Guide to the Human Genome
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Name: PDCD2L Sequence: fasta or formatted (358aa) NCBI GI: 14150141
Description:

programmed cell death 2-like

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         31           2
 C cysteine            4.5         16           1
 D aspartate           7.0         25           2
 E glutamate           6.1         22           2
 F phenylalanine       4.2         15           1
 G glycine             7.3         26           2
 H histidine           2.0          7           1
 I isoleucine          3.1         11           2
 K lysine              3.6         13           1
 L leucine            10.9         39           2
 M methionine          1.7          6           1
 N asparagine          1.7          6           1
 P proline             8.1         29           2
 Q glutamine           6.4         23           2
 R arginine            4.2         15           1
 S serine              6.4         23           2
 T threonine           4.2         15           1
 V valine              5.6         20           2
 W tryptophan          2.0          7           1
 Y tyrosine            2.5          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   programmed cell death 2-like 
PDCD2                 0.103   programmed cell death 2 isoform 1 
PDCD2                 0.041   programmed cell death 2 isoform 2 
PRDM8                 0.014   PR domain containing 8 
PRDM8                 0.014   PR domain containing 8 
GJA5                  0.007   connexin 40 
GJA5                  0.007   connexin 40 
NOP14                 0.007   probable nucleolar complex protein 14 
HES3                  0.007   hairy and enhancer of split 3 
LOC388279             0.004   PREDICTED: hypothetical protein 
LOC100287777          0.004   PREDICTED: hypothetical protein XP_002342585 
SHROOM2               0.004   apical protein of Xenopus-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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