Guide to the Human Genome
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Name: TCL6 Sequence: fasta or formatted (141aa) NCBI GI: 10947107
Description:

T-cell leukemia/lymphoma 6 isoform TCL6a1

Referenced in:

T cells

Other entries for this name:
alt mRNA [141aa] T-cell leukemia/lymphoma 6 isoform TCL6a2
alt mRNA [141aa] T-cell leukemia/lymphoma 6 isoform TCL6a3
alt prot [105aa] T-cell leukemia/lymphoma 6 isoform TCL6b1
alt prot [119aa] T-cell leukemia/lymphoma 6 isoform TCL6c1
alt prot [163aa] T-cell leukemia/lymphoma 6 isoform TCL6d1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          5           2
 C cysteine            5.0          7           2
 D aspartate           5.7          8           1
 E glutamate           2.8          4           1
 F phenylalanine       4.3          6           2
 G glycine             5.7          8           1
 H histidine           2.8          4           1
 I isoleucine          3.5          5           1
 K lysine              8.5         12           2
 L leucine            12.1         17           2
 M methionine          2.8          4           1
 N asparagine          1.4          2           1
 P proline             9.2         13           1
 Q glutamine           5.7          8           2
 R arginine            6.4          9           1
 S serine              7.1         10           2
 T threonine           5.0          7           1
 V valine              6.4          9           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia/lymphoma 6 isoform TCL6a1 
TCL6                  1.000   T-cell leukemia/lymphoma 6 isoform TCL6a3 
TCL6                  1.000   T-cell leukemia/lymphoma 6 isoform TCL6a2 
AARS2                 0.019   alanyl-tRNA synthetase 2, mitochondrial 
ATP10B                0.011   ATPase, class V, type 10B 
RASAL2                0.007   RAS protein activator like 2 isoform 2 
BMF                   0.007   Bcl2 modifying factor isoform bmf-1 
BMF                   0.007   Bcl2 modifying factor isoform bmf-1 
COG7                  0.007   component of oligomeric golgi complex 7 
VWF                   0.004   von Willebrand factor preproprotein 
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.004   a disintegrin and metalloproteinase domain 15 isofor...
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containi...
STARD8                0.004   StAR-related lipid transfer (START) domain containin...
C8orf73               0.004   hypothetical protein LOC642475 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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