Guide to the Human Genome
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Name: PCDHB2 Sequence: fasta or formatted (798aa) NCBI GI: 9256612
Description:

protocadherin beta 2 precursor

Referenced in:

Cadherins and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         61           2
 C cysteine            1.1          9           1
 D aspartate           6.0         48           2
 E glutamate           6.4         51           2
 F phenylalanine       4.9         39           2
 G glycine             6.3         50           3
 H histidine           1.4         11           1
 I isoleucine          4.1         33           2
 K lysine              2.8         22           2
 L leucine            12.7        101           3
 M methionine          0.8          6           1
 N asparagine          4.6         37           2
 P proline             6.0         48           2
 Q glutamine           5.0         40           1
 R arginine            5.3         42           2
 S serine              7.9         63           2
 T threonine           5.9         47           2
 V valine              8.9         71           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.1         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protocadherin beta 2 precursor 
PCDHB3                0.797   protocadherin beta 3 precursor 
PCDHB14               0.782   protocadherin beta 14 precursor 
PCDHB16               0.759   protocadherin beta 16 precursor 
PCDHB7                0.756   protocadherin beta 7 precursor 
PCDHB6                0.753   protocadherin beta 6 precursor 
PCDHB15               0.750   protocadherin beta 15 precursor 
PCDHB11               0.746   protocadherin beta 11 precursor 
PCDHB4                0.744   protocadherin beta 4 precursor 
PCDHB10               0.744   protocadherin beta 10 precursor 
PCDHB5                0.743   protocadherin beta 5 precursor 
PCDHB8                0.743   protocadherin beta 8 precursor 
PCDHB12               0.740   protocadherin beta 12 precursor 
PCDHB9                0.738   protocadherin beta 9 precursor 
PCDHB13               0.735   protocadherin beta 13 precursor 
PCDHB1                0.496   protocadherin beta 1 precursor 
PCDHGA1               0.402   protocadherin gamma subfamily A, 1 isoform 1 precurs...
PCDHGA1               0.402   protocadherin gamma subfamily A, 1 isoform 2 precurs...
PCDHGA7               0.397   protocadherin gamma subfamily A, 7 isoform 1 precurs...
PCDHGA7               0.397   protocadherin gamma subfamily A, 7 isoform 2 precurs...
PCDHGA5               0.393   protocadherin gamma subfamily A, 5 isoform 2 precurs...
PCDHGA5               0.393   protocadherin gamma subfamily A, 5 isoform 1 precurs...
PCDHGB5               0.391   protocadherin gamma subfamily B, 5 isoform 2 precurs...
PCDHGA9               0.391   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGB5               0.391   protocadherin gamma subfamily B, 5 isoform 1 precurs...
PCDHGA9               0.391   protocadherin gamma subfamily A, 9 isoform 2 precurs...
PCDHGA10              0.390   protocadherin gamma subfamily A, 10 isoform 1 precur...
PCDHGA10              0.390   protocadherin gamma subfamily A, 10 isoform 2 precur...
PCDHGA11              0.389   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.389   protocadherin gamma subfamily A, 11 isoform 1 precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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