Guide to the Human Genome
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Name: PACRGL Sequence: fasta or formatted (123aa) NCBI GI: 195539375
Description:

PARK2 co-regulated-like isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {221aa} PARK2 co-regulated-like isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.3          4           1
 C cysteine            2.4          3           2
 D aspartate           4.1          5           2
 E glutamate           3.3          4           1
 F phenylalanine       0.8          1           1
 G glycine             6.5          8           2
 H histidine           4.1          5           1
 I isoleucine          4.1          5           2
 K lysine              8.1         10           1
 L leucine            10.6         13           2
 M methionine          0.8          1           1
 N asparagine          5.7          7           1
 P proline             5.7          7           1
 Q glutamine           4.9          6           1
 R arginine            4.9          6           1
 S serine             17.1         21           3
 T threonine           6.5          8           1
 V valine              5.7          7           3
 W tryptophan          0.0          0           0
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PARK2 co-regulated-like isoform 2 
PACRGL                0.518   PARK2 co-regulated-like isoform 1 
MED1                  0.027   mediator complex subunit 1 
GPRIN3                0.027   G protein-regulated inducer of neurite outgrowth 3 ...
PTPRA                 0.027   protein tyrosine phosphatase, receptor type, A isofo...
PTPRA                 0.027   protein tyrosine phosphatase, receptor type, A isofor...
PTPRA                 0.027   protein tyrosine phosphatase, receptor type, A isofo...
FLG                   0.023   filaggrin 
BCLAF1                0.023   BCL2-associated transcription factor 1 isoform 3 [H...
BCLAF1                0.023   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.023   BCL2-associated transcription factor 1 isoform 1 [Hom...
LZTS1                 0.018   leucine zipper, putative tumor suppressor 1 
CKAP5                 0.018   colonic and hepatic tumor over-expressed protein iso...
CKAP5                 0.018   colonic and hepatic tumor over-expressed protein iso...
ZDBF2                 0.018   zinc finger, DBF-type containing 2 
LRP1B                 0.014   low density lipoprotein-related protein 1B precursor...
BEGAIN                0.014   brain-enriched guanylate kinase-associated protein ...
BEGAIN                0.014   brain-enriched guanylate kinase-associated protein [...
ARHGEF17              0.014   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
C10orf12              0.014   hypothetical protein LOC26148 
BAT2D1                0.014   HBxAg transactivated protein 2 
ZFYVE26               0.014   zinc finger, FYVE domain containing 26 
LOC731605             0.009   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.009   PREDICTED: similar to BCL2-associated transcription...
LRRC34                0.009   leucine rich repeat containing 34 
MGC50722              0.009   hypothetical protein LOC399693 
MUC16                 0.009   mucin 16 
ANKFN1                0.009   ankyrin-repeat and fibronectin type III domain cont...
ZAK                   0.009   MLK-related kinase isoform 1 
SRRM2                 0.009   splicing coactivator subunit SRm300 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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