BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|21450675 RNA binding motif protein 46 [Homo sapiens] (533 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|21450675 RNA binding motif protein 46 [Homo sapiens] 1091 0.0 gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] 465 e-131 gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] 465 e-131 gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapi... 464 e-131 gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapi... 464 e-131 gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapi... 438 e-123 gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4... 345 8e-95 gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [... 345 8e-95 gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3... 339 3e-93 gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1... 339 3e-93 gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting ... 333 2e-91 gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting ... 333 2e-91 gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting ... 333 2e-91 gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting ... 333 2e-91 gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting ... 282 5e-76 gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting ... 282 5e-76 gi|34740339 dead end homolog 1 [Homo sapiens] 189 4e-48 gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sa... 78 2e-14 gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 75 2e-13 gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] 74 4e-13 gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo s... 71 2e-12 gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 71 3e-12 gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 70 6e-12 gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 70 6e-12 gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 70 6e-12 gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo s... 67 3e-11 gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo s... 67 4e-11 gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sa... 67 4e-11 gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 67 5e-11 gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 63 6e-10 >gi|21450675 RNA binding motif protein 46 [Homo sapiens] Length = 533 Score = 1091 bits (2822), Expect = 0.0 Identities = 533/533 (100%), Positives = 533/533 (100%) Query: 1 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG 60 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG Sbjct: 1 MNEENIDGTNGCSKVRTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRG 60 Query: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI 120 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRI 120 Query: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK Sbjct: 121 LNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDK 180 Query: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV Sbjct: 181 TKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYV 240 Query: 241 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS 300 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS Sbjct: 241 RNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGAS 300 Query: 301 IEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPARLNGQHSP 360 IEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPARLNGQHSP Sbjct: 301 IEVTLAKPVNKENTWRQHLNGQISPNSENLIVFANKEESHPKTLGKLPTLPARLNGQHSP 360 Query: 361 SPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ 420 SPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ Sbjct: 361 SPPEVERCTYPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQ 420 Query: 421 DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFHRSSINSLS 480 DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFHRSSINSLS Sbjct: 421 DGKVLLVYKIVIPAIANGSQSYFMPDKLCTTLEDAKELAAQFTLLHLDYNFHRSSINSLS 480 Query: 481 PVSATLSSGTPSVLPYTSRPYSYPGYPLSPTISLANGSHVGQRLCISNQASFF 533 PVSATLSSGTPSVLPYTSRPYSYPGYPLSPTISLANGSHVGQRLCISNQASFF Sbjct: 481 PVSATLSSGTPSVLPYTSRPYSYPGYPLSPTISLANGSHVGQRLCISNQASFF 533 >gi|148833513 RNA binding motif protein 47 isoform a [Homo sapiens] Length = 593 Score = 465 bits (1196), Expect = e-131 Identities = 222/295 (75%), Positives = 255/295 (86%) Query: 18 GIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDEL 77 G NEAALLALME+TGY+MVQENGQRK+GGPPPGWEGP P RGCEVFVGKIPRD+YEDEL Sbjct: 28 GAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDEL 87 Query: 78 VPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 VPVFE G+IYE RLMM+F G+NRGYAFVMY K EA+ A+R LNNYEIRPG+ +GVC S Sbjct: 88 VPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCS 147 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 +DNCRLFIG IPK KK+EEIL+E+ KVTEGV+DVIVY SA DK KNRGFAFVEYESHRAA Sbjct: 148 VDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAA 207 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 AMARRKL+PG QLWGH I VDWA+PE +VDE+ M+ VK+LYVRNLMI TTE+TIK F Sbjct: 208 AMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFG 267 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKE 312 +F PG VERVKK+RDYAFVHF +REDAV AM+ +NG ++G+ +EVTLAKPV+KE Sbjct: 268 QFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKE 322 >gi|148833511 RNA binding motif protein 47 isoform b [Homo sapiens] Length = 524 Score = 465 bits (1196), Expect = e-131 Identities = 222/295 (75%), Positives = 255/295 (86%) Query: 18 GIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDEL 77 G NEAALLALME+TGY+MVQENGQRK+GGPPPGWEGP P RGCEVFVGKIPRD+YEDEL Sbjct: 28 GAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGPHPQRGCEVFVGKIPRDVYEDEL 87 Query: 78 VPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 VPVFE G+IYE RLMM+F G+NRGYAFVMY K EA+ A+R LNNYEIRPG+ +GVC S Sbjct: 88 VPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCS 147 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 +DNCRLFIG IPK KK+EEIL+E+ KVTEGV+DVIVY SA DK KNRGFAFVEYESHRAA Sbjct: 148 VDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAA 207 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 AMARRKL+PG QLWGH I VDWA+PE +VDE+ M+ VK+LYVRNLMI TTE+TIK F Sbjct: 208 AMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFG 267 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKE 312 +F PG VERVKK+RDYAFVHF +REDAV AM+ +NG ++G+ +EVTLAKPV+KE Sbjct: 268 QFNPGCVERVKKIRDYAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKE 322 >gi|20357575 apobec-1 complementation factor isoform 2 [Homo sapiens] Length = 594 Score = 464 bits (1195), Expect = e-131 Identities = 216/297 (72%), Positives = 258/297 (86%) Query: 17 TGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDE 76 +G Q EAAL AL+++TGY++VQENGQRK+GGPPPGW+ PP RGCE+F+GK+PRD++EDE Sbjct: 12 SGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDE 71 Query: 77 LVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCV 136 L+P+ E+ GKIYE R+MM+F+G NRGYAFV ++ K EA+ AI+ LNNYEIR G+ +GVC Sbjct: 72 LIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCA 131 Query: 137 SLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRA 196 S+DNCRLF+G IPK KK+EEIL EMKKVTEGVVDVIVYPSA DKTKNRGFAFVEYESHRA Sbjct: 132 SVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRA 191 Query: 197 AAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256 AAMARRKL+PG QLWGH I VDWA+PE EVDE+TM VK+LYVRNLM+ST+EE I+ EF Sbjct: 192 AAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251 Query: 257 NKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEN 313 N KPGAVERVKK+RDYAFVHF NREDAV AM +NGK +DG+ IEVTLAKPV+K++ Sbjct: 252 NNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDS 308 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 370 YPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQDGKVLLVYK 429 Y PG +LTP++ +LK A L+ C KNNW P Y L+S QD + L +YK Sbjct: 423 YDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYK 482 Query: 430 IVIPAIANGSQSY--FMPDKLCTTLEDAKELAAQFTL 464 I IPA+A+ + + F P KL +++AK AA++TL Sbjct: 483 ITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTL 519 >gi|20357572 apobec-1 complementation factor isoform 1 [Homo sapiens] Length = 586 Score = 464 bits (1195), Expect = e-131 Identities = 216/297 (72%), Positives = 258/297 (86%) Query: 17 TGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDE 76 +G Q EAAL AL+++TGY++VQENGQRK+GGPPPGW+ PP RGCE+F+GK+PRD++EDE Sbjct: 12 SGTQKEAALRALVQRTGYSLVQENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDE 71 Query: 77 LVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCV 136 L+P+ E+ GKIYE R+MM+F+G NRGYAFV ++ K EA+ AI+ LNNYEIR G+ +GVC Sbjct: 72 LIPLCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCA 131 Query: 137 SLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRA 196 S+DNCRLF+G IPK KK+EEIL EMKKVTEGVVDVIVYPSA DKTKNRGFAFVEYESHRA Sbjct: 132 SVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRA 191 Query: 197 AAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEF 256 AAMARRKL+PG QLWGH I VDWA+PE EVDE+TM VK+LYVRNLM+ST+EE I+ EF Sbjct: 192 AAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEF 251 Query: 257 NKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEN 313 N KPGAVERVKK+RDYAFVHF NREDAV AM +NGK +DG+ IEVTLAKPV+K++ Sbjct: 252 NNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDS 308 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 370 YPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQDGKVLLVYK 429 Y PG +LTP++ +LK A L+ C KNNW P Y L+S QD + L +YK Sbjct: 415 YDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYK 474 Query: 430 IVIPAIANGSQSY--FMPDKLCTTLEDAKELAAQFTL 464 I IPA+A+ + + F P KL +++AK AA++TL Sbjct: 475 ITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTL 511 >gi|20357578 apobec-1 complementation factor isoform 3 [Homo sapiens] Length = 594 Score = 438 bits (1127), Expect = e-123 Identities = 203/276 (73%), Positives = 240/276 (86%) Query: 38 QENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFS 97 +ENGQRK+GGPPPGW+ PP RGCE+F+GK+PRD++EDEL+P+ E+ GKIYE R+MM+F+ Sbjct: 41 KENGQRKYGGPPPGWDAAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDFN 100 Query: 98 GENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEI 157 G NRGYAFV ++ K EA+ AI+ LNNYEIR G+ +GVC S+DNCRLF+G IPK KK+EEI Sbjct: 101 GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEI 160 Query: 158 LDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQ 217 L EMKKVTEGVVDVIVYPSA DKTKNRGFAFVEYESHRAAAMARRKL+PG QLWGH I Sbjct: 161 LSEMKKVTEGVVDVIVYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIA 220 Query: 218 VDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRDYAFVH 277 VDWA+PE EVDE+TM VK+LYVRNLM+ST+EE I+ EFN KPGAVERVKK+RDYAFVH Sbjct: 221 VDWAEPEVEVDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVH 280 Query: 278 FFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKEN 313 F NREDAV AM +NGK +DG+ IEVTLAKPV+K++ Sbjct: 281 FSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKDS 316 Score = 75.5 bits (184), Expect = 1e-13 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 370 YPFYPGTKLTPISMYSLKSNHFNSAVMHLDYYCNKNNWAPPEYYLYSTTSQDGKVLLVYK 429 Y PG +LTP++ +LK A L+ C KNNW P Y L+S QD + L +YK Sbjct: 423 YDILPGMELTPMNPVTLKPQGIKLAPQILEEICQKNNWGQPVYQLHSAIGQDQRQLFLYK 482 Query: 430 IVIPAIANGSQSY--FMPDKLCTTLEDAKELAAQFTL 464 I IPA+A+ + + F P KL +++AK AA++TL Sbjct: 483 ITIPALASQNPAIHPFTPPKLSAFVDEAKTYAAEYTL 519 >gi|156151392 heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens] Length = 532 Score = 345 bits (884), Expect = 8e-95 Identities = 171/300 (57%), Positives = 225/300 (75%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV Sbjct: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 81 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S Sbjct: 82 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 141 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE IL+E KVTEG+VDVI+Y DK KNRGF F+EYE H++A Sbjct: 142 VANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSA 201 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 202 AQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 261 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+ RQ Sbjct: 262 EF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 319 >gi|5031755 heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens] Length = 633 Score = 345 bits (884), Expect = 8e-95 Identities = 171/300 (57%), Positives = 225/300 (75%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV Sbjct: 123 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 182 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S Sbjct: 183 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 242 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE IL+E KVTEG+VDVI+Y DK KNRGF F+EYE H++A Sbjct: 243 VANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSA 302 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 303 AQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFS 362 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+ RQ Sbjct: 363 EF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQ 420 >gi|156151396 heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens] Length = 535 Score = 339 bits (870), Expect = 3e-93 Identities = 171/303 (56%), Positives = 225/303 (74%), Gaps = 8/303 (2%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV Sbjct: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 81 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S Sbjct: 82 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 141 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVT---EGVVDVIVYPSATDKTKNRGFAFVEYESH 194 + N RLF+G+IPK K KE IL+E KVT EG+VDVI+Y DK KNRGF F+EYE H Sbjct: 142 VANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 201 Query: 195 RAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKA 254 ++AA ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++ Sbjct: 202 KSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEK 261 Query: 255 EFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314 F++F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+ Sbjct: 262 SFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 319 Query: 315 WRQ 317 RQ Sbjct: 320 ERQ 322 >gi|156151394 heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens] Length = 636 Score = 339 bits (870), Expect = 3e-93 Identities = 171/303 (56%), Positives = 225/303 (74%), Gaps = 8/303 (2%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G EVFVGKIPRD+YEDELV Sbjct: 123 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELV 182 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ SG+NRGYAF+ + KE AQ A+++ ++YEIRPGK +GVC+S Sbjct: 183 PLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCIS 242 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVT---EGVVDVIVYPSATDKTKNRGFAFVEYESH 194 + N RLF+G+IPK K KE IL+E KVT EG+VDVI+Y DK KNRGF F+EYE H Sbjct: 243 VANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDH 302 Query: 195 RAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKA 254 ++AA ARR+L+ G ++WG+ + V+WADP +E D E M +VKVL+VRNL + TEE ++ Sbjct: 303 KSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEK 362 Query: 255 EFNKFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENT 314 F++F G +ERVKKL+DYAFVHF +R AV AM MNGK I+G IE+ LAKP +K+ Sbjct: 363 SFSEF--GKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK 420 Query: 315 WRQ 317 RQ Sbjct: 421 ERQ 423 >gi|228008400 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 6 [Homo sapiens] Length = 562 Score = 333 bits (854), Expect = 2e-91 Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ V+WADP ++ D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 360 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417 >gi|228008396 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 2 [Homo sapiens] Length = 464 Score = 333 bits (854), Expect = 2e-91 Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 22 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 81 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 82 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 141 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 142 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 201 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ V+WADP ++ D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 202 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 261 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 262 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 319 >gi|228008293 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 5 [Homo sapiens] Length = 561 Score = 333 bits (854), Expect = 2e-91 Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ V+WADP ++ D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 360 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417 >gi|228008291 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 1 [Homo sapiens] Length = 623 Score = 333 bits (854), Expect = 2e-91 Identities = 164/300 (54%), Positives = 222/300 (74%), Gaps = 5/300 (1%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A ARR+L+ G ++WG+ V+WADP ++ D E M +VKVL+VRNL + TEE ++ F+ Sbjct: 300 AQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFS 359 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 360 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417 >gi|228008398 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 3 [Homo sapiens] Length = 527 Score = 282 bits (722), Expect = 5e-76 Identities = 149/300 (49%), Positives = 199/300 (66%), Gaps = 40/300 (13%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A +VKVL+VRNL + TEE ++ F+ Sbjct: 300 A-----------------------------------QVKVLFVRNLANTVTEEILEKAFS 324 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 325 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 382 >gi|228008295 synaptotagmin binding, cytoplasmic RNA interacting protein isoform 4 [Homo sapiens] Length = 588 Score = 282 bits (722), Expect = 5e-76 Identities = 149/300 (49%), Positives = 199/300 (66%), Gaps = 40/300 (13%) Query: 21 NEAALLALMEKTGYNMVQENGQRKFGGPPPG--WEGPPPPRGCEVFVGKIPRDMYEDELV 78 +EA + AL+E+TGY + GQRK+GGPPP + G P G E+FVGKIPRD++EDELV Sbjct: 120 DEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELV 179 Query: 79 PVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVS 137 P+FE+AG I++ RLMM+ +G NRGYAFV + TKE AQ A+++ NN+EIR GK IGVC+S Sbjct: 180 PLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCIS 239 Query: 138 LDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAA 197 + N RLF+G+IPK K KE+IL+E KVTEG+ DVI+Y DK KNRGF F+EYE H+ A Sbjct: 240 VANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTA 299 Query: 198 AMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQRVKVLYVRNLMISTTEETIKAEFN 257 A +VKVL+VRNL + TEE ++ F+ Sbjct: 300 A-----------------------------------QVKVLFVRNLANTVTEEILEKAFS 324 Query: 258 KFKPGAVERVKKLRDYAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQ 317 +F G +ERVKKL+DYAF+HF R+ AV AM MNGK ++G +IE+ AKP +++ R+ Sbjct: 325 QF--GKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 382 >gi|34740339 dead end homolog 1 [Homo sapiens] Length = 353 Score = 189 bits (481), Expect = 4e-48 Identities = 89/209 (42%), Positives = 135/209 (64%), Gaps = 2/209 (0%) Query: 16 RTGIQNEAALLALMEKTGYNMVQENGQRKFGGPPPGWEGPPPPRGCEVFVGKIPRDMYED 75 R +N+AAL A + +TG +VQ NGQRK+GGPPPGW G PPP G EVF+G++P+D+YE Sbjct: 13 RVNPENKAALEAWVRETGIRLVQVNGQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEH 72 Query: 76 ELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVC 135 +L+P+F+R G++YEFRLMM FSG NRG+A+ Y+++ AQ AI L+N+ +RP + VC Sbjct: 73 QLIPLFQRVGRLYEFRLMMTFSGLNRGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVC 132 Query: 136 VSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHR 195 S + C L + +P + +L ++ + G+ + + PS A +++ SHR Sbjct: 133 RSTEKCELSVDGLPPNLTRSALLLALQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHR 190 Query: 196 AAAMARRKLIPGTFQLWGHTIQVDWADPE 224 AAAMA++ L+ G L G + V+W P+ Sbjct: 191 AAAMAKKALVEGQSHLCGEQVAVEWLKPD 219 >gi|24762232 bruno-like 5, RNA binding protein isoform 1 [Homo sapiens] Length = 485 Score = 77.8 bits (190), Expect = 2e-14 Identities = 61/211 (28%), Positives = 105/211 (49%), Gaps = 31/211 (14%) Query: 49 PPGWEGPPPPRG----------CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FS 97 P G GP PP G ++FVG+IPR + E +L P+FE+ G+IYE ++ + ++ Sbjct: 23 PVGSSGPEPPGGQPDGMKDLDAIKLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYT 82 Query: 98 GENRGYAFVMYTTKEEAQLAIRILNNYEIRPGKFIGVCVSLDNC--------RLFIGAIP 149 G ++G AF+ Y ++ A A L+ + PG + V + +LF+G + Sbjct: 83 GMHKGCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLN 142 Query: 150 KEKKKEEILDEMKKVTEGVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKL----- 204 K++ +E++L + GV+D D + ++G AFV++ SH A A L Sbjct: 143 KQQSEEDVLRLFQPF--GVIDECTVLRGPDGS-SKGCAFVKFSSHTEAQAAIHALHGSQT 199 Query: 205 IPGTFQLWGHTIQVDWADPEKEVDEETMQRV 235 +PG ++ V +AD +KE MQ++ Sbjct: 200 MPGA----SSSLVVKFADTDKERTLRRMQQM 226 >gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo sapiens] Length = 370 Score = 74.7 bits (182), Expect = 2e-13 Identities = 70/284 (24%), Positives = 123/284 (43%), Gaps = 54/284 (19%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 VF+ + + + L F GKI ++M + G ++GYAFV + + A AI +N Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEMN 158 Query: 123 NYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEIL---------------------DEM 161 GK L C++F+G K +E L + + Sbjct: 159 ------GKL------LKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERL 206 Query: 162 KKVTEGVVDVIVYPSATDKT-KNRGFAFVEYESHRAAAMARRKL----IPGTFQLWGHTI 216 K V + TD + K++GF FV ++SH AA A ++ I G G Sbjct: 207 KDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQ 266 Query: 217 QVDWADPEKEVDEETMQRVKV-------LYVRNLMISTTEETIKAEFNKFKPGAVERVKK 269 + E + E ++R ++ LY++NL + +E ++ EF+ F G++ RVK Sbjct: 267 KKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSF--GSISRVKV 324 Query: 270 LRD------YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAK 307 +++ + + F + EDA AM+ MNG+ + + + LA+ Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQ 368 Score = 40.0 bits (92), Expect = 0.005 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 15/129 (11%) Query: 182 KNRGFAFVEYESHRAAAMARRKLIPGTFQLW-GHTIQVDWADPEKEVDEETMQRVKVLYV 240 ++ G+A+V + A A++ L F + G +I++ W+ + + + V ++ Sbjct: 49 RSLGYAYVNFLQ---LADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNV---FI 102 Query: 241 RNLMISTTEETIKAEFNKFKPGAVERVKKLRD------YAFVHFFNREDAVAAMSVMNGK 294 +NL S +T+ F+ F G + K + D YAFVHF N+ A A+ MNGK Sbjct: 103 KNLDKSIDNKTLYEHFSAF--GKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNGK 160 Query: 295 CIDGASIEV 303 + G + V Sbjct: 161 LLKGCKVFV 169 >gi|71164894 trinucleotide repeat containing 4 [Homo sapiens] Length = 465 Score = 73.6 bits (179), Expect = 4e-13 Identities = 56/193 (29%), Positives = 101/193 (52%), Gaps = 24/193 (12%) Query: 58 PRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQL 116 P ++FVG+IPR + E +L P+FE+ G+I+E ++ + ++G ++G AF+ Y ++ A Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63 Query: 117 AIRILNNYEIRPGKFIGVCVSL-------DNCRLFIGAIPKEKKKEEILDEMKKVTE--G 167 A L+ + PG + V ++ +LF+G + K++ E++ +K+ E G Sbjct: 64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDV----RKMFEPFG 119 Query: 168 VVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKL-----IPGTFQLWGHTIQVDWAD 222 +D D T ++G AFV++++H A A L +PG ++ V +AD Sbjct: 120 TIDECTVLRGPDGT-SKGCAFVKFQTHAEAQAAINTLHSSRTLPGA----SSSLVVKFAD 174 Query: 223 PEKEVDEETMQRV 235 EKE MQ+V Sbjct: 175 TEKERGLRRMQQV 187 Score = 40.4 bits (93), Expect = 0.004 Identities = 16/70 (22%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 58 PRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQL 116 P GC +F+ +P++ + E++ +F G + ++ ++ + +++ + FV + AQ Sbjct: 377 PDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQA 436 Query: 117 AIRILNNYEI 126 AI+ +N ++I Sbjct: 437 AIQAMNGFQI 446 >gi|187761303 bruno-like 4, RNA binding protein isoform 4 [Homo sapiens] Length = 448 Score = 71.2 bits (173), Expect = 2e-12 Identities = 55/186 (29%), Positives = 101/186 (54%), Gaps = 18/186 (9%) Query: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120 ++F+G+IPR++ E +L P+FE GKIYE ++ + F+G ++G AF+ Y +E A A Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114 Query: 121 LNNYEIRPGKFIGVCVSL-------DNCRLFIGAIPKEKKKEEILDEMKKVTE--GVVDV 171 L+ + PG + V ++ +LF+G + K++ + D+++++ E G ++ Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQSE----DDVRRLFEAFGNIEE 170 Query: 172 IVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDWADPEKEVDE 229 D ++G AFV+Y SH A A A + G+ + G ++ V +AD +KE Sbjct: 171 CTILRGPD-GNSKGCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVKFADTDKERTM 228 Query: 230 ETMQRV 235 MQ++ Sbjct: 229 RRMQQM 234 >gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] Length = 631 Score = 70.9 bits (172), Expect = 3e-12 Identities = 66/262 (25%), Positives = 117/262 (44%), Gaps = 24/262 (9%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG I R+ + + + YA+V + ++A+ A+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRL--------FIGAIPKEKKKEEILDEMKKVTEGVVDVIV 173 N +++ GK + + S + L F+ + K + + D + +++ Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG----NILS 127 Query: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQ 233 D+ ++G+ FV +E+H AA A +K+ L G + V KE + E Sbjct: 128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM--NGMLLNGRKVFVGQFKSRKEREAELGA 185 Query: 234 RVKV---LYVRNLMISTTEETIKAEFNKFKPGAVERVK-----KLRDYAFVHFFNREDAV 285 R K +Y++N +E +K F KF P +V K + + FV F EDA Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 286 AAMSVMNGKCIDGASIEVTLAK 307 A+ MNGK ++G I V A+ Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQ 267 Score = 61.6 bits (148), Expect = 2e-09 Identities = 70/274 (25%), Positives = 116/274 (42%), Gaps = 34/274 (12%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 +FV + + + L G I ++ + +G ++GY FV + T E A+ AI+ +N Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKK-------EEILDEMKKVTEGVVD--VI 172 + K F+G S +GA KE E++ DE K G + Sbjct: 160 GMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-- 230 V + K++GF FV +E H A A ++ +L G I V A + E E Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEM--NGKELNGKQIYVGRAQKKVERQTELK 277 Query: 231 -----------TMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD------Y 273 T +V LYV+NL +E ++ F+ F G + K + + + Sbjct: 278 RTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPF--GTITSAKVMMEGGRSKGF 335 Query: 274 AFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAK 307 FV F + E+A A++ MNG+ + + V LA+ Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 369 >gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo sapiens] Length = 631 Score = 69.7 bits (169), Expect = 6e-12 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 37/289 (12%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 VF+ + + + L F G I +++ + +G ++GYAFV + T+E A AI +N Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKK-------EEILDEMKK--VTEGVVDVI 172 + K F+G S +GA KE EE+ DE K ++ + Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM 232 V K++GF FV YE H A A ++ ++ G I V A + E E Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM--NGKEISGKIIFVGRAQKKVERQAELK 277 Query: 233 QRVKVL-------------YVRNLMISTTEETIKAEFNKFKPGAVERVKKL------RDY 273 ++ + L Y++NL + +E ++ EF+ F G++ K + + + Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGF 335 Query: 274 AFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQ 322 FV F + E+A A++ MNG+ + + V LA+ ++ + HL Q Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAHLTNQ 381 Score = 62.8 bits (151), Expect = 8e-10 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 28/264 (10%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG + R+ + + + GYA+V + +A+ A+ + Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRL--------FIGAIPKEKKKEEILDEMKKVTEGVVDVIV 173 N +++ GK I + S + L FI + K + + D +++ Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG----NILS 127 Query: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQ 233 D+ ++G+AFV +E+ AA A K+ L + V KE + E Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 234 RVKV---LYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-------YAFVHFFNRED 283 + K +Y++N +E++K F++F G VK +RD + FV + ED Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHED 243 Query: 284 AVAAMSVMNGKCIDGASIEVTLAK 307 A A+ MNGK I G I V A+ Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQ 267 >gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo sapiens] Length = 644 Score = 69.7 bits (169), Expect = 6e-12 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 37/289 (12%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 VF+ + + + L F G I +++ + +G ++GYAFV + T+E A AI +N Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKK-------EEILDEMKK--VTEGVVDVI 172 + K F+G S +GA KE EE+ DE K ++ + Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM 232 V K++GF FV YE H A A ++ ++ G I V A + E E Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM--NGKEISGKIIFVGRAQKKVERQAELK 277 Query: 233 QRVKVL-------------YVRNLMISTTEETIKAEFNKFKPGAVERVKKL------RDY 273 ++ + L Y++NL + +E ++ EF+ F G++ K + + + Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGF 335 Query: 274 AFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQ 322 FV F + E+A A++ MNG+ + + V LA+ ++ + HL Q Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAHLTNQ 381 Score = 62.8 bits (151), Expect = 8e-10 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 28/264 (10%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG + R+ + + + GYA+V + +A+ A+ + Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRL--------FIGAIPKEKKKEEILDEMKKVTEGVVDVIV 173 N +++ GK I + S + L FI + K + + D +++ Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG----NILS 127 Query: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQ 233 D+ ++G+AFV +E+ AA A K+ L + V KE + E Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 234 RVKV---LYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-------YAFVHFFNRED 283 + K +Y++N +E++K F++F G VK +RD + FV + ED Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHED 243 Query: 284 AVAAMSVMNGKCIDGASIEVTLAK 307 A A+ MNGK I G I V A+ Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQ 267 >gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo sapiens] Length = 660 Score = 69.7 bits (169), Expect = 6e-12 Identities = 73/289 (25%), Positives = 127/289 (43%), Gaps = 37/289 (12%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 VF+ + + + L F G I +++ + +G ++GYAFV + T+E A AI +N Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYAFVHFETQEAADKAIEKMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKK-------EEILDEMKK--VTEGVVDVI 172 + K F+G S +GA KE EE+ DE K ++ + Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM 232 V K++GF FV YE H A A ++ ++ G I V A + E E Sbjct: 220 VKVMRDPNGKSKGFGFVSYEKHEDANKAVEEM--NGKEISGKIIFVGRAQKKVERQAELK 277 Query: 233 QRVKVL-------------YVRNLMISTTEETIKAEFNKFKPGAVERVKKL------RDY 273 ++ + L Y++NL + +E ++ EF+ F G++ K + + + Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPF--GSITSAKVMLEDGRSKGF 335 Query: 274 AFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQ 322 FV F + E+A A++ MNG+ + + V LA+ ++ + HL Q Sbjct: 336 GFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQ---RKEERKAHLTNQ 381 Score = 62.8 bits (151), Expect = 8e-10 Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 28/264 (10%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG + R+ + + + GYA+V + +A+ A+ + Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRL--------FIGAIPKEKKKEEILDEMKKVTEGVVDVIV 173 N +++ GK I + S + L FI + K + + D +++ Sbjct: 73 N-FDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFG----NILS 127 Query: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQ 233 D+ ++G+AFV +E+ AA A K+ L + V KE + E Sbjct: 128 CKVVCDENGSKGYAFVHFETQEAADKAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 234 RVKV---LYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-------YAFVHFFNRED 283 + K +Y++N +E++K F++F G VK +RD + FV + ED Sbjct: 186 KAKEFTNVYIKNFGEEVDDESLKELFSQF--GKTLSVKVMRDPNGKSKGFGFVSYEKHED 243 Query: 284 AVAAMSVMNGKCIDGASIEVTLAK 307 A A+ MNGK I G I V A+ Sbjct: 244 ANKAVEEMNGKEISGKIIFVGRAQ 267 >gi|187761301 bruno-like 4, RNA binding protein isoform 3 [Homo sapiens] Length = 484 Score = 67.4 bits (163), Expect = 3e-11 Identities = 56/195 (28%), Positives = 101/195 (51%), Gaps = 27/195 (13%) Query: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120 ++F+G+IPR++ E +L P+FE GKIYE ++ + F+G ++G AF+ Y +E A A Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114 Query: 121 LNNYEIRPGKFIGVCVSL--------DNC--------RLFIGAIPKEKKKEEILDEMKKV 164 L+ + PG + V +C +LF+G + K++ + D+++++ Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSHRKLFVGMLNKQQSE----DDVRRL 170 Query: 165 TE--GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVDW 220 E G ++ D ++G AFV+Y SH A A A + G+ + G ++ V + Sbjct: 171 FEAFGNIEECTILRGPD-GNSKGCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVKF 228 Query: 221 ADPEKEVDEETMQRV 235 AD +KE MQ++ Sbjct: 229 ADTDKERTMRRMQQM 243 Score = 50.4 bits (119), Expect = 4e-06 Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQL 116 PP ++FVG + + ED++ +FE G I E ++ G ++G AFV Y++ EAQ Sbjct: 147 PPSHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQA 206 Query: 117 AIRILNNYEIRPG 129 AI L+ + PG Sbjct: 207 AINALHGSQTMPG 219 >gi|187761299 bruno-like 4, RNA binding protein isoform 2 [Homo sapiens] Length = 485 Score = 67.0 bits (162), Expect = 4e-11 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 28/196 (14%) Query: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120 ++F+G+IPR++ E +L P+FE GKIYE ++ + F+G ++G AF+ Y +E A A Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114 Query: 121 LNNYEIRPGKFIGVCVS-----------------LDNCRLFIGAIPKEKKKEEILDEMKK 163 L+ + PG + V + +LF+G + K++ + D++++ Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSE----DDVRR 170 Query: 164 VTE--GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVD 219 + E G ++ D ++G AFV+Y SH A A A + G+ + G ++ V Sbjct: 171 LFEAFGNIEECTILRGPD-GNSKGCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVK 228 Query: 220 WADPEKEVDEETMQRV 235 +AD +KE MQ++ Sbjct: 229 FADTDKERTMRRMQQM 244 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/74 (35%), Positives = 42/74 (56%) Query: 56 PPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQ 115 PP + ++FVG + + ED++ +FE G I E ++ G ++G AFV Y++ EAQ Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 206 Query: 116 LAIRILNNYEIRPG 129 AI L+ + PG Sbjct: 207 AAINALHGSQTMPG 220 >gi|13123778 bruno-like 4, RNA binding protein isoform 1 [Homo sapiens] Length = 486 Score = 67.0 bits (162), Expect = 4e-11 Identities = 55/196 (28%), Positives = 100/196 (51%), Gaps = 28/196 (14%) Query: 62 EVFVGKIPRDMYEDELVPVFERAGKIYEFRLMME-FSGENRGYAFVMYTTKEEAQLAIRI 120 ++F+G+IPR++ E +L P+FE GKIYE ++ + F+G ++G AF+ Y +E A A Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114 Query: 121 LNNYEIRPGKFIGVCVS-----------------LDNCRLFIGAIPKEKKKEEILDEMKK 163 L+ + PG + V + +LF+G + K++ + D++++ Sbjct: 115 LHEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSE----DDVRR 170 Query: 164 VTE--GVVDVIVYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWG--HTIQVD 219 + E G ++ D ++G AFV+Y SH A A A + G+ + G ++ V Sbjct: 171 LFEAFGNIEECTILRGPD-GNSKGCAFVKYSSH-AEAQAAINALHGSQTMPGASSSLVVK 228 Query: 220 WADPEKEVDEETMQRV 235 +AD +KE MQ++ Sbjct: 229 FADTDKERTMRRMQQM 244 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/74 (35%), Positives = 42/74 (56%) Query: 56 PPPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQ 115 PP + ++FVG + + ED++ +FE G I E ++ G ++G AFV Y++ EAQ Sbjct: 147 PPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQ 206 Query: 116 LAIRILNNYEIRPG 129 AI L+ + PG Sbjct: 207 AAINALHGSQTMPG 220 >gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] Length = 636 Score = 66.6 bits (161), Expect = 5e-11 Identities = 74/291 (25%), Positives = 128/291 (43%), Gaps = 41/291 (14%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 +F+ + + + L F G I +++ + +G ++GY FV + T+E A+ AI +N Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKK-------EEILDEMKKVTEGVVD--VI 172 + K F+G S +GA KE E++ DE K G + Sbjct: 160 GMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM 232 V + K++GF FV +E H A A ++ +L G I V A +K+V+ +T Sbjct: 220 VKVMTDESGKSKGFGFVSFERHEDAQKAVDEM--NGKELNGKQIYVGRA--QKKVERQTE 275 Query: 233 QRVKV---------------LYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD----- 272 + K LYV+NL +E ++ EF+ F G + K + + Sbjct: 276 LKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPF--GTITSAKVMMEGGRSK 333 Query: 273 -YAFVHFFNREDAVAAMSVMNGKCIDGASIEVTLAKPVNKENTWRQHLNGQ 322 + FV F + E+A A++ MNG+ + + V LA+ ++ + HL Q Sbjct: 334 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ---RKEERQAHLTNQ 381 Score = 65.5 bits (158), Expect = 1e-10 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 24/262 (9%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG I R+ + + + GYA+V + +A+ A+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRL--------FIGAIPKEKKKEEILDEMKKVTEGVVDVIV 173 N +++ GK + + S + L FI + K + + D +++ Sbjct: 73 N-FDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFG----NILS 127 Query: 174 YPSATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETMQ 233 D+ ++G+ FV +E+ AA A K+ L + V KE + E Sbjct: 128 CKVVCDENGSKGYGFVHFETQEAAERAIEKM--NGMLLNDRKVFVGRFKSRKEREAELGA 185 Query: 234 RVKV---LYVRNLMISTTEETIKAEFNKFKPGAVERVK-----KLRDYAFVHFFNREDAV 285 R K +Y++N +E +K F KF P +V K + + FV F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245 Query: 286 AAMSVMNGKCIDGASIEVTLAK 307 A+ MNGK ++G I V A+ Sbjct: 246 KAVDEMNGKELNGKQIYVGRAQ 267 >gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo sapiens] Length = 614 Score = 63.2 bits (152), Expect = 6e-10 Identities = 69/274 (25%), Positives = 123/274 (44%), Gaps = 35/274 (12%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENR-GYAFVMYTTKEEAQLAIRIL 121 ++VG + D+ E L F AG I R+ + + GYA++ + +A+ A+ + Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72 Query: 122 NNYEIRPGKFIGVCVSLDNCRLFIGAIPKE--KKKEEILDE--MKKVTEGVVDVIVYPSA 177 N +E+ G+ I + S + L + K E+ +D + +++ A Sbjct: 73 N-FEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVA 131 Query: 178 TDKTKNRGFAFVEYESHRAAAMA----------RRKLIPGTFQLWGHTIQVDWADPEKEV 227 D+ +RGF FV +E+H AA A RK+ G F+ + E E+ Sbjct: 132 CDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFK--------SRREREAEL 183 Query: 228 DEETMQRVKVLYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD-------YAFVHFFN 280 ++ + YV+NL + E+ ++ F++F G + VK +RD + FV+F Sbjct: 184 GARALEFTNI-YVKNLPVDVDEQGLQDLFSQF--GKMLSVKVMRDNSGHSRCFGFVNFEK 240 Query: 281 REDAVAAMSVMNGKCIDGASIEVTLA-KPVNKEN 313 E+A A+ MNGK + G + A K V ++N Sbjct: 241 HEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQN 274 Score = 52.0 bits (123), Expect = 1e-06 Identities = 65/272 (23%), Positives = 112/272 (41%), Gaps = 30/272 (11%) Query: 63 VFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEFSGENRGYAFVMYTTKEEAQLAIRILN 122 +F+ + + L F G I ++ + G +RG+ FV + T E AQ AI +N Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMN 159 Query: 123 NYEIRPGK-FIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTE-GVVDVI-------- 172 + K F+G S +GA E + + V E G+ D+ Sbjct: 160 GMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLS 219 Query: 173 VYPSATDKTKNRGFAFVEYESHRAAAMA----RRKLIPGTFQLWGHTIQVDWADPEKEVD 228 V + +R F FV +E H A A K + G G + E + Sbjct: 220 VKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRR 279 Query: 229 EETMQRVKV-------LYVRNLMISTTEETIKAEFNKFKPGAVERVKKLRD------YAF 275 E M++ ++ LYV+NL S ++ ++ EF+ + G + K + + + F Sbjct: 280 FEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPY--GVITSAKVMTEGGHSKGFGF 337 Query: 276 VHFFNREDAVAAMSVMNGKCIDGASIEVTLAK 307 V F + E+A A++ MNG+ + + V LA+ Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYVALAQ 369 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.317 0.134 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,876,391 Number of Sequences: 37866 Number of extensions: 1136181 Number of successful extensions: 5584 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 129 Number of HSP's successfully gapped in prelim test: 127 Number of HSP's that attempted gapping in prelim test: 4822 Number of HSP's gapped (non-prelim): 601 length of query: 533 length of database: 18,247,518 effective HSP length: 107 effective length of query: 426 effective length of database: 14,195,856 effective search space: 6047434656 effective search space used: 6047434656 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.