Guide to the Human Genome
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Name: GOLPH3L Sequence: fasta or formatted (285aa) NCBI GI: 21361716
Description:

Golgi phosphoprotein 3-like

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         12           2
 C cysteine            0.4          1           1
 D aspartate           7.4         21           2
 E glutamate           9.5         27           2
 F phenylalanine       2.1          6           1
 G glycine             3.9         11           2
 H histidine           1.4          4           1
 I isoleucine          3.9         11           1
 K lysine              8.8         25           2
 L leucine            13.3         38           3
 M methionine          3.2          9           1
 N asparagine          4.6         13           1
 P proline             3.5         10           2
 Q glutamine           2.5          7           1
 R arginine            6.3         18           2
 S serine              6.7         19           2
 T threonine           9.1         26           2
 V valine              6.0         17           1
 W tryptophan          2.1          6           1
 Y tyrosine            1.4          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Golgi phosphoprotein 3-like 
GOLPH3                0.671   golgi phosphoprotein 3 
PCDHB10               0.013   protocadherin beta 10 precursor 
PCDHB9                0.013   protocadherin beta 9 precursor 
SP100                 0.011   nuclear antigen Sp100 isoform 2 
WDR36                 0.011   WD repeat domain 36 
DNAH5                 0.011   dynein, axonemal, heavy chain 5 
ABCA4                 0.011   ATP-binding cassette, sub-family A member 4 
LOC645490             0.009   PREDICTED: similar to hCG1991922 
LOC645490             0.009   PREDICTED: similar to hCG1991922 
PCDHB11               0.009   protocadherin beta 11 precursor 
RSAD1                 0.009   radical S-adenosyl methionine domain containing 1 [Ho...
PCDHB2                0.009   protocadherin beta 2 precursor 
SP100                 0.009   nuclear antigen Sp100 isoform 1 
CCDC7                 0.009   coiled-coil domain containing 7 
CCDC7                 0.009   coiled-coil domain containing 7 
PRPF40A               0.009   formin binding protein 3 
MDN1                  0.007   MDN1, midasin homolog 
HMGB1L1               0.006   high-mobility group box 1-like 1 
SR140                 0.006   U2-associated SR140 protein 
CGN                   0.006   cingulin 
LATS1                 0.006   LATS homolog 1 
PCDHB12               0.006   protocadherin beta 12 precursor 
C3orf67               0.006   hypothetical protein LOC200844 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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