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Search of human proteins with 21450808
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
(221 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens] 443 e-125
gi|195539375 PARK2 co-regulated-like isoform 2 [Homo sapiens] 140 9e-34
gi|122939204 parkin co-regulated gene protein isoform 1 [Homo sa... 64 1e-10
gi|122939206 parkin co-regulated gene protein isoform 2 [Homo sa... 64 1e-10
gi|122939202 parkin co-regulated gene protein isoform 2 [Homo sa... 64 1e-10
gi|57222563 colonic and hepatic tumor over-expressed protein iso... 37 0.017
gi|57164942 colonic and hepatic tumor over-expressed protein iso... 37 0.017
gi|94536832 PAP associated domain containing 5 isoform b [Homo s... 33 0.19
gi|94536834 PAP associated domain containing 5 isoform a [Homo s... 33 0.19
gi|12232415 hypothetical protein LOC64762 [Homo sapiens] 32 0.56
gi|28559039 mediator complex subunit 1 [Homo sapiens] 30 1.6
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 30 2.1
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 30 2.1
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 30 2.1
gi|42733592 hypothetical protein LOC399693 [Homo sapiens] 29 2.8
gi|238776801 SVH protein isoform f [Homo sapiens] 29 3.6
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 29 3.6
gi|90903231 huntingtin [Homo sapiens] 28 4.7
gi|169178511 PREDICTED: similar to cofactor required for Sp1 tra... 28 4.7
gi|169178509 PREDICTED: similar to cofactor required for Sp1 tra... 28 4.7
gi|116089335 BR serine/threonine kinase 2 [Homo sapiens] 28 4.7
gi|28558979 mediator complex subunit 27 [Homo sapiens] 28 4.7
gi|209969838 transportin 2 (importin 3, karyopherin beta 2b) iso... 28 4.7
gi|209969836 transportin 2 (importin 3, karyopherin beta 2b) iso... 28 4.7
gi|48675813 transportin 2 (importin 3, karyopherin beta 2b) isof... 28 4.7
gi|24797065 zinc finger protein 212 [Homo sapiens] 28 4.7
gi|93102379 low density lipoprotein-related protein 1B precursor... 28 6.2
gi|227497884 brain-enriched guanylate kinase-associated protein ... 28 6.2
gi|13124765 brain-enriched guanylate kinase-associated protein [... 28 6.2
gi|207450721 ganglioside induced differentiation associated prot... 28 6.2
>gi|21450808 PARK2 co-regulated-like isoform 1 [Homo sapiens]
Length = 221
Score = 443 bits (1140), Expect = e-125
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD
Sbjct: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
Query: 61 KLNPKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITL 120
KLNPKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITL
Sbjct: 61 KLNPKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITL 120
Query: 121 AEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLN 180
AEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLN
Sbjct: 121 AEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLN 180
Query: 181 ALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSICC 221
ALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSICC
Sbjct: 181 ALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSICC 221
>gi|195539375 PARK2 co-regulated-like isoform 2 [Homo sapiens]
Length = 123
Score = 140 bits (353), Expect = 9e-34
Identities = 70/76 (92%), Positives = 70/76 (92%)
Query: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD
Sbjct: 1 MQKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSD 60
Query: 61 KLNPKTINPFGEQSRV 76
KLNPKTINP V
Sbjct: 61 KLNPKTINPVHSDDEV 76
Score = 114 bits (285), Expect = 7e-26
Identities = 62/81 (76%), Positives = 63/81 (77%), Gaps = 3/81 (3%)
Query: 144 LVKGAPEKAIPLLPRLIPVLKAAL---VHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL 200
L +PE A L PR L VHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL
Sbjct: 43 LSTSSPESARKLHPRPSDKLNPKTINPVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHL 102
Query: 201 LTSGSLSIIKSKIPTYCSICC 221
LTSGSLSIIKSKIPTYCSICC
Sbjct: 103 LTSGSLSIIKSKIPTYCSICC 123
>gi|122939204 parkin co-regulated gene protein isoform 1 [Homo
sapiens]
Length = 296
Score = 63.9 bits (154), Expect = 1e-10
Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 64 PKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEG 123
P F E+ P+AF Y +G P L H S +++ W+ E L + L +G
Sbjct: 56 PPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDG 115
Query: 124 LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALV 183
L E PY F +++G ++L G K +P+LP+LI +K AL + +V L L
Sbjct: 116 LCEMTFPYEFFARQGIHDMLEHGG--NKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQ 173
Query: 184 QLSV---VVGPSLNDHLKHLLTSGSLSIIKSKIPTY 216
L V +VG +L + + +L L+I K+ +Y
Sbjct: 174 HLVVSAEMVGKALVPYYRQILP--VLNIFKNMNGSY 207
>gi|122939206 parkin co-regulated gene protein isoform 2 [Homo
sapiens]
Length = 257
Score = 63.5 bits (153), Expect = 1e-10
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 64 PKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEG 123
P F E+ P+AF Y +G P L H S +++ W+ E L + L +G
Sbjct: 56 PPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDG 115
Query: 124 LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALV 183
L E PY F +++G ++L G K +P+LP+LI +K AL + +V L L
Sbjct: 116 LCEMTFPYEFFARQGIHDMLEHGG--NKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQ 173
Query: 184 QLSV---VVGPSLNDHLKHLL 201
L V +VG +L + + +L
Sbjct: 174 HLVVSAEMVGKALVPYYRQIL 194
>gi|122939202 parkin co-regulated gene protein isoform 2 [Homo
sapiens]
Length = 257
Score = 63.5 bits (153), Expect = 1e-10
Identities = 43/141 (30%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 64 PKTINPFGEQSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEG 123
P F E+ P+AF Y +G P L H S +++ W+ E L + L +G
Sbjct: 56 PPAAGAFKERPTKPTAFRKFYERGDFPIALEHDSKGNKIAWKVEIEKLDYHHYLPLFFDG 115
Query: 124 LRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALV 183
L E PY F +++G ++L G K +P+LP+LI +K AL + +V L L
Sbjct: 116 LCEMTFPYEFFARQGIHDMLEHGG--NKILPVLPQLIIPIKNALNLRNRQVICVTLKVLQ 173
Query: 184 QLSV---VVGPSLNDHLKHLL 201
L V +VG +L + + +L
Sbjct: 174 HLVVSAEMVGKALVPYYRQIL 194
>gi|57222563 colonic and hepatic tumor over-expressed protein
isoform b [Homo sapiens]
Length = 1972
Score = 36.6 bits (83), Expect = 0.017
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 134 VSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSL 193
+ KEG E+ + + P + L LK L S+ + ++ LN L QL+V +GP++
Sbjct: 876 IRKEGLDEVAGIINDAKFIQPNIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNI 935
Query: 194 NDHLKHL 200
H+K+L
Sbjct: 936 KQHVKNL 942
>gi|57164942 colonic and hepatic tumor over-expressed protein
isoform a [Homo sapiens]
Length = 2032
Score = 36.6 bits (83), Expect = 0.017
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 134 VSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSL 193
+ KEG E+ + + P + L LK L S+ + ++ LN L QL+V +GP++
Sbjct: 876 IRKEGLDEVAGIINDAKFIQPNIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNI 935
Query: 194 NDHLKHL 200
H+K+L
Sbjct: 936 KQHVKNL 942
>gi|94536832 PAP associated domain containing 5 isoform b [Homo
sapiens]
Length = 442
Score = 33.1 bits (74), Expect = 0.19
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 117 LITLAEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSD-DEVF 175
+I L + E K +F + G R L+K +K P+LP L+ VLK L+ D +EVF
Sbjct: 89 IIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK-YPVLPYLVLVLKQFLLQRDLNEVF 147
Query: 176 ERGLNA 181
G+ +
Sbjct: 148 TGGIGS 153
>gi|94536834 PAP associated domain containing 5 isoform a [Homo
sapiens]
Length = 489
Score = 33.1 bits (74), Expect = 0.19
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 117 LITLAEGLRETKHPYTFVSKEGFRELLLVKGAPEKAIPLLPRLIPVLKAALVHSD-DEVF 175
+I L + E K +F + G R L+K +K P+LP L+ VLK L+ D +EVF
Sbjct: 89 IIKLTDSFTEVKVDISFNVQNGVRAADLIKDFTKK-YPVLPYLVLVLKQFLLQRDLNEVF 147
Query: 176 ERGLNA 181
G+ +
Sbjct: 148 TGGIGS 153
>gi|12232415 hypothetical protein LOC64762 [Homo sapiens]
Length = 875
Score = 31.6 bits (70), Expect = 0.56
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 48 PESARKLHPRPSDKLNPKTINPFGEQSRVPSAFAAIYSKG 87
P SA+ L PS + P+T+ P +Q+R PS + YS G
Sbjct: 537 PRSAKPLSTSPS--IPPRTVKPARQQTRSPSPTLSYYSSG 574
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 30.0 bits (66), Expect = 1.6
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 3 KSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQG-------SKSSLSTSSPESARKLH 55
KSEGS ++L + + Q +S S+Q K+ + G +K LS+ S + K
Sbjct: 1118 KSEGSSSSKLSSSMYSS--QGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSSSTKMKPQ 1175
Query: 56 PRPSDKLNPKTINP 69
+PS +NP P
Sbjct: 1176 GKPSSLMNPSLSKP 1189
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 541 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 600
Query: 64 PKTINPFGEQSRVPSAFAAI 83
+ E S FA +
Sbjct: 601 EEEFKTHHEMKEY-SGFAGV 619
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 712 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 771
Query: 64 PKTINPFGEQSRVPSAFAAI 83
+ E S FA +
Sbjct: 772 EEEFKTHHEMKEY-SGFAGV 790
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 29.6 bits (65), Expect = 2.1
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
S S G++ + + +Y + S KH+ S+SS S++SP S + S K
Sbjct: 714 SRESSGSRKQEKTPKDYKEYKSYKDDSKHKREQDHSRSSSSSASPSSPSSREEKESKKER 773
Query: 64 PKTINPFGEQSRVPSAFAAI 83
+ E S FA +
Sbjct: 774 EEEFKTHHEMKEY-SGFAGV 792
>gi|42733592 hypothetical protein LOC399693 [Homo sapiens]
Length = 953
Score = 29.3 bits (64), Expect = 2.8
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 37 QGSKSSLSTSSPESARKLHPRPSDKLNPKTINPFGEQSRVP 77
QGS +SL TS+P SA +LH K + T+ G++++ P
Sbjct: 166 QGSCASLGTSAPSSASRLH-----KASTLTLRRKGQEAKNP 201
>gi|238776801 SVH protein isoform f [Homo sapiens]
Length = 225
Score = 28.9 bits (63), Expect = 3.6
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 160 IPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKI 213
IP++ + HS+ + E+ LNAL LSV ++ + +K + S LS+ S +
Sbjct: 105 IPIVANKINHSNQSIKEKALNALNNLSV----NVENQIKIKVDSSFLSLYDSHV 154
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.9 bits (63), Expect = 3.6
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 2 QKSEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESAR---KLHPRP 58
+K S + + ++ + +SSS+ ++ S SS S+SSP A+ + P+P
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662
Query: 59 SDKLNPKTINPFGEQSRVP 77
+ +PK P +SR P
Sbjct: 2663 A---SPKKPPPGERRSRSP 2678
>gi|90903231 huntingtin [Homo sapiens]
Length = 3144
Score = 28.5 bits (62), Expect = 4.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 149 PEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQLSVVVGPSLNDHLKHLLTSGSLSI 208
P+K P L L+P L ++ V E A+ ++ G ND+ +L ++
Sbjct: 201 PQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIKVLLKAFIAN 260
Query: 209 IKSKIPT 215
+KS PT
Sbjct: 261 LKSSSPT 267
>gi|169178511 PREDICTED: similar to cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa isoform 1
[Homo sapiens]
Length = 130
Score = 28.5 bits (62), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 164 KAALVHSDDEVFE--RGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSI 219
KA + H D + R LN L +LS +VG +H H SL ++ K P Y +
Sbjct: 50 KAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQL 107
>gi|169178509 PREDICTED: similar to cofactor required for Sp1
transcriptional activation, subunit 8, 34kDa isoform 2
[Homo sapiens]
Length = 160
Score = 28.5 bits (62), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 164 KAALVHSDDEVFE--RGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSI 219
KA + H D + R LN L +LS +VG +H H SL ++ K P Y +
Sbjct: 50 KAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQL 107
>gi|116089335 BR serine/threonine kinase 2 [Homo sapiens]
Length = 668
Score = 28.5 bits (62), Expect = 4.7
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 25/99 (25%)
Query: 35 AVQGSKSSLSTSSPESARKLHPRPSDKLNPKTI-----------NPFGEQSRVPSAFAAI 83
++ G+ S LSTS P S+ ++ P PS + +P +P G + P + ++
Sbjct: 412 SISGASSGLSTS-PLSSPRVTPHPSPRGSPLPTPKGTPVHTPKESPAGTPNPTPPSSPSV 470
Query: 84 YSKGGIPCRLVHGSVK---------HRLQWECP-PESLS 112
GG+P R S+K HR + + P PE +S
Sbjct: 471 ---GGVPWRARLNSIKNSFLGSPRFHRRKLQVPTPEEMS 506
>gi|28558979 mediator complex subunit 27 [Homo sapiens]
Length = 311
Score = 28.5 bits (62), Expect = 4.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 164 KAALVHSDDEVFE--RGLNALVQLSVVVGPSLNDHLKHLLTSGSLSIIKSKIPTYCSI 219
KA + H D + R LN L +LS +VG +H H SL ++ K P Y +
Sbjct: 50 KAFIAHFQDNLHSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQL 107
>gi|209969838 transportin 2 (importin 3, karyopherin beta 2b)
isoform 1 [Homo sapiens]
Length = 897
Score = 28.5 bits (62), Expect = 4.7
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 115 PLLITLAEGLRETKHPYTFVSKEGFREL-LLVKGAPEKAIPLLPRLIPVLKAALVHSDDE 173
P L+ L +GL HP V + G L + +G + +P LP LIP L L SD +
Sbjct: 393 PHLLPLLKGL--LFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCL--SDKK 448
Query: 174 VFERGLNALVQLS----VVVGPSLNDHLKHLLT 202
R + A LS VV + HLK L+T
Sbjct: 449 ALVRSI-ACWTLSRYAHWVVSQPPDMHLKPLMT 480
>gi|209969836 transportin 2 (importin 3, karyopherin beta 2b)
isoform 3 [Homo sapiens]
Length = 887
Score = 28.5 bits (62), Expect = 4.7
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 115 PLLITLAEGLRETKHPYTFVSKEGFREL-LLVKGAPEKAIPLLPRLIPVLKAALVHSDDE 173
P L+ L +GL HP V + G L + +G + +P LP LIP L L SD +
Sbjct: 393 PHLLPLLKGL--LFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCL--SDKK 448
Query: 174 VFERGLNALVQLS----VVVGPSLNDHLKHLLT 202
R + A LS VV + HLK L+T
Sbjct: 449 ALVRSI-ACWTLSRYAHWVVSQPPDMHLKPLMT 480
>gi|48675813 transportin 2 (importin 3, karyopherin beta 2b) isoform
2 [Homo sapiens]
Length = 887
Score = 28.5 bits (62), Expect = 4.7
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 115 PLLITLAEGLRETKHPYTFVSKEGFREL-LLVKGAPEKAIPLLPRLIPVLKAALVHSDDE 173
P L+ L +GL HP V + G L + +G + +P LP LIP L L SD +
Sbjct: 393 PHLLPLLKGL--LFHPEWVVKESGILVLGAIAEGCMQGMVPYLPELIPHLIQCL--SDKK 448
Query: 174 VFERGLNALVQLS----VVVGPSLNDHLKHLLT 202
R + A LS VV + HLK L+T
Sbjct: 449 ALVRSI-ACWTLSRYAHWVVSQPPDMHLKPLMT 480
>gi|24797065 zinc finger protein 212 [Homo sapiens]
Length = 495
Score = 28.5 bits (62), Expect = 4.7
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 149 PEKAIPLLPRLIPVLKAALVHSDDEVFERGLNALVQL------SVVVGPSLNDHLKHLLT 202
PE+++ PRL P K A +H D V R + V L + GPS H++ +
Sbjct: 349 PEESLRPRPRLKPQTKKAKLHQCD-VCLRSFSCKVSLVTHQRCHLQEGPSAGQHVQERFS 407
Query: 203 SGSLSIIKSKIP 214
SL + IP
Sbjct: 408 PNSLVALPGHIP 419
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 28.1 bits (61), Expect = 6.2
Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 2 QKSEGSGGTQLKNRATGNYDQRTSSSTQL----------KHRNAVQGSKSSLSTSSPESA 51
+ +GS QL N TS +T+ K+R + QG +S L S E
Sbjct: 1830 EAQQGSNSCQLNNGGCSQLCLPTSETTRTCMCTVGYYLQKNRMSCQGIESFLMYSVHEGI 1889
Query: 52 RKLHPRPSDKLN 63
R + PSDK++
Sbjct: 1890 RGIPLEPSDKMD 1901
>gi|227497884 brain-enriched guanylate kinase-associated protein
[Homo sapiens]
Length = 593
Score = 28.1 bits (61), Expect = 6.2
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
SEG G +L + G T+SS + + QGS+ SL SS E++ ++H P+ +L+
Sbjct: 516 SEGGDGDRLGVQLCG-----TASSPEPE-----QGSRDSLEPSSMEASPEMH--PAARLS 563
Query: 64 PKTINP 69
P+ P
Sbjct: 564 PQQAFP 569
>gi|13124765 brain-enriched guanylate kinase-associated protein
[Homo sapiens]
Length = 593
Score = 28.1 bits (61), Expect = 6.2
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 4 SEGSGGTQLKNRATGNYDQRTSSSTQLKHRNAVQGSKSSLSTSSPESARKLHPRPSDKLN 63
SEG G +L + G T+SS + + QGS+ SL SS E++ ++H P+ +L+
Sbjct: 516 SEGGDGDRLGVQLCG-----TASSPEPE-----QGSRDSLEPSSMEASPEMH--PAARLS 563
Query: 64 PKTINP 69
P+ P
Sbjct: 564 PQQAFP 569
>gi|207450721 ganglioside induced differentiation associated protein
2 isoform b [Homo sapiens]
Length = 496
Score = 28.1 bits (61), Expect = 6.2
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 73 QSRVPSAFAAIYSKGGIPCRLVHGSVKHRLQWECPPESLSFDPLLITLAEGLRETK 128
+S+V + F +S G+ ++ H H+L PE + F P ++ +R T+
Sbjct: 432 RSKVSTWFFTTFSVSGLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARVRSTR 487
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,047,960
Number of Sequences: 37866
Number of extensions: 401748
Number of successful extensions: 1439
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1408
Number of HSP's gapped (non-prelim): 50
length of query: 221
length of database: 18,247,518
effective HSP length: 98
effective length of query: 123
effective length of database: 14,536,650
effective search space: 1788007950
effective search space used: 1788007950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.