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Search of human proteins with 21735594
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens] 495 e-140
gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens] 479 e-136
gi|14150141 programmed cell death 2-like [Homo sapiens] 55 5e-08
gi|13489073 egl nine homolog 1 [Homo sapiens] 42 4e-04
gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Hom... 39 0.004
gi|38505161 tudor domain containing 1 [Homo sapiens] 39 0.004
gi|156616308 SET and MYND domain containing 4 [Homo sapiens] 36 0.031
gi|38016945 deformed epidermal autoregulatory factor 1 [Homo sap... 35 0.041
gi|239749940 PREDICTED: similar to deformed epidermal autoregula... 35 0.041
gi|28872803 myeloid translocation gene on chromosome 16 isoform ... 35 0.041
gi|28872805 myeloid translocation gene on chromosome 16 isoform ... 35 0.041
gi|28329422 acute myelogenous leukemia 1 translocation 1 protein... 35 0.053
gi|28329419 acute myelogenous leukemia 1 translocation 1 protein... 35 0.053
gi|28329416 acute myelogenous leukemia 1 translocation 1 protein... 35 0.053
gi|4757916 acute myelogenous leukemia 1 translocation 1 protein ... 35 0.053
gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens] 35 0.069
gi|89353295 core-binding factor, runt domain, alpha subunit 2; t... 33 0.15
gi|74229008 core-binding factor, runt domain, alpha subunit 2; t... 33 0.15
gi|4826663 core-binding factor, runt domain, alpha subunit 2; tr... 33 0.15
gi|188035871 SET and MYND domain containing 2 [Homo sapiens] 33 0.15
gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens] 33 0.20
gi|239757471 PREDICTED: hypothetical protein [Homo sapiens] 32 0.34
gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo ... 32 0.34
gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo ... 32 0.34
gi|148612825 Rap GTPase interactor [Homo sapiens] 32 0.59
gi|239749777 PREDICTED: hypothetical protein [Homo sapiens] 31 1.00
gi|116235480 leucine zipper transcription regulator 2 [Homo sapi... 30 1.3
gi|45643129 guanine nucleotide binding protein-like 3 isoform 2 ... 30 1.7
gi|45643127 guanine nucleotide binding protein-like 3 isoform 2 ... 30 1.7
gi|45593130 guanine nucleotide binding protein-like 3 isoform 1 ... 30 1.7
>gi|21735594 programmed cell death 2 isoform 2 [Homo sapiens]
Length = 228
Score = 495 bits (1274), Expect = e-140
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF 60
MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF
Sbjct: 1 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF 60
Query: 61 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET 120
LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
Sbjct: 61 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET 120
Query: 121 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH 180
GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
Sbjct: 121 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH 180
Query: 181 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQDFIH 228
IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQDFIH
Sbjct: 181 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQDFIH 228
>gi|21735592 programmed cell death 2 isoform 1 [Homo sapiens]
Length = 344
Score = 479 bits (1233), Expect = e-136
Identities = 220/225 (97%), Positives = 223/225 (99%)
Query: 1 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF 60
MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF
Sbjct: 1 MAAAGARPVELGFAESAPAWRLRSEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLSF 60
Query: 61 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET 120
LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET
Sbjct: 61 LLQVYAPLPGRPDAFHRCIFLFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPET 120
Query: 121 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH 180
GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH
Sbjct: 121 GESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDHLDH 180
Query: 181 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGKQFQD 225
IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMG+ ++
Sbjct: 181 IIPDHNFLFPEFEIVIETEDEIMPEVVEKEDYSEIIGSMGEALEE 225
>gi|14150141 programmed cell death 2-like [Homo sapiens]
Length = 358
Score = 55.1 bits (131), Expect = 5e-08
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 9/75 (12%)
Query: 29 SKVGGRPAWLGAAGLPGPQALACELCGRPLSFLLQVYAPLPGRPDAFHRCIFLFCCREQP 88
SK+GG P L P P C+ CG+PL+ ++QVY PL G P FHR + +F C
Sbjct: 30 SKLGGIPDALPTVAAPRP---VCQRCGQPLALVVQVYCPLEGSP--FHRLLHVFACACPG 84
Query: 89 CCAG----LRVFRNQ 99
C G +VFR+Q
Sbjct: 85 CSTGGARSWKVFRSQ 99
>gi|13489073 egl nine homolog 1 [Homo sapiens]
Length = 426
Score = 42.0 bits (97), Expect = 4e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 135 CRVCGCL-GPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC 172
C +CG + CSRC ++YC KEHQ DW+ HK C
Sbjct: 21 CELCGKMENLLRCSRCRSSFYCCKEHQRQDWK-KHKLVC 58
>gi|226246519 zinc finger, MYND-type containing 12 isoform 1 [Homo
sapiens]
Length = 365
Score = 38.9 bits (89), Expect = 0.004
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC 172
C VC + C+ C YYC HQ DW H++ C
Sbjct: 17 CEVCEAPAERVCAACTVTYYCGVVHQKADWDSIHEKIC 54
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 38.9 bits (89), Expect = 0.004
Identities = 29/79 (36%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC--AQPDHLDHIIPDHNFLFPEF 192
C CG G CS+C + YYCS Q DW H C QP NF E
Sbjct: 170 CHRCGLFGSLRCSQCKQTYYCSTACQRRDWS-AHSIVCRPVQP----------NFHKLEN 218
Query: 193 EIVIETEDEIMPEVVEKED 211
+ IET+D EV K D
Sbjct: 219 KSSIETKD---VEVNNKSD 234
>gi|156616308 SET and MYND domain containing 4 [Homo sapiens]
Length = 804
Score = 35.8 bits (81), Expect = 0.031
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 100 LPRKNDFYSYEPPSENPPPETG--ESVCLQLKSGAHLCRVC--GCLGPKTCSRCHKAYYC 155
L +++ F S P E PPP G ++ +G C C L C C A YC
Sbjct: 259 LVQEDAFVSVLNPGELPPPHHGLDSKWDTRVTNGDLYCHRCLKHTLATVPCDGCSYAKYC 318
Query: 156 SKEHQTLDWRLGHKQAC 172
S+E W L H+ C
Sbjct: 319 SQECLQQAWELYHRTEC 335
>gi|38016945 deformed epidermal autoregulatory factor 1 [Homo
sapiens]
Length = 565
Score = 35.4 bits (80), Expect = 0.041
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
C CG C+ CHK YCS Q DW+ H+ C Q
Sbjct: 504 CVNCGREAMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 542
>gi|239749940 PREDICTED: similar to deformed epidermal
autoregulatory factor 1 [Homo sapiens]
Length = 426
Score = 35.4 bits (80), Expect = 0.041
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
C CG C+ CHK YCS Q DW+ H+ C Q
Sbjct: 365 CVNCGREAMSECTGCHKVNYCSTFCQRKDWK-DHQHICGQ 403
>gi|28872803 myeloid translocation gene on chromosome 16 isoform
MTG16a [Homo sapiens]
Length = 653
Score = 35.4 bits (80), Expect = 0.041
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 540 EDALTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWE-KHHHVCGQ 594
>gi|28872805 myeloid translocation gene on chromosome 16 isoform
MTG16b [Homo sapiens]
Length = 567
Score = 35.4 bits (80), Expect = 0.041
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 454 EDALTVINQQEDSSESCWNCGRKASETCSGCNAARYCGSFCQHRDWE-KHHHVCGQ 508
>gi|28329422 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 35.0 bits (79), Expect = 0.053
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 462 EDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 516
>gi|28329419 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8c [Homo sapiens]
Length = 567
Score = 35.0 bits (79), Expect = 0.053
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 462 EDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 516
>gi|28329416 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8b [Homo sapiens]
Length = 604
Score = 35.0 bits (79), Expect = 0.053
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 499 EDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 553
>gi|4757916 acute myelogenous leukemia 1 translocation 1 protein
isoform MTG8a [Homo sapiens]
Length = 577
Score = 35.0 bits (79), Expect = 0.053
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 119 ETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
E +V Q + + C CG +TCS C+ A YC Q DW H C Q
Sbjct: 472 EDALAVINQQEDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWE-KHHHICGQ 526
>gi|37594444 zinc finger, MYND domain-containing 10 [Homo sapiens]
Length = 440
Score = 34.7 bits (78), Expect = 0.069
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQAC 172
C C K CSRC +YC +E Q W H + C
Sbjct: 394 CAYCSAEASKRCSRCQNEWYCCRECQVKHWE-KHGKTC 430
>gi|89353295 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1a [Homo sapiens]
Length = 575
Score = 33.5 bits (75), Expect = 0.15
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDH 177
C CG +TCS C+ A YC Q DW H + C Q H
Sbjct: 478 CWNCGRKASETCSGCNIARYCGSFCQHKDWE-RHHRLCGQNLH 519
>gi|74229008 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1c [Homo sapiens]
Length = 595
Score = 33.5 bits (75), Expect = 0.15
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDH 177
C CG +TCS C+ A YC Q DW H + C Q H
Sbjct: 498 CWNCGRKASETCSGCNIARYCGSFCQHKDWE-RHHRLCGQNLH 539
>gi|4826663 core-binding factor, runt domain, alpha subunit 2;
translocated to, 2 isoform MTGR1b [Homo sapiens]
Length = 604
Score = 33.5 bits (75), Expect = 0.15
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 135 CRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQPDH 177
C CG +TCS C+ A YC Q DW H + C Q H
Sbjct: 507 CWNCGRKASETCSGCNIARYCGSFCQHKDWE-RHHRLCGQNLH 548
>gi|188035871 SET and MYND domain containing 2 [Homo sapiens]
Length = 433
Score = 33.5 bits (75), Expect = 0.15
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 142 GPKTCSRCHKAYYCSKEHQTLDWRLGHKQACA 173
G C RC +A+YC+ E Q DW + HK C+
Sbjct: 61 GLSKCGRCKQAFYCNVECQKEDWPM-HKLECS 91
>gi|67782303 zinc finger, MYND domain containing 17 [Homo sapiens]
Length = 460
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 125 CLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQACAQ 174
C L SG +V + C RC YYC E Q DW H++ C +
Sbjct: 108 CRALPSGLSDSKVL-----RHCKRCRNVYYCGPECQKSDWP-AHRRVCQE 151
>gi|239757471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.34
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 24 SEQFPSKVGGRPAWLGAAGLPGPQALACE---LCGRPLSFLLQVYAPLPGRPDAFHRCIF 80
S + P + G WL ++ LP L E +C R Q+ + L G+P
Sbjct: 112 SRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPC------ 165
Query: 81 LFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCG 139
P C R F +PR + Y P+ NP +++CLQ + A VCG
Sbjct: 166 -------PLCCQSRAF--SVPRPPTAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCG 215
>gi|239751989 PREDICTED: hypothetical protein XP_002348071 [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.34
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 24 SEQFPSKVGGRPAWLGAAGLPGPQALACE---LCGRPLSFLLQVYAPLPGRPDAFHRCIF 80
S + P + G WL ++ LP L E +C R Q+ + L G+P
Sbjct: 112 SRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPC------ 165
Query: 81 LFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCG 139
P C R F +PR + Y P+ NP +++CLQ + A VCG
Sbjct: 166 -------PLCCQSRAF--SVPRPPTAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCG 215
>gi|239746474 PREDICTED: hypothetical protein XP_002343753 [Homo
sapiens]
Length = 217
Score = 32.3 bits (72), Expect = 0.34
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 24 SEQFPSKVGGRPAWLGAAGLPGPQALACE---LCGRPLSFLLQVYAPLPGRPDAFHRCIF 80
S + P + G WL ++ LP L E +C R Q+ + L G+P
Sbjct: 112 SRECPREPVGCCDWLYSSFLPILPGLVTEPMLVCCREWLTSHQITSELCGQPPC------ 165
Query: 81 LFCCREQPCCAGLRVFRNQLPRKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCG 139
P C R F +PR + Y P+ NP +++CLQ + A VCG
Sbjct: 166 -------PLCCQSRAF--SVPRPPTAFLYPGPNHNPITSCPKNLCLQDQVHATELGVCG 215
>gi|148612825 Rap GTPase interactor [Homo sapiens]
Length = 1075
Score = 31.6 bits (70), Expect = 0.59
Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 3 AAGARPVELGFAESAPAWRLR---SEQFPSKVGGRPAWLGAAGLPGPQALACELCGRPLS 59
A G LG A S+P RLR SE S V PA PGP A+ L P
Sbjct: 192 AKGTPTPALGDARSSPPPRLRRTVSETSLSPVNALPAAAQGPEEPGPDAMRYSLYQSPHL 251
Query: 60 FLLQVYA 66
LLQ Y+
Sbjct: 252 LLLQGYS 258
>gi|239749777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 686
Score = 30.8 bits (68), Expect = 1.00
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 35 PAWLGAAGLP---GPQALACELCGRPLSFLLQVYAPLPGRPDAFHRCIFLFCCREQPCCA 91
P WL A P P A A C +F Q ++ LP P F + + LF P C
Sbjct: 316 PPWLFALPQPWLFAPTAEAFCRCAAAAAFCPQSHSFLPSPPRLFAQPLQLFAPEATPFCP 375
Query: 92 GLRVF-RNQLPRKNDFYSYEPPSENPPPE 119
R F R+ PR+ F PPP+
Sbjct: 376 RHRGFLRHFTPRRCGFL--------PPPQ 396
>gi|116235480 leucine zipper transcription regulator 2 [Homo sapiens]
Length = 1060
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 32 GGRPAWLGAAGLPGPQALACELCGRP 57
GG A G GL GP++++ ELC P
Sbjct: 989 GGAAAGAGVGGLSGPESVSFELCSNP 1014
>gi|45643129 guanine nucleotide binding protein-like 3 isoform 2
[Homo sapiens]
Length = 537
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 FYSYEPPSENPPPETGESVCLQLKSGAHL 134
+Y + P S PPP ES+ + +KSG +L
Sbjct: 389 YYCHPPTSWTPPPYFNESIVVDMKSGFNL 417
>gi|45643127 guanine nucleotide binding protein-like 3 isoform 2
[Homo sapiens]
Length = 537
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 FYSYEPPSENPPPETGESVCLQLKSGAHL 134
+Y + P S PPP ES+ + +KSG +L
Sbjct: 389 YYCHPPTSWTPPPYFNESIVVDMKSGFNL 417
>gi|45593130 guanine nucleotide binding protein-like 3 isoform 1
[Homo sapiens]
Length = 549
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 106 FYSYEPPSENPPPETGESVCLQLKSGAHL 134
+Y + P S PPP ES+ + +KSG +L
Sbjct: 401 YYCHPPTSWTPPPYFNESIVVDMKSGFNL 429
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.141 0.475
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,664,202
Number of Sequences: 37866
Number of extensions: 673787
Number of successful extensions: 2362
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2323
Number of HSP's gapped (non-prelim): 53
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.