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Search of human proteins with 21361820
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21361820 IFT46 [Homo sapiens]
(355 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21361820 IFT46 [Homo sapiens] 729 0.0
gi|42740903 MTERF domain containing 2 [Homo sapiens] 49 7e-06
gi|210032580 SET domain containing 1B [Homo sapiens] 45 1e-04
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 44 2e-04
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 43 5e-04
gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens] 42 0.001
gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens] 42 0.001
gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens] 42 0.001
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 41 0.001
gi|239756451 PREDICTED: hypothetical protein XP_002344991 [Homo ... 41 0.002
gi|239750982 PREDICTED: hypothetical protein XP_002347636 [Homo ... 41 0.002
gi|239745387 PREDICTED: hypothetical protein XP_002343486 [Homo ... 41 0.002
gi|55956788 nucleolin [Homo sapiens] 40 0.002
gi|119395727 cardiac calsequestrin 2 precursor [Homo sapiens] 40 0.004
gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens] 39 0.005
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 39 0.005
gi|115529449 upstream binding transcription factor, RNA polymera... 39 0.007
gi|115529451 upstream binding transcription factor, RNA polymera... 39 0.007
gi|7657671 upstream binding transcription factor, RNA polymerase... 39 0.007
gi|17402873 BRCA2 and CDKN1A-interacting protein isoform C [Homo... 39 0.007
gi|17402871 BRCA2 and CDKN1A-interacting protein isoform BCCIPbe... 39 0.007
gi|7706581 BRCA2 and CDKN1A-interacting protein isoform BCCIPalp... 39 0.007
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 38 0.012
gi|21735415 centromere protein B [Homo sapiens] 38 0.016
gi|7661622 hypothetical protein LOC25906 [Homo sapiens] 38 0.016
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 38 0.016
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 38 0.016
gi|13654270 LAS1-like [Homo sapiens] 38 0.016
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 37 0.021
gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens] 37 0.027
>gi|21361820 IFT46 [Homo sapiens]
Length = 355
Score = 729 bits (1881), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MADNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRE 60
MADNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRE
Sbjct: 1 MADNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRE 60
Query: 61 SQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADY 120
SQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADY
Sbjct: 61 SQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADY 120
Query: 121 EHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNL 180
EHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNL
Sbjct: 121 EHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPRPDGKPDNL 180
Query: 181 GLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAIDTWIESISEL 240
GLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAIDTWIESISEL
Sbjct: 181 GLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKNPKAIDTWIESISEL 240
Query: 241 HRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYIDMICAILDI 300
HRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYIDMICAILDI
Sbjct: 241 HRSKPPATVHYTRPMPDIDTLMQEWSPEFEELLGKVSLPTAEIDCSLAEYIDMICAILDI 300
Query: 301 PVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDMETLTFS 355
PVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDMETLTFS
Sbjct: 301 PVYKSRIQSLHLLFSLYSEFKNSQHFKALAEGKKAFTPSSNSTSQAGDMETLTFS 355
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 48.9 bits (115), Expect = 7e-06
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 18 REGMPQAPGHRGKDMDPVPPAPASLKCHQ------TPSHVLERVGWYRESQKHRKEKKET 71
R G Q P +G+ P P L+ + T +E +++ +E+ E+
Sbjct: 270 RLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESES 329
Query: 72 SQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
S +R + ++DDDD++D+ E D+D DDDDE+ + D D E
Sbjct: 330 STSDDKRASLDEDEDDDDEEDNDEDDNDEDDDDEDDDEAEDNDEDEDDDE 379
Score = 39.3 bits (90), Expect = 0.005
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEE 106
++ +DDD+DDD++ + D D DDD+EE
Sbjct: 356 NDEDDDDEDDDEAEDNDEDEDDDEEE 381
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
Query: 5 SSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQKH 64
S DE +EE+ + M P K P + + P+ LE E +K
Sbjct: 986 SVDEEDEESERERDRDMADTPCELAKR------DPKGVGVRRRPARPLELDSGGEEDEKE 1039
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDE 105
+++ S + E E++DDDDDDS + D +DD++
Sbjct: 1040 SLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDED 1080
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 44.3 bits (103), Expect = 2e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 79 GFSENEDDDDDDDDSSETDSDSDDDDEEHG 108
G E+++DDDDDDD + D D DD+DEE G
Sbjct: 257 GEDEDDEDDDDDDDDDDDDDDEDDEDEEDG 286
Score = 43.1 bits (100), Expect = 4e-04
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
++Q+ E E + E+EDD+DDDDD + D D D+DDE+
Sbjct: 236 DNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDED 282
Score = 39.7 bits (91), Expect = 0.004
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEH 107
ES + ++++ + +++DDDDDDDD E D D +D +EE+
Sbjct: 243 ESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDEDEEDGEEEN 290
Score = 36.6 bits (83), Expect = 0.035
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
+ + + + +E S + + G + +DD +D+D + D D DDDD++
Sbjct: 228 QRTDEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDD 275
Score = 32.7 bits (73), Expect = 0.51
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
E Q+H + ++ + +++DDDDDDD+ E + D ++++++
Sbjct: 249 EDQEHEDDGEDEDD---EDDDDDDDDDDDDDDEDDEDEEDGEEENQK 292
Score = 30.8 bits (68), Expect = 1.9
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
++ R +++ T SE +D + +DD + D + DDDD++
Sbjct: 223 KQKDIQRTDEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDD 270
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
E+EDD +D+DD + D DDDD++ E D D E
Sbjct: 252 EHEDDGEDEDD----EDDDDDDDDDDDDDDEDDEDEEDGE 287
Score = 30.0 bits (66), Expect = 3.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
S E +D + +D E + D DDDD++ + D D E
Sbjct: 244 SSEEGEDQEHEDDGEDEDDEDDDDDDDDDDDDDDEDDEDEE 284
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 42.7 bits (99), Expect = 5e-04
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 20 GMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQKHRKEKKETSQLTPQRG 79
G+ A G G DP PP A+ + + G SQ+ +E+ E P+
Sbjct: 1638 GLGLALGDAG---DPGPPDAAAPGPREGAAAAAAAAG--ESSQEDEEEELEL----PEEE 1688
Query: 80 FSENEDDDDDDDDSSETDSDSDDDDEE 106
++ED+DDD+DD E D D DDDDE+
Sbjct: 1689 AEDDEDEDDDEDDDDE-DDDEDDDDED 1714
>gi|83641870 nucleophosmin 1 isoform 3 [Homo sapiens]
Length = 259
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 36 PPAPASLKCHQTPSHVLER--VGWYRESQKHRKEKKETSQLT--------------PQRG 79
PP LKC P H+ + V +++ +E+++ L+ PQ+
Sbjct: 96 PPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKK 155
Query: 80 FS-----ENEDDDDDDDDSSETDSDSDDDDEEHGAPLE 112
+++DDD++DDD + D D DD++ E AP++
Sbjct: 156 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK 193
>gi|40353734 nucleophosmin 1 isoform 2 [Homo sapiens]
Length = 265
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 36 PPAPASLKCHQTPSHVLER--VGWYRESQKHRKEKKETSQLT--------------PQRG 79
PP LKC P H+ + V +++ +E+++ L+ PQ+
Sbjct: 96 PPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKK 155
Query: 80 FS-----ENEDDDDDDDDSSETDSDSDDDDEEHGAPLE 112
+++DDD++DDD + D D DD++ E AP++
Sbjct: 156 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK 193
>gi|10835063 nucleophosmin 1 isoform 1 [Homo sapiens]
Length = 294
Score = 41.6 bits (96), Expect = 0.001
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 21/98 (21%)
Query: 36 PPAPASLKCHQTPSHVLER--VGWYRESQKHRKEKKETSQLT--------------PQRG 79
PP LKC P H+ + V +++ +E+++ L+ PQ+
Sbjct: 96 PPVVLRLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGGGSKVPQKK 155
Query: 80 FS-----ENEDDDDDDDDSSETDSDSDDDDEEHGAPLE 112
+++DDD++DDD + D D DD++ E AP++
Sbjct: 156 VKLAADEDDDDDDEEDDDEDDDDDDFDDEEAEEKAPVK 193
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 41.2 bits (95), Expect = 0.001
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 83 NEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDP--ADYEHLPVSAEIKELFQYI---- 136
+ D DDDDDD S+ D DD+DEE +G D + +A ++EL + I
Sbjct: 1296 DSDYDDDDDDDSDDQGDEDDEDEEDKEDKKGKKTDICEDEDEGDQAASVEELEKQIEKLS 1355
Query: 137 ---SRYTPQLIDLDHKLK 151
S+Y +L D H L+
Sbjct: 1356 KQQSQYRRKLFDASHSLR 1373
Score = 35.8 bits (81), Expect = 0.060
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 61 SQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDE 105
S K ++ E + + E+++DD+ DD SE+DS+S+ D E
Sbjct: 600 SSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTE 644
Score = 33.9 bits (76), Expect = 0.23
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 13/88 (14%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDD----DDDDDSSETDSDSDDDDEEHGAP----- 110
ES + TS T G S ++ DD ++++D S +S+ DD D E A
Sbjct: 240 ESSSNSDSDSGTSSDTSSEGISSSDSDDLEEDEEEEDQSIEESEDDDSDSESEAQHKSNN 299
Query: 111 ---LEGAYDP-ADYEHLPVSAEIKELFQ 134
L G DP AD + A+ K + Q
Sbjct: 300 QVLLHGISDPKADGQKATEKAQEKRIHQ 327
Score = 33.9 bits (76), Expect = 0.23
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLE 112
+ EDD+DD+ D S+++SDS+ + + G+ E
Sbjct: 619 DEEDDEDDESDDSQSESDSNSESDTEGSEEE 649
Score = 33.1 bits (74), Expect = 0.39
Identities = 17/67 (25%), Positives = 31/67 (46%)
Query: 39 PASLKCHQTPSHVLERVGWYRESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDS 98
P + H P+ L +S + E S + E +++DD+DD+S ++ S
Sbjct: 574 PVKTQHHSHPAKSLVEQFRGTDSDIPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQS 633
Query: 99 DSDDDDE 105
+SD + E
Sbjct: 634 ESDSNSE 640
Score = 31.2 bits (69), Expect = 1.5
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 76 PQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
P SE+ ++D+++DD E + D +DD+ + + +D E
Sbjct: 599 PSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTE 644
Score = 30.8 bits (68), Expect = 1.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSD 101
ES + E S+ + SE EDDDD D D S++D++ +
Sbjct: 627 ESDDSQSESDSNSESDTEG--SEEEDDDDKDQDESDSDTEGE 666
Score = 30.4 bits (67), Expect = 2.5
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 28 RGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQKHRKEKKETSQLTPQRGFSENEDDD 87
RG D D +P + S ++ E + + + S + +E++D
Sbjct: 592 RGTDSD-IPSSKDSEDSNEDEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEED 650
Query: 88 DDDDDSSETDSDSDDD 103
DDD D E+DSD++ +
Sbjct: 651 DDDKDQDESDSDTEGE 666
Score = 30.4 bits (67), Expect = 2.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
+ E+DD+++D+ + D +SDD E + E + ++ E
Sbjct: 610 DEEEDDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEE 649
Score = 30.4 bits (67), Expect = 2.5
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPAD 119
++E++D++DD+ E+D + D + EG+ + D
Sbjct: 614 DDEEEDEEDDEDDESDDSQSESDSNSESDTEGSEEEDD 651
Score = 28.5 bits (62), Expect = 9.6
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDD-----DDDDDDSSETDSDSDDDDEE 106
E + ++ + S + S +E D ++DDDD + +SDSD + E+
Sbjct: 616 EEEDEEDDEDDESDDSQSESDSNSESDTEGSEEEDDDDKDQDESDSDTEGEK 667
>gi|239756451 PREDICTED: hypothetical protein XP_002344991 [Homo
sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE--------HGAPLEGAYD 116
R E E+ +L P+ E++DDDDDD E + + DDD+EE A EG +
Sbjct: 120 RLEPSESLELEPE------EEEDDDDDDEEEEELEDDDDEEELRRSFAGCRAANAEGCWA 173
Query: 117 PADYEHLPVS 126
P + P S
Sbjct: 174 PVEAGGSPTS 183
>gi|239750982 PREDICTED: hypothetical protein XP_002347636 [Homo
sapiens]
Length = 206
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE--------HGAPLEGAYD 116
R E E+ +L P+ E++DDDDDD E + + DDD+EE A EG +
Sbjct: 129 RLEPSESLELEPE------EEEDDDDDDEEEEELEDDDDEEELRRSFAGCRAANAEGCWA 182
Query: 117 PADYEHLPVS 126
P + P S
Sbjct: 183 PVEAGGSPTS 192
>gi|239745387 PREDICTED: hypothetical protein XP_002343486 [Homo
sapiens]
Length = 197
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE--------HGAPLEGAYD 116
R E E+ +L P+ E++DDDDDD E + + DDD+EE A EG +
Sbjct: 120 RLEPSESLELEPE------EEEDDDDDDEEEEELEDDDDEEELRRSFAGCRAANAEGCWA 173
Query: 117 PADYEHLPVS 126
P + P S
Sbjct: 174 PVEAGGSPTS 183
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 40.4 bits (93), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
E EDD+D+DDD E D D DD+D+E
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDE 262
Score = 39.3 bits (90), Expect = 0.005
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
++ED+DDDDD+ E D D DD++EE
Sbjct: 241 DDEDEDDDDDEDDEDDDDEDDEEEE 265
Score = 38.5 bits (88), Expect = 0.009
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEE 106
SE+EDD+DD+DD + D + DD +EE
Sbjct: 184 SEDEDDEDDEDDEDDDDDEEDDSEEE 209
Score = 38.1 bits (87), Expect = 0.012
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
E+++D+DDDDD + D D +DD+EE
Sbjct: 240 EDDEDEDDDDDEDDEDDDDEDDEEE 264
Score = 37.7 bits (86), Expect = 0.016
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
E +D+D+DDDD + + D D+DDEE
Sbjct: 239 EEDDEDEDDDDDEDDEDDDDEDDEE 263
Score = 37.7 bits (86), Expect = 0.016
Identities = 13/25 (52%), Positives = 20/25 (80%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
E+EDDDDD+DD + D D ++++EE
Sbjct: 243 EDEDDDDDEDDEDDDDEDDEEEEEE 267
Score = 37.0 bits (84), Expect = 0.027
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGA 109
E + +++ E + + +ED+DD+DD+ E D D ++DD E A
Sbjct: 161 EDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEA 210
Score = 36.6 bits (83), Expect = 0.035
Identities = 12/38 (31%), Positives = 26/38 (68%)
Query: 69 KETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
K+ +++ P + + ED+D+++DD E D D +DD+++
Sbjct: 219 KKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDD 256
Score = 36.6 bits (83), Expect = 0.035
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
E+E++DD+D+D + + D DDDDE+
Sbjct: 236 EDEEEDDEDEDDDDDEDDEDDDDED 260
Score = 35.4 bits (80), Expect = 0.078
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAE 128
+ ++DD+DD+D + D D +DD EE A + +PV A+
Sbjct: 183 ASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAK 230
Score = 35.0 bits (79), Expect = 0.10
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
++ ED D+++DD SE D + D+D++E +E A
Sbjct: 140 AKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPA 173
Score = 35.0 bits (79), Expect = 0.10
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPA 118
E EDDD ++D+ + D D D+D+ E A A PA
Sbjct: 147 EEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPA 183
Score = 35.0 bits (79), Expect = 0.10
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
+ +DDDD+DD+ + + D ++++EE P++ A
Sbjct: 244 DEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEA 276
Score = 33.5 bits (75), Expect = 0.30
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 3 DNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQ 62
D D+ EE++S+ E M P +GK V P A
Sbjct: 195 DEDDDDDEEDDSE--EEAMETTPA-KGKKAAKVVPVKA---------------------- 229
Query: 63 KHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAP 110
K+ E ++ + ++EDD+DDDD+ E + + ++++ AP
Sbjct: 230 KNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAP 277
Score = 32.3 bits (72), Expect = 0.66
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
S+ E+DDD ++D + + + +D+DE A ++ A
Sbjct: 145 SDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAA 178
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 17/59 (28%)
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDD-----------------SSETDSDSDDDDEE 106
+ KKE S E+E+DD+D+D+ +SE + D DD+D+E
Sbjct: 138 KNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDE 196
Score = 28.5 bits (62), Expect = 9.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 3 DNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLK 43
D+ DE EEE + E + +APG R K+M AP + K
Sbjct: 257 DDEDDEEEEEEEE--EEPVKEAPGKRKKEMAKQKAAPEAKK 295
>gi|119395727 cardiac calsequestrin 2 precursor [Homo sapiens]
Length = 399
Score = 39.7 bits (91), Expect = 0.004
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEE 106
++EDDDDDD+ E + DSDDDD+E
Sbjct: 375 DDEDDDDDDNSDEEDNDDSDDDDDE 399
>gi|86262149 zinc finger and BTB domain containing 7C [Homo sapiens]
Length = 619
Score = 39.3 bits (90), Expect = 0.005
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 79 GFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHLPVSAEI 129
G E++ +DDDDD+ + + D ++++EE + D AD E+LP +I
Sbjct: 133 GGEEDDKEDDDDDEDDDDEEDEEEEEEEEEDDDDDTEDFADQENLPDPQDI 183
Score = 34.3 bits (77), Expect = 0.17
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHGAP------LEGAYD--PADYE---------HLP 124
E +DDDD +D + + + D H +P E AY P D+ HL
Sbjct: 161 EEDDDDDTEDFADQENLPDPQDISCHQSPSKTDHLTEKAYSDTPRDFPDSFQAGSPGHLG 220
Query: 125 VSAE--IKELFQYISRYTPQLIDLDHKLKPFIPDFIPAV--GDIDAFLKVPRPDGKPDNL 180
V + I+ L + + D L PF PDF P + GD AF ++P L
Sbjct: 221 VIRDFSIESLLRENLYPKANIPDRRPSLSPFAPDFFPHLWPGDFGAFAQLPEQPMDSGPL 280
Query: 181 GLLV 184
L++
Sbjct: 281 DLVI 284
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 39.3 bits (90), Expect = 0.005
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 34 PVPPAPASLKCHQTPSHVLERVGWYRESQKHRKEKKETSQL------TPQRGFSENED-- 85
PVPP A + H+L H +++++ ++L TP + + D
Sbjct: 139 PVPPPLAPAQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEGPDADPS 198
Query: 86 -----DDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPA 118
DD D+D E+D ++D +D E G P EG P+
Sbjct: 199 LSAAPDDRGDEDDEESDDETDGEDGEGGGPGEGQAPPS 236
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPAD 119
+S + + E+S ENE+DD+D+DD + D D D++ E + + D +D
Sbjct: 664 DSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSD 723
Score = 36.2 bits (82), Expect = 0.046
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPA 118
R+S + S T + SE+E+DD++D+D + D D +++D+E+G E D +
Sbjct: 616 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDED--DEDEDEEEEDDENGDSSEDGGDSS 673
Query: 119 D 119
+
Sbjct: 674 E 674
Score = 35.0 bits (79), Expect = 0.10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 66 KEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
K + T Q + + ED+DD+D+D E D ++ D E+ G E +
Sbjct: 628 KSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 676
Score = 33.9 bits (76), Expect = 0.23
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
+ ++ E ++S+ S +ED+ +D D++ E D D DDD+++
Sbjct: 654 DEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 29.6 bits (65), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDD 104
ES++ +E ++ + EN D +D DSSE+ S+ + +D
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESED 683
Score = 29.3 bits (64), Expect = 5.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
R + + + E +E + + E++DD++ DSSE DS + E
Sbjct: 631 RTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPAD 119
+S + + E+S ENE+DD+D+DD + D D D++ E + + D +D
Sbjct: 664 DSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSD 723
Score = 36.2 bits (82), Expect = 0.046
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPA 118
R+S + S T + SE+E+DD++D+D + D D +++D+E+G E D +
Sbjct: 616 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDED--DEDEDEEEEDDENGDSSEDGGDSS 673
Query: 119 D 119
+
Sbjct: 674 E 674
Score = 35.0 bits (79), Expect = 0.10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 66 KEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
K + T Q + + ED+DD+D+D E D ++ D E+ G E +
Sbjct: 628 KSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 676
Score = 33.9 bits (76), Expect = 0.23
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
+ ++ E ++S+ S +ED+ +D D++ E D D DDD+++
Sbjct: 654 DEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 700
Score = 29.6 bits (65), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDD 104
ES++ +E ++ + EN D +D DSSE+ S+ + +D
Sbjct: 639 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESED 683
Score = 29.3 bits (64), Expect = 5.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
R + + + E +E + + E++DD++ DSSE DS + E
Sbjct: 631 RTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 678
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 38.9 bits (89), Expect = 0.007
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPAD 119
+S + + E+S ENE+DD+D+DD + D D D++ E + + D +D
Sbjct: 701 DSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSGDSSD 760
Score = 36.2 bits (82), Expect = 0.046
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPA 118
R+S + S T + SE+E+DD++D+D + D D +++D+E+G E D +
Sbjct: 653 RKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDED--DEDEDEEEEDDENGDSSEDGGDSS 710
Query: 119 D 119
+
Sbjct: 711 E 711
Score = 35.0 bits (79), Expect = 0.10
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 66 KEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGA 114
K + T Q + + ED+DD+D+D E D ++ D E+ G E +
Sbjct: 665 KSSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESS 713
Score = 33.9 bits (76), Expect = 0.23
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
+ ++ E ++S+ S +ED+ +D D++ E D D DDD+++
Sbjct: 691 DEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDD 737
Score = 29.6 bits (65), Expect = 4.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDD 104
ES++ +E ++ + EN D +D DSSE+ S+ + +D
Sbjct: 676 ESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESED 720
Score = 29.3 bits (64), Expect = 5.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
R + + + E +E + + E++DD++ DSSE DS + E
Sbjct: 668 RTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSE 715
>gi|17402873 BRCA2 and CDKN1A-interacting protein isoform C [Homo
sapiens]
Length = 292
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 62 QKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
Q+ +E+KE ENED+DDDD D E D + + DEE E AY +D +
Sbjct: 23 QRDEEEEKEV----------ENEDEDDDDSD-KEKDEEDEVIDEEVNIEFE-AYSLSDND 70
Query: 122 HLPVSAEIKELFQYISRYTPQLIDL 146
+ + +++LF T +L DL
Sbjct: 71 YDGIKKLLQQLFLKAPVNTAELTDL 95
>gi|17402871 BRCA2 and CDKN1A-interacting protein isoform BCCIPbeta
[Homo sapiens]
Length = 314
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 62 QKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
Q+ +E+KE ENED+DDDD D E D + + DEE E AY +D +
Sbjct: 23 QRDEEEEKEV----------ENEDEDDDDSD-KEKDEEDEVIDEEVNIEFE-AYSLSDND 70
Query: 122 HLPVSAEIKELFQYISRYTPQLIDL 146
+ + +++LF T +L DL
Sbjct: 71 YDGIKKLLQQLFLKAPVNTAELTDL 95
>gi|7706581 BRCA2 and CDKN1A-interacting protein isoform BCCIPalpha
[Homo sapiens]
Length = 322
Score = 38.9 bits (89), Expect = 0.007
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 62 QKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYE 121
Q+ +E+KE ENED+DDDD D E D + + DEE E AY +D +
Sbjct: 23 QRDEEEEKEV----------ENEDEDDDDSD-KEKDEEDEVIDEEVNIEFE-AYSLSDND 70
Query: 122 HLPVSAEIKELFQYISRYTPQLIDL 146
+ + +++LF T +L DL
Sbjct: 71 YDGIKKLLQQLFLKAPVNTAELTDL 95
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 38.1 bits (87), Expect = 0.012
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 59 RESQKHRKEKKETSQLTPQRGFSENEDDD---DDDDDSSETDSDSDDDDEEHGAPLEGAY 115
R+ Q R ++ S G+S E+DD +DD E D D + +EE AP+E
Sbjct: 84 RKPQVPRFPEETESHEEDNGGWSSFEEDDYESPNDDQDGEDDGDYESPNEEEEAPVE--- 140
Query: 116 DPADYEHLPVSAE 128
D ADYE P + E
Sbjct: 141 DDADYEPPPSNDE 153
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 37.7 bits (86), Expect = 0.016
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 32/137 (23%)
Query: 3 DNSSDEYEEENSKVLREGMPQAPGHRGKDMDPVPPAPASLKCHQTPSHVLERVGWYRESQ 62
D SDE EEE+ + EG+ +G V+E G +
Sbjct: 453 DVDSDEEEEEDEESSSEGLEAEDWAQG---------------------VVEAGGSF--GA 489
Query: 63 KHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEH 122
+E+ + L G +++ D +++DD E D D DDDD+E + D
Sbjct: 490 YGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDE---------EDGDEVP 540
Query: 123 LPVSAEIKELFQYISRY 139
+P E F + RY
Sbjct: 541 VPSFGEAMAYFAMVKRY 557
>gi|7661622 hypothetical protein LOC25906 [Homo sapiens]
Length = 121
Score = 37.7 bits (86), Expect = 0.016
Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 52 LERVGWYRESQKHRK-----EKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
+E ++ Q+H+ +K+ + + + SE+ DD++++DD + DS+ D +D+E
Sbjct: 25 VEETELQQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDE 84
Query: 107 HGAPLEGAYDPADYEHLPVSAEIKEL 132
++ + DY P E+ E+
Sbjct: 85 ---DMQDMDEMNDYNESPDDGEVNEV 107
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 37.7 bits (86), Expect = 0.016
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 83 NEDDDDDDDDSSETDSDSDDDDEEHGA 109
++DDDDDDDD + + D DD D +H A
Sbjct: 258 SDDDDDDDDDDDDDNIDDDDGDNDHEA 284
Score = 37.4 bits (85), Expect = 0.021
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEE 106
S+++DDDDDDDD D D D+D E
Sbjct: 258 SDDDDDDDDDDDDDNIDDDDGDNDHE 283
Score = 35.8 bits (81), Expect = 0.060
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHG 108
+++DDDDDDDD + D D D+D E G
Sbjct: 260 DDDDDDDDDDDDNIDDDDGDNDHEALG 286
Score = 35.4 bits (80), Expect = 0.078
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 79 GFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYD 116
G S DDDDDDD + D + DDDD ++ G D
Sbjct: 252 GSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGD 289
Score = 32.7 bits (73), Expect = 0.51
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 72 SQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDE 105
SQL S + DDDDDD + D D+ DDD+
Sbjct: 244 SQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDD 277
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 37.7 bits (86), Expect = 0.016
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 83 NEDDDDDDDDSSETDSDSDDDDEEHGA 109
++DDDDDDDD + + D DD D +H A
Sbjct: 298 SDDDDDDDDDDDDDNIDDDDGDNDHEA 324
Score = 37.4 bits (85), Expect = 0.021
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 81 SENEDDDDDDDDSSETDSDSDDDDEE 106
S+++DDDDDDDD D D D+D E
Sbjct: 298 SDDDDDDDDDDDDDNIDDDDGDNDHE 323
Score = 35.8 bits (81), Expect = 0.060
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 82 ENEDDDDDDDDSSETDSDSDDDDEEHG 108
+++DDDDDDDD + D D D+D E G
Sbjct: 300 DDDDDDDDDDDDNIDDDDGDNDHEALG 326
Score = 35.4 bits (80), Expect = 0.078
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 79 GFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYD 116
G S DDDDDDD + D + DDDD ++ G D
Sbjct: 292 GSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGD 329
Score = 32.7 bits (73), Expect = 0.51
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 72 SQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDE 105
SQL S + DDDDDD + D D+ DDD+
Sbjct: 284 SQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDD 317
>gi|13654270 LAS1-like [Homo sapiens]
Length = 734
Score = 37.7 bits (86), Expect = 0.016
Identities = 16/70 (22%), Positives = 35/70 (50%)
Query: 65 RKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHLP 124
++E+KE ++ P + E E+DD ++++ E D D +++D P + E+
Sbjct: 565 KEEEKEEKEVLPDQVEEEEENDDQEEEEEDEDDEDDEEEDRMEVGPFSTGQESPTAENAR 624
Query: 125 VSAEIKELFQ 134
+ A+ + Q
Sbjct: 625 LLAQKRGALQ 634
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 37.4 bits (85), Expect = 0.021
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 63 KHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
KH++ K+ + + E E++DDDDDD E D DD+DEE
Sbjct: 213 KHQESVKKKGR---EEEDMEEEENDDDDDDDDEEDGVFDDEDEE 253
Score = 36.2 bits (82), Expect = 0.046
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 58 YRESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDP 117
Y+++Q +E S + + + + +++D + E D D DDDDEE +G +D
Sbjct: 195 YKDTQSVSAIGEEKSHESKHQESVKKKGREEEDMEEEENDDDDDDDDEE-----DGVFDD 249
Query: 118 ADYEHLPVSAEIKELFQYISR 138
D E + +++ + Q R
Sbjct: 250 EDEEEENIESKVTKPVQIQKR 270
>gi|169202818 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 488
Score = 37.0 bits (84), Expect = 0.027
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 66 KEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEHGAPLEGAYDPADYEHL 123
K+KKE + E E D++D+D+ + D + D DDE+ L A P D L
Sbjct: 318 KKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQSHWQLFLACCPEDQRRL 375
Score = 35.8 bits (81), Expect = 0.060
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 60 ESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEEH 107
++ K +K+K+E + E +D++D+D++ E + + DD++ H
Sbjct: 313 KAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEEDDEDEEEDGDDEQSH 360
Score = 32.0 bits (71), Expect = 0.87
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 58 YRESQKHRKEKKETSQLTPQRGFSENEDDDDDDDDSSETDSDSDDDDEE 106
YR KH + + E E++++D++D E + D+D+E+
Sbjct: 298 YRAKGKHDAANNGVVKAAKSKKKKEEEENEEDEEDEEEEKDEEDEDEED 346
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.130 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,001,916
Number of Sequences: 37866
Number of extensions: 840728
Number of successful extensions: 9803
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 5662
Number of HSP's gapped (non-prelim): 2014
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.