Guide to the Human Genome
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Name: TCL6 Sequence: fasta or formatted (119aa) NCBI GI: 21536344
Description:

T-cell leukemia/lymphoma 6 isoform TCL6c1

Referenced in:

T cells

Other entries for this name:
alt prot [141aa] T-cell leukemia/lymphoma 6 isoform TCL6a2
alt prot [141aa] T-cell leukemia/lymphoma 6 isoform TCL6a1
alt prot [141aa] T-cell leukemia/lymphoma 6 isoform TCL6a3
alt prot [105aa] T-cell leukemia/lymphoma 6 isoform TCL6b1
alt prot [163aa] T-cell leukemia/lymphoma 6 isoform TCL6d1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          7           1
 C cysteine            4.2          5           1
 D aspartate           3.4          4           1
 E glutamate           4.2          5           1
 F phenylalanine       3.4          4           2
 G glycine             5.0          6           2
 H histidine           8.4         10           1
 I isoleucine          2.5          3           2
 K lysine              5.9          7           1
 L leucine            10.9         13           2
 M methionine          1.7          2           1
 N asparagine          1.7          2           1
 P proline             4.2          5           1
 Q glutamine           3.4          4           1
 R arginine           10.9         13           2
 S serine             13.4         16           2
 T threonine           3.4          4           1
 V valine              0.8          1           1
 W tryptophan          3.4          4           1
 Y tyrosine            3.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia/lymphoma 6 isoform TCL6c1 
TCL6                  0.846   T-cell leukemia/lymphoma 6 isoform TCL6b1 
TCL6                  0.838   T-cell leukemia/lymphoma 6 isoform TCL6d1 
EDA2R                 0.026   X-linked ectodysplasin receptor 
NKTR                  0.026   natural killer-tumor recognition sequence 
LOC100292909          0.013   PREDICTED: hypothetical protein 
SLCO1C1               0.009   solute carrier organic anion transporter family, me...
SLCO1C1               0.009   solute carrier organic anion transporter family, memb...
LOC100170229          0.009   hypothetical protein LOC100170229 
TTLL8                 0.009   tubulin tyrosine ligase-like family, member 8 [Homo...
TAF2                  0.009   TBP-associated factor 2 
NR3C1                 0.004   nuclear receptor subfamily 3, group C, member 1 isof...
DSEL                  0.004   dermatan sulfate epimerase-like 
PLB1                  0.004   phospholipase B1 
MUC1                  0.004   mucin 1 isoform 8 precursor 
LOC100293412          0.004   PREDICTED: hypothetical protein 
TBC1D27               0.004   PREDICTED: TBC1 domain family, member 27 
LOC100290067          0.004   PREDICTED: hypothetical protein XP_002347479 
LOC100289251          0.004   PREDICTED: hypothetical protein XP_002343312 
PLA2G5                0.004   phospholipase A2, group V precursor 
PKHD1L1               0.004   fibrocystin L 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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