Guide to the Human Genome
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Name: LOC100287479 Sequence: fasta or formatted (217aa) NCBI GI: 239746474
Description:

PREDICTED: hypothetical protein XP_002343753

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           1
 C cysteine            6.5         14           2
 D aspartate           4.6         10           1
 E glutamate           4.1          9           2
 F phenylalanine       5.5         12           2
 G glycine             5.5         12           1
 H histidine           3.2          7           1
 I isoleucine          3.7          8           2
 K lysine              2.8          6           1
 L leucine             8.8         19           2
 M methionine          1.8          4           1
 N asparagine          1.8          4           1
 P proline            12.0         26           2
 Q glutamine           5.5         12           1
 R arginine            5.1         11           1
 S serine              8.3         18           2
 T threonine           6.9         15           2
 V valine              6.9         15           1
 W tryptophan          1.8          4           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343753 
LOC100293184          1.000   PREDICTED: hypothetical protein 
LOC100290867          1.000   PREDICTED: hypothetical protein XP_002348071 
PDCD2                 0.016   programmed cell death 2 isoform 2 
PDCD2                 0.016   programmed cell death 2 isoform 1 
C11orf9               0.013   hypothetical protein LOC745 isoform 2 
LOC100288531          0.011   PREDICTED: hypothetical protein XP_002343337 
ATP5S                 0.011   ATP synthase, H+ transporting, mitochondrial F0 comp...
DMRTC2                0.011   DMRT-like family C2 
ATP5S                 0.011   ATP synthase, H+ transporting, mitochondrial F0 comp...
ATP5S                 0.011   ATP synthase, H+ transporting, mitochondrial F0 comp...
LOC100288869          0.009   PREDICTED: hypothetical protein XP_002343771 
LOC100287524          0.009   PREDICTED: hypothetical protein XP_002342307 
SLC25A38              0.009   solute carrier family 25, member 38 
NCOA2                 0.009   nuclear receptor coactivator 2 
ADAM19                0.009   ADAM metallopeptidase domain 19 preproprotein 
PCLO                  0.007   piccolo isoform 2 
PCLO                  0.007   piccolo isoform 1 
C11orf9               0.007   hypothetical protein LOC745 isoform 1 
CCDC120               0.007   coiled-coil domain containing 120 isoform 3 
CCDC120               0.007   coiled-coil domain containing 120 isoform 4 
CCDC120               0.007   coiled-coil domain containing 120 isoform 2 
CCDC120               0.007   coiled-coil domain containing 120 isoform 1 
SIPA1                 0.007   signal-induced proliferation-associated protein 1 [...
SIPA1                 0.007   signal-induced proliferation-associated protein 1 [...
NID2                  0.007   nidogen 2 precursor 
KIAA1755              0.007   hypothetical protein LOC85449 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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