens] 30 5.7 >gi|218505680 exoribonuclease 2 isoform 1 [Homo sapiens] Length = 691 Score = 1406 bits (3639), Expect = 0.0 Identities = 691/691 (100%), Positives = 691/691 (100%) Query: 1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE Sbjct: 1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60 Query: 61 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW Sbjct: 61 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120 Query: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI Sbjct: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180 Query: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR Sbjct: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240 Query: 241 SLNKVPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQMKSICA 300 SLNKVPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQMKSICA Sbjct: 241 SLNKVPTKKNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINPHEKVQMKSICA 300 Query: 301 NSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNE 360 NSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNE Sbjct: 301 NSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNE 360 Query: 361 HLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPE 420 HLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPE Sbjct: 361 HLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPE 420 Query: 421 ENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPH 480 ENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPH Sbjct: 421 ENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPH 480 Query: 481 TTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQ 540 TTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQ Sbjct: 481 TTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQ 540 Query: 541 AFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCG 600 AFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCG Sbjct: 541 AFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCG 600 Query: 601 RRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGL 660 RRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGL Sbjct: 601 RRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQTLQKERANSMVPSHSTGGL 660 Query: 661 TFSSPETSHICDRNLSISTKNSLRLRPSMRN 691 TFSSPETSHICDRNLSISTKNSLRLRPSMRN Sbjct: 661 TFSSPETSHICDRNLSISTKNSLRLRPSMRN 691 >gi|218505674 exoribonuclease 2 isoform 2 [Homo sapiens] Length = 328 Score = 502 bits (1292), Expect = e-142 Identities = 245/246 (99%), Positives = 245/246 (99%) Query: 1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE Sbjct: 1 MATKRLARQLGLIRRKSIAPANGNLGRSKSKQLFDYLIVIDFESTCWNDGKHHHSQEIIE 60 Query: 61 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW Sbjct: 61 FPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFCMELTGIKQAQVDEGVPLKICLSQFCKW 120 Query: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI Sbjct: 121 IHKIQQQKNIIFATGISEPSASEVKLCAFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWI 180 Query: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR Sbjct: 181 DLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITR 240 Query: 241 SLNKVP 246 SLNK P Sbjct: 241 SLNKGP 246 >gi|31543184 three prime histone mRNA exonuclease 1 [Homo sapiens] Length = 349 Score = 139 bits (349), Expect = 1e-32 Identities = 76/212 (35%), Positives = 120/212 (56%), Gaps = 17/212 (8%) Query: 34 FDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSEFC 93 +DY+ +IDFE+TC EIIEFP VLLNT T +I+ FQ YV+P+ + LS+FC Sbjct: 127 YDYICIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFC 186 Query: 94 MELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVTWS 153 + LTGI Q QVD L + W+ K+++ ++ K + +T Sbjct: 187 ISLTGITQDQVDRADTFPQVLKKVIDWM-KLKE-------------LGTKYKY-SLLTDG 231 Query: 154 DWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYR--RKPKGLSGALQEVGIEFSGR 211 WD+ L +C+ +L P F WI++R +Y FY+ R L+ L+++G+++ GR Sbjct: 232 SWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTIMLEKLGMDYDGR 291 Query: 212 EHSGLDDSRNTALLAWKMIRDGCVMKITRSLN 243 H GLDDS+N A +A +M++DGC ++I ++ Sbjct: 292 PHCGLDDSKNIARIAVRMLQDGCELRINEKMH 323 >gi|74136559 prion protein interacting protein [Homo sapiens] Length = 337 Score = 124 bits (310), Expect = 4e-28 Identities = 78/209 (37%), Positives = 108/209 (51%), Gaps = 17/209 (8%) Query: 32 QLFDYLIVIDFESTCWNDGKHHHSQEIIEFPAVLLNTSTGQIDSEFQAYVQPQEHPILSE 91 Q + Y +V+DFE+TC D H QEIIEFP + LN T +I+S F YVQP HP L+ Sbjct: 141 QRYHYFLVLDFEATC--DKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTP 198 Query: 92 FCMELTGIKQAQVDEGVPLKICLSQFCKWIHKIQQQKNIIFATGISEPSASEVKLCAFVT 151 FC ELTGI QA VD L+ L + +W+ K G+ +P+ + FVT Sbjct: 199 FCTELTGIIQAMVDGQPSLQQVLERVDEWMAK----------EGLLDPNVKSI----FVT 244 Query: 152 WSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPK-GLSGALQEVGIEFSG 210 DWDL V L +C+ L + WI+L+ Y PK GL + + ++ G Sbjct: 245 CGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIG 304 Query: 211 REHSGLDDSRNTALLAWKMIRDGCVMKIT 239 R HSG+DD +N A + + G + K T Sbjct: 305 RPHSGIDDCKNIANIMKTLAYRGFIFKQT 333 >gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens] Length = 605 Score = 46.2 bits (108), Expect = 1e-04 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Query: 595 PLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKWEQ 641 P C G+RS V GPN+GK F+ CP+GK K C +F+W + Sbjct: 552 PFCNHGKRSTMKTVLKIGPNNGKNFFVCPLGK----EKQCNFFQWAE 594 Score = 44.7 bits (104), Expect = 3e-04 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 13/99 (13%) Query: 542 FPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLC-KCG 600 F PA K+P T P C+P S+S + +N+ + ++ P C K Sbjct: 460 FSPAHKKPKTAQYSSPELKSCNPGYSNSELQ--------INMTDGPRTLNPDSPRCSKHN 511 Query: 601 RRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKW 639 R VV +G N G+ FY CP+ + + CG+F+W Sbjct: 512 RLCILRVVRKDGENKGRQFYACPLPREAQ----CGFFEW 546 >gi|110347443 TATA element modulatory factor 1 [Homo sapiens] Length = 1093 Score = 40.4 bits (93), Expect = 0.006 Identities = 41/188 (21%), Positives = 79/188 (42%), Gaps = 17/188 (9%) Query: 291 EKVQMKSICANSPIKAQQDQLQVKNNIKASLHNVKSSLP-----LFNTKSSTSVGQLQSP 345 + +Q + + P K+Q+ + +VK+++ SLH +S P S G+ + Sbjct: 107 QTIQKSPVVSKPPAKSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAA 166 Query: 346 TLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSDLEMSSTLDCLPVL 405 +SP + +GK+E T +K S + V + + + + +E S + Sbjct: 167 GTSSP---KTEGKHE----ETVNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLT 219 Query: 406 ADWEDVVLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETP 465 A+ +D+ L P Q E+ P S +F+SG ++E+ HE+ Sbjct: 220 AETKDIALEPKEQKHEDRQSNTP---SPPVSTFSSG--TSTTSDIEVLDHESVISESSAS 274 Query: 466 QKSETSKS 473 + ET+ S Sbjct: 275 SRQETTDS 282 >gi|10835218 topoisomerase (DNA) III alpha [Homo sapiens] Length = 1001 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 583 LQEPWKSGKMTPPLCKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKW 639 L P +G+ C CG+ + L V GPN G+ F+ C N C +F W Sbjct: 799 LPPPTAAGESNSVTCNCGQEAVLLTVRKEGPNRGRQFFKC-------NGGSCNFFLW 848 Score = 35.8 bits (81), Expect = 0.14 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Query: 597 CKCGRRSKRLVVSNNGPNHGKVFYCCPIGKYQENRKCCGYFKW 639 C C + S V +GPN G+ F+ C + Q+ CG+F+W Sbjct: 897 CLCSQPSVTRTVQKDGPNKGRQFHTCAKPREQQ----CGFFQW 935 >gi|118600981 jumonji domain containing 1C isoform a [Homo sapiens] Length = 2540 Score = 34.3 bits (77), Expect = 0.40 Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 36/279 (12%) Query: 283 PKNIINPHEKVQMKSICA-NSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTS--- 338 PK +I+ ++ + NS Q ++ N+ S H++ ++ L K + Sbjct: 506 PKCVIDITNDTNLEKVAQENSSTFGLQTLQKMDPNVSDSKHSIANAKFLETAKKDSDQSW 565 Query: 339 VGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSD------ 392 V + L N+HL + S + S L VS +H S Sbjct: 566 VSDVVKVDLTQSSVTNASSGNDHLNMEKEKYVSYI-SPLSAVSVMEDKLHKRSPPPETIK 624 Query: 393 LEMSSTLDCLPVLADWEDVVLLPA-SQPEENVDCTVPISDSDLEISFNSGERLMVLKELE 451 ++++++D + + V+ P + ++V +S +GER + K Sbjct: 625 SKLNTSVDTHKIKSSPSPEVVKPKITHSPDSVKSKATYVNSQA-----TGERRLANKIEH 679 Query: 452 MSSHENFGDIEETPQKSETSKS--IVYKSPHTTIYNVKEAKDP---GSD---------IS 497 S +F I ET+KS I+ K+ H T+Y +DP GS+ +S Sbjct: 680 ELSRCSFHPIPTRSSTLETTKSPLIIDKNEHFTVY-----RDPALIGSETGANHISPFLS 734 Query: 498 AFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNP 536 P H SS +N HP + LL+G + + P Sbjct: 735 QHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP 773 >gi|68342036 jumonji domain containing 1C isoform b [Homo sapiens] Length = 2303 Score = 34.3 bits (77), Expect = 0.40 Identities = 60/279 (21%), Positives = 106/279 (37%), Gaps = 36/279 (12%) Query: 283 PKNIINPHEKVQMKSICA-NSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTS--- 338 PK +I+ ++ + NS Q ++ N+ S H++ ++ L K + Sbjct: 287 PKCVIDITNDTNLEKVAQENSSTFGLQTLQKMDPNVSDSKHSIANAKFLETAKKDSDQSW 346 Query: 339 VGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVLVSTTVPTVHHVSD------ 392 V + L N+HL + S + S L VS +H S Sbjct: 347 VSDVVKVDLTQSSVTNASSGNDHLNMEKEKYVSYI-SPLSAVSVMEDKLHKRSPPPETIK 405 Query: 393 LEMSSTLDCLPVLADWEDVVLLPA-SQPEENVDCTVPISDSDLEISFNSGERLMVLKELE 451 ++++++D + + V+ P + ++V +S +GER + K Sbjct: 406 SKLNTSVDTHKIKSSPSPEVVKPKITHSPDSVKSKATYVNSQA-----TGERRLANKIEH 460 Query: 452 MSSHENFGDIEETPQKSETSKS--IVYKSPHTTIYNVKEAKDP---GSD---------IS 497 S +F I ET+KS I+ K+ H T+Y +DP GS+ +S Sbjct: 461 ELSRCSFHPIPTRSSTLETTKSPLIIDKNEHFTVY-----RDPALIGSETGANHISPFLS 515 Query: 498 AFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNP 536 P H SS +N HP + LL+G + + P Sbjct: 516 QHPFPLHSSSHRTCLNPGTHHPALTPAPHLLAGSSSQTP 554 >gi|33383237 minichromosome maintenance complex component 10 isoform 1 [Homo sapiens] Length = 875 Score = 33.5 bits (75), Expect = 0.68 Identities = 57/215 (26%), Positives = 81/215 (37%), Gaps = 37/215 (17%) Query: 405 LADWEDVVLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFG--DIE 462 L D E+V PASQ EN P + + + E L L+E + E I+ Sbjct: 84 LTDEEEV---PASQSTENRVLPAPAPRRE-KTNEELQEELRNLQEQMKALQEQLKVTTIK 139 Query: 463 ETPQKSETSKSIVYKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVL 522 +T + KS V KSP P K R+ + L Sbjct: 140 QTASPARLQKSPVEKSPR---------------------PPLKERRVQRIQESTCFSAEL 178 Query: 523 GKHPLLSGGTKRNPCSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVN 582 L TKR +P+A PP K + TS+ P+++ S R PS +T Sbjct: 179 DVPALPR--TKRVARTPKASPPDPKSS----SSRMTSAPSQPLQTIS-RNKPSGITRGQI 231 Query: 583 LQEPWKSGKMTPPLCK---CGRRSKRLVVSNNGPN 614 + P SG+ T P+C G R +R VS+ N Sbjct: 232 VGTPGSSGETTQPICVEAFSGLRLRRPRVSSTEMN 266 >gi|33383235 minichromosome maintenance complex component 10 isoform 2 [Homo sapiens] Length = 874 Score = 33.1 bits (74), Expect = 0.88 Identities = 56/213 (26%), Positives = 86/213 (40%), Gaps = 34/213 (15%) Query: 405 LADWEDVVLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEET 464 L D E+V PASQ EN P + + + E L L+E + E ++ T Sbjct: 84 LTDEEEV---PASQSTENRVLPAPAPRRE-KTNEELQEELRNLQEQMKALQEQ---LKVT 136 Query: 465 PQKSETSKSIVYKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGK 524 K S + + KSP K P + ++ + ST +A + P + Sbjct: 137 TIKQTASPARLQKSPE---------KSPRPPLKERRVQRIQESTC--FSAELDVPAL--- 182 Query: 525 HPLLSGGTKRNPCSPQAFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQ 584 TKR +P+A PP K + TS+ P+++ S R PS +T + Sbjct: 183 -----PRTKRVARTPKASPPDPKSS----SSRMTSAPSQPLQTIS-RNKPSGITRGQIVG 232 Query: 585 EPWKSGKMTPPLCK---CGRRSKRLVVSNNGPN 614 P SG+ T P+C G R +R VS+ N Sbjct: 233 TPGSSGETTQPICVEAFSGLRLRRPRVSSTEMN 265 >gi|24497513 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 32.7 bits (73), Expect = 1.2 Identities = 26/112 (23%), Positives = 48/112 (42%) Query: 500 KLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQPFTIHEEKPTS 559 K E + ++A S P LG+ PL + P +PQ PA + P P Sbjct: 63 KAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPP 122 Query: 560 SDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRSKRLVVSNN 611 S SP +++S P+ + L P + ++ P + + + +K+ S++ Sbjct: 123 SSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS 174 >gi|13562112 homeobox A3 isoform a [Homo sapiens] Length = 443 Score = 32.7 bits (73), Expect = 1.2 Identities = 26/112 (23%), Positives = 48/112 (42%) Query: 500 KLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQPFTIHEEKPTS 559 K E + ++A S P LG+ PL + P +PQ PA + P P Sbjct: 63 KAHELSEACLRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPTPAAPPPP 122 Query: 560 SDCSPVRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRSKRLVVSNN 611 S SP +++S P+ + L P + ++ P + + + +K+ S++ Sbjct: 123 SSASPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSS 174 >gi|7657218 bromodomain-containing protein 4 isoform short [Homo sapiens] Length = 722 Score = 32.7 bits (73), Expect = 1.2 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 412 VLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELE---MSSHENFGDIEETPQKS 468 V+ P S + + D + SDSD + ER L EL+ + HE + + Q Sbjct: 479 VVAPPSSSDSSSDSS---SDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNK 535 Query: 469 ETSKSIVYKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLL 528 K K + KE + A + P K+ N N+N+S Sbjct: 536 PKKKEKDKKEKKKEKHKRKEEVEENKKSKAKEPPPKKTKKNNSSNSNVS----------- 584 Query: 529 SGGTKRNPCSPQAFPPA--------KKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTS 579 K+ P ++ PP K +P + E++ S D + + R+ I+ S Sbjct: 585 ----KKEPAPMKSKPPPTYESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQS 639 >gi|19718731 bromodomain-containing protein 4 isoform long [Homo sapiens] Length = 1362 Score = 32.7 bits (73), Expect = 1.2 Identities = 39/179 (21%), Positives = 65/179 (36%), Gaps = 29/179 (16%) Query: 412 VLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELE---MSSHENFGDIEETPQKS 468 V+ P S + + D + SDSD + ER L EL+ + HE + + Q Sbjct: 479 VVAPPSSSDSSSDSS---SDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNK 535 Query: 469 ETSKSIVYKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLL 528 K K + KE + A + P K+ N N+N+S Sbjct: 536 PKKKEKDKKEKKKEKHKRKEEVEENKKSKAKEPPPKKTKKNNSSNSNVS----------- 584 Query: 529 SGGTKRNPCSPQAFPPA--------KKQPFTIHEEKPTSSDCSPVRSSSWRRLPSILTS 579 K+ P ++ PP K +P + E++ S D + + R+ I+ S Sbjct: 585 ----KKEPAPMKSKPPPTYESEEEDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQS 639 >gi|18375507 apurinic/apyrimidinic endonuclease 2 [Homo sapiens] Length = 518 Score = 32.7 bits (73), Expect = 1.2 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 587 WKS---GKMTPPLCKCGRRSKRLV--VSNNGPNHGKVFYCC--PIGKYQENRKCCGYFKW 639 WKS G + PLC G R ++ V GPN G+ FY C P G + C +F W Sbjct: 456 WKSVLAGPLRTPLCG-GHREPCVMRTVKKPGPNLGRRFYMCARPRGPPTDPSSRCNFFLW 514 Query: 640 EQ 641 + Sbjct: 515 SR 516 >gi|145309302 cell division cycle 2-like 5 isoform 1 [Homo sapiens] Length = 1512 Score = 32.7 bits (73), Expect = 1.2 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 437 SFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKS--IVYKSPHTTIYNVKEAKDPGS 494 S + G R SS D + ++++SK YK P K ++ + Sbjct: 252 SSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPP------KAYREDKT 305 Query: 495 DISAFKLPEHKSSTFNRVNANMSH----PLVLGKHPLLSGG-----TKRNPCSPQAFPPA 545 + A++ S R ++ +SH L K P +GG ++R P SP + Sbjct: 306 EPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRR 365 Query: 546 KKQPFTIHEEKPTSSDCSP--VRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRS 603 + ++ H D SP SSSWRR S + L+ KS +P + R Sbjct: 366 RSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPV--LRRSGKSRSRSPYSSRHSRSR 423 Query: 604 KRLVVSNNGPNHGKV 618 R +S + H + Sbjct: 424 SRHRLSRSRSRHSSI 438 >gi|145309300 cell division cycle 2-like 5 isoform 2 [Homo sapiens] Length = 1452 Score = 32.7 bits (73), Expect = 1.2 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 21/195 (10%) Query: 437 SFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKS--IVYKSPHTTIYNVKEAKDPGS 494 S + G R SS D + ++++SK YK P K ++ + Sbjct: 252 SSSGGRRKSASATSSSSSSRKDRDSKAHRSRTKSSKEPPSAYKEPP------KAYREDKT 305 Query: 495 DISAFKLPEHKSSTFNRVNANMSH----PLVLGKHPLLSGG-----TKRNPCSPQAFPPA 545 + A++ S R ++ +SH L K P +GG ++R P SP + Sbjct: 306 EPKAYRRRRSLSPLGGRDDSPVSHRASQSLRSRKSPSPAGGGSSPYSRRLPRSPSPYSRR 365 Query: 546 KKQPFTIHEEKPTSSDCSP--VRSSSWRRLPSILTSTVNLQEPWKSGKMTPPLCKCGRRS 603 + ++ H D SP SSSWRR S + L+ KS +P + R Sbjct: 366 RSPSYSRHSSYERGGDVSPSPYSSSSWRRSRSPYSPV--LRRSGKSRSRSPYSSRHSRSR 423 Query: 604 KRLVVSNNGPNHGKV 618 R +S + H + Sbjct: 424 SRHRLSRSRSRHSSI 438 >gi|120953251 neuron navigator 3 [Homo sapiens] Length = 2363 Score = 32.3 bits (72), Expect = 1.5 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 23/182 (12%) Query: 284 KNIINPHEKVQMK----SICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSV 339 K+++ P EK + +C P+K ++DQ+ K S + S +P K S + Sbjct: 460 KSLLQPKEKEEKNRDKNKVCTEKPVKEEKDQVTEMAPKKTS--KIASLIP----KGSKTT 513 Query: 340 GQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVLVSTT----VPTVHHVSDLEM 395 + + S + K G T S ST E TT ++ +E Sbjct: 514 AAKKESLIPSSSGIPKPGSKVPTVKQTISPGSTASKESEKFRTTKGSPSQSLSKPITMEK 573 Query: 396 SSTLDCLPVLADWEDVVLLPASQPEENVDCTVPISDSDLEISFNSGERLMVLKELEMSSH 455 +S C L E A Q + CT+ ++ S + ++G + L + + SH Sbjct: 574 ASASSCPAPLEGRE------AGQASPSGSCTMTVAQSSGQ---STGNGAVQLPQQQQHSH 624 Query: 456 EN 457 N Sbjct: 625 PN 626 >gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 [Homo sapiens] Length = 2191 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 491 DPGSDISAFKLPEHKSSTFNR-VNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQP 549 DP SD+S P+ S T N MS P V+G+ P ++P P +P Sbjct: 1180 DPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPY---EPNKDPFGGMRKVPGSSEP 1236 Query: 550 FTIHEEKPTSS 560 F + P SS Sbjct: 1237 FMTQGQMPNSS 1247 >gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo sapiens] Length = 2231 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 491 DPGSDISAFKLPEHKSSTFNR-VNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQP 549 DP SD+S P+ S T N MS P V+G+ P ++P P +P Sbjct: 1220 DPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPY---EPNKDPFGGMRKVPGSSEP 1276 Query: 550 FTIHEEKPTSS 560 F + P SS Sbjct: 1277 FMTQGQMPNSS 1287 >gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 [Homo sapiens] Length = 2178 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 491 DPGSDISAFKLPEHKSSTFNR-VNANMSHPLVLGKHPLLSGGTKRNPCSPQAFPPAKKQP 549 DP SD+S P+ S T N MS P V+G+ P ++P P +P Sbjct: 1167 DPFSDVSDSSFPKRNSMTPNAPYQQGMSMPDVMGRMPY---EPNKDPFGGMRKVPGSSEP 1223 Query: 550 FTIHEEKPTSS 560 F + P SS Sbjct: 1224 FMTQGQMPNSS 1234 >gi|46195763 metastasis suppressor 1-like [Homo sapiens] Length = 747 Score = 31.6 bits (70), Expect = 2.6 Identities = 67/313 (21%), Positives = 117/313 (37%), Gaps = 46/313 (14%) Query: 318 KASLHNVKSSLPL---FNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVG 374 +A ++++KSS P+ FN+K++ QL++ L + ++ K +A NT+ +G Sbjct: 16 QAIVNDMKSSYPIWEDFNSKATKLHSQLRTTVLAAVAFLDAFQKVADMATNTRGATRDIG 75 Query: 375 SELVLVSTTVPTVHHVSDLEMSSTLDCL--PV---LADWEDVVLLPASQPEENVDCTVPI 429 S L + ++ ++ L+ L P+ + DW+ A+Q ++ D Sbjct: 76 SALTRMCMRHRSIETKLRQFTNALLESLINPLQERIEDWKKA----ANQLDK--DHAKEY 129 Query: 430 SDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPHTTIYNVKEA 489 + EI S + L + K+ + E G + PQ + + +Y + E Sbjct: 130 KRARHEIKKKSSDTLKLQKK---ARKELLGKGDLQPQLDSALQDV------NDMYLLLEE 180 Query: 490 KDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRN---------PCSPQ 540 + + A + TF P+V G+ +L T P Sbjct: 181 TEKQAVRRALIEERGRFCTF----ITFLQPVVNGELTMLGEITHLQGIIDDLVVLTAEPH 236 Query: 541 AFPPAKKQPFT---------IHEEKPTSSDCSPVRSSSWRRLPSILTSTVNLQEPWKSGK 591 PPA +Q ++ P+S S R SS PS +S PW G Sbjct: 237 KLPPASEQVIKDLKGSDYSWSYQTPPSSPSSSSSRKSSMCSAPSSSSSAKGGGAPWPGGA 296 Query: 592 MT-PPLCKCGRRS 603 T P C RS Sbjct: 297 QTYSPSSTCRYRS 309 >gi|30520335 WD repeat domain 49 [Homo sapiens] Length = 697 Score = 31.6 bits (70), Expect = 2.6 Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 18/125 (14%) Query: 232 DGCVMKITRSLNKVPTK--KNFSILARNLNTIQVEEMSACNISIQGPSIYNKEPKNIINP 289 + C+ R N V ++ K S+ ++ + + E S N + S YN P IN Sbjct: 523 ENCLFLPKRDTNLVESEIQKEISLFSKEESCLDPTEHSLLNKKNKDDSTYNVRPSEDINL 582 Query: 290 HEKVQMKSICANSPIKAQQDQLQVKNNIKASLHNVKSSLPLFNTKSSTSVGQLQS-PTLN 348 K + +S C K ++ K+ F+T S ++G L+ P +N Sbjct: 583 DIKYKERSTCMKETQKPYYGEVIKKS---------------FSTFRSLNIGALEELPEVN 627 Query: 349 SPIYM 353 P ++ Sbjct: 628 KPAFL 632 >gi|151301228 formin binding protein 3 [Homo sapiens] Length = 930 Score = 31.2 bits (69), Expect = 3.4 Identities = 42/182 (23%), Positives = 66/182 (36%), Gaps = 31/182 (17%) Query: 318 KASLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSEL 377 K++LH + + + T+ PT P M E A + A+ + Sbjct: 206 KSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAA 265 Query: 378 VL-----------VSTTVPTVHHVSDLEMSSTLDCLPVLADWEDVVLLPASQPEENVDCT 426 VS TVP V + +T+ D E+ V + +++ + + T Sbjct: 266 AANANASTSASNTVSGTVPVVPEPEVTSIVATV------VDNENTVTI-STEEQAQLTST 318 Query: 427 VPISDSDLEISFNSGERLMVLKELEMSSHENFGDIEETPQKSETSKSIVYKSPHTTIYNV 486 I D +E+S N+GE E S E D TP+K E K T +N Sbjct: 319 PAIQDQSVEVSSNTGE--------ETSKQETVADF--TPKKEEEESQPAKK---TYTWNT 365 Query: 487 KE 488 KE Sbjct: 366 KE 367 >gi|13540590 family with sequence similarity 117, member A [Homo sapiens] Length = 453 Score = 30.8 bits (68), Expect = 4.4 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 11/94 (11%) Query: 487 KEAKDPGSDISAF-KLPEHKSSTFNRVNA-----NMSHPLVLGKHPLLSGGTKRNPCSPQ 540 +EA PG D++ P+ FN + N+ PL G + NP SP Sbjct: 351 EEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVNLMKPLFPGMG-FIFRNCPSNPGSP- 408 Query: 541 AFPPAKKQPFTIHEEKPTSSDCSPVRSSSWRRLP 574 PPA +P + P +S SP+ W+R P Sbjct: 409 -LPPASPRPPP--RKDPEASKASPLPFEPWQRTP 439 >gi|239745153 PREDICTED: similar to Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 655 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 617 KVFYCCPIGKYQENRKCCGYFKWEQTLQ-KERANSMVPSHSTGGLTFSSPETSHICDRNL 675 K F + Y ENRK G +W++ +E +S S +TF+ P+ I D + Sbjct: 62 KFFQLSEMEAYLENRKRRGTKRWDEDDDLEESEDSKQCKESLKRVTFTLPDDEAIEDAGV 121 Query: 676 SISTKNSLRLRPSMR 690 S KNS ++ S + Sbjct: 122 SHVKKNSDEVKSSFK 136 >gi|239745127 PREDICTED: similar to Putative golgin subfamily A member 6-like protein 6 [Homo sapiens] Length = 655 Score = 30.4 bits (67), Expect = 5.7 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 617 KVFYCCPIGKYQENRKCCGYFKWEQTLQ-KERANSMVPSHSTGGLTFSSPETSHICDRNL 675 K F + Y ENRK G +W++ +E +S S +TF+ P+ I D + Sbjct: 62 KFFQLSEMEAYLENRKRRGTKRWDEDDDLEESEDSKQCKESLKRVTFTLPDDEAIEDAGV 121 Query: 676 SISTKNSLRLRPSMR 690 S KNS ++ S + Sbjct: 122 SHVKKNSDEVKSSFK 136 >gi|66933005 calnexin precursor [Homo sapiens] Length = 592 Score = 30.4 bits (67), Expect = 5.7 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 476 YKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRN 535 +K+P T IY K AK P +D+ + + K+ + + + +L +++ G N Sbjct: 206 HKNPKTGIYEEKHAKRPDADLKTY-FTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN 264 Query: 536 PCSPQAFP------PAKKQPFTIHEEKPTSSDCSPVRSSSW 570 +P P P ++P +E+P D V+ W Sbjct: 265 DMTPPVNPSREIEDPEDRKP-EDWDERPKIPDPEAVKPDDW 304 >gi|10716563 calnexin precursor [Homo sapiens] Length = 592 Score = 30.4 bits (67), Expect = 5.7 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 8/101 (7%) Query: 476 YKSPHTTIYNVKEAKDPGSDISAFKLPEHKSSTFNRVNANMSHPLVLGKHPLLSGGTKRN 535 +K+P T IY K AK P +D+ + + K+ + + + +L +++ G N Sbjct: 206 HKNPKTGIYEEKHAKRPDADLKTY-FTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLN 264 Query: 536 PCSPQAFP------PAKKQPFTIHEEKPTSSDCSPVRSSSW 570 +P P P ++P +E+P D V+ W Sbjct: 265 DMTPPVNPSREIEDPEDRKP-EDWDERPKIPDPEAVKPDDW 304 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.130 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,291,648 Number of Sequences: 37866 Number of extensions: 1250450 Number of successful extensions: 3525 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 36 Number of HSP's that attempted gapping in prelim test: 3500 Number of HSP's gapped (non-prelim): 57 length of query: 691 length of database: 18,247,518 effective HSP length: 109 effective length of query: 582 effective length of database: 14,120,124 effective search space: 8217912168 effective search space used: 8217912168 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.