Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 113951734
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113951734 steroid receptor RNA activator 1 [Homo sapiens] 480 e-136
gi|11386183 WAS protein family, member 2 [Homo sapiens] 45 4e-05
gi|7706501 WW domain binding protein 11 [Homo sapiens] 44 2e-04
gi|50428940 mediator complex subunit 25 [Homo sapiens] 41 0.001
gi|13273315 homeobox B4 [Homo sapiens] 41 0.001
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 41 0.001
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 41 0.001
gi|30795231 brain abundant, membrane attached signal protein 1 [... 40 0.001
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 40 0.001
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 40 0.001
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 40 0.001
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 0.002
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 40 0.002
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 40 0.002
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 40 0.002
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 39 0.003
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 39 0.003
gi|39812378 RAN binding protein 9 [Homo sapiens] 39 0.003
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 39 0.003
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 39 0.003
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 39 0.003
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 39 0.003
gi|4507691 transformation/transcription domain-associated protei... 39 0.004
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 39 0.004
gi|60460889 Myb protein P42POP [Homo sapiens] 39 0.004
gi|57242766 hypothetical protein LOC168455 [Homo sapiens] 39 0.004
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 39 0.005
gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [H... 39 0.005
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 39 0.005
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ... 39 0.005
>gi|113951734 steroid receptor RNA activator 1 [Homo sapiens]
Length = 236
Score = 480 bits (1236), Expect = e-136
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS 60
MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS
Sbjct: 1 MTRCPAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS 60
Query: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ 120
PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ
Sbjct: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQ 120
Query: 121 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH 180
ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH
Sbjct: 121 ALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSSHRWDAADDIH 180
Query: 181 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS 236
RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS
Sbjct: 181 RSLMVDHVTEVSQWMVGVKRLIAEKRSLFSEEAANEEKSAATAEKNHTIPGFQQAS 236
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 45.4 bits (106), Expect = 4e-05
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 30 PPQFSYGLQTQAG----GPRRSLLTKRV---AAPQDGSPRVPASETSPGPPPMGPPPPS- 81
P +FSY + Q G GP+RS + AP GSP P +P P P PPPP
Sbjct: 271 PAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMI 330
Query: 82 SKAPRSPPVGSGPASGVEPTSFP 104
P PPVG G P S P
Sbjct: 331 GIPPPPPPVGFGSPGTPPPPSPP 353
Score = 34.7 bits (78), Expect = 0.073
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 54 AAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEP---------TSFP 104
AA P P S+ + G PP PPPP P P G+ + P +S P
Sbjct: 372 AADYPTLPPPPLSQPTGGAPPPPPPPPPPGPPPPPFTGADGQPAIPPPLSDTTKPKSSLP 431
Query: 105 VESEAVMEDVLRPLEQA-----LEDCRGHTRKQVCDD-----ISRRLAL 143
S+A D+L + Q +E+ R ++ V + +SRR+A+
Sbjct: 432 AVSDA-RSDLLSAIRQGFQLRRVEEQREQEKRDVVGNDVATILSRRIAV 479
Score = 31.6 bits (70), Expect = 0.62
Identities = 16/49 (32%), Positives = 17/49 (34%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P P P PPP PPP + PP S P G P P
Sbjct: 348 PPPSPPSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPP 396
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 43.5 bits (101), Expect = 2e-04
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 50 TKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVG--SGPASGVEP 100
+++ A PQ P + PGPPP+GPPP P PP G GP G P
Sbjct: 388 SQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPPGPPPGAPP 440
Score = 34.7 bits (78), Expect = 0.073
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 15/61 (24%)
Query: 59 GSPRVPASETSPGPPPMGPP-------PPSSKAPRS--------PPVGSGPASGVEPTSF 103
G P P PGPPP GPP PP PR PP+G P P
Sbjct: 469 GPPPGPPPGLPPGPPPRGPPPRLPPPAPPGIPPPRPGMMRPPLVPPLGPAPPGLFPPAPL 528
Query: 104 P 104
P
Sbjct: 529 P 529
Score = 34.3 bits (77), Expect = 0.096
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 59 GSPRVPASETSPGPPPMGPPPP 80
G PR+P PGPPP GPPPP
Sbjct: 189 GVPRLPPGRKPPGPPP-GPPPP 209
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 50 TKRVAAPQDGSPR-VPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEP 100
T ++ Q P+ VP S+ PPM PPP P P GP +G+ P
Sbjct: 383 TSTASSQQQAPPQSVPPSQIQA--PPMPGPPPLGPPPAPPLRPPGPPTGLPP 432
Score = 30.0 bits (66), Expect = 1.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 56 PQDGSPRVPASETSPGPPPMGPP--PPSSKAPRSPP 89
P G P P PGPPP PP PP PR PP
Sbjct: 462 PPPGRPPGPP----PGPPPGLPPGPPPRGPPPRLPP 493
Score = 28.5 bits (62), Expect = 5.3
Identities = 14/30 (46%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 70 PGPPPMGPP-----PPSSKAPRSPPVGSGP 94
PGPPP PP PP P PP G P
Sbjct: 460 PGPPPGRPPGPPPGPPPGLPPGPPPRGPPP 489
Score = 27.7 bits (60), Expect = 9.0
Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 24/61 (39%)
Query: 61 PRVPASETSPGPPPMGPP---------------------PPSSKAPRSPPVGSGPASGVE 99
P P + PGPPP PP PP + P PP GP G+
Sbjct: 423 PPGPPTGLPPGPPPGAPPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPP---GPPPGLP 479
Query: 100 P 100
P
Sbjct: 480 P 480
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 40.8 bits (94), Expect = 0.001
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 43 GPRRSLLTK-RVAAPQDGSP--RVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVE 99
GPR S +T + AAP G P + PA + PGPP PPP+S+ V P SG+
Sbjct: 300 GPRFSPITPLQQAAPGVGPPFSQAPAPQLPPGPPGAPKPPPASQPSLVSTVA--PGSGLA 357
Query: 100 PTSFP 104
PT+ P
Sbjct: 358 PTAQP 362
Score = 28.5 bits (62), Expect = 5.3
Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 11/85 (12%)
Query: 26 GWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQD----------GSPRVPASETSPGPPPM 75
G PP L+ QA P ++LL R PQ G P+ + P P
Sbjct: 561 GQQAPPGLGPILEDQAR-PSQNLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGAPQ 619
Query: 76 GPPPPSSKAPRSPPVGSGPASGVEP 100
GPP +S P P+ G P
Sbjct: 620 GPPGAASGPPPPGPILRPQNPGANP 644
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 40.8 bits (94), Expect = 0.001
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 38 QTQAGGPRRSLLT-KRVAAPQDGSPRVPASETSPGPPPMGPPPP--SSKAPRSPPVGS 92
Q +AG RR+ T +R AA +D P P P PPP PPPP S +AP PP G+
Sbjct: 49 QPEAGFGRRAACTVQRYAACRDPGPPPP-----PPPPPPPPPPPGLSPRAPAPPPAGA 101
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVG--SGPASGVEPTSFPVES---EAV 110
P+ G+ A GPPP P SS A PP G PA+ E S +++ E +
Sbjct: 2 PRKGTQPSTARRREEGPPPPSPDGASSDAEPEPPSGRTESPATAAETASEELDNRSLEEI 61
Query: 111 MEDVLRPLEQALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSS 170
+ + P A+ + G R + +++ + +AG K+ P KR + ++ S
Sbjct: 62 LNSIPPPPPPAMTNEAGAPRLMITHIVNQNF----KSYAGEKILGPFHKRFSCIIGPNGS 117
Query: 171 HRWDAADDI 179
+ + D +
Sbjct: 118 GKSNVIDSM 126
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVG--SGPASGVEPTSFPVES---EAV 110
P+ G+ A GPPP P SS A PP G PA+ E S +++ E +
Sbjct: 2 PRKGTQPSTARRREEGPPPPSPDGASSDAEPEPPSGRTESPATAAETASEELDNRSLEEI 61
Query: 111 MEDVLRPLEQALEDCRGHTRKQVCDDISRRLALLQEQWAGGKLSIPVKKRMALLVQELSS 170
+ + P A+ + G R + +++ + +AG K+ P KR + ++ S
Sbjct: 62 LNSIPPPPPPAMTNEAGAPRLMITHIVNQNF----KSYAGEKILGPFHKRFSCIIGPNGS 117
Query: 171 HRWDAADDI 179
+ + D +
Sbjct: 118 GKSNVIDSM 126
>gi|30795231 brain abundant, membrane attached signal protein 1
[Homo sapiens]
Length = 227
Score = 40.4 bits (93), Expect = 0.001
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGP----PPPSSKAPRSPPVGSGPA 95
+ G P+++ AA + S PAS++ PG P P +++AP S P GPA
Sbjct: 144 EEGEPKKTEAPAAPAAQETKSDGAPASDSKPGSSEAAPSSKETPAATEAPSSTPKAQGPA 203
Query: 96 SGVEPTSFPVESEAVMED 113
+ E PVE+ A D
Sbjct: 204 ASAEEPK-PVEAPAANSD 220
Score = 34.3 bits (77), Expect = 0.096
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 13/96 (13%)
Query: 19 KPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGS------------PRVPAS 66
+P + G P Q + G + G + + K A + P+ P
Sbjct: 47 EPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQ 106
Query: 67 E-TSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPT 101
E +PGP G P +++A +P + PA+G EP+
Sbjct: 107 EQAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPS 142
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 53 VAAPQDGSPRVPASETSPGPPPM--GPPPPSSKAPRSPPV 90
++ P GSP T+P PPP+ PPPP S AP PPV
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 31.2 bits (69), Expect = 0.81
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 42 GGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP--------------SSKAPRS 87
GG RSL + PQ G P + ++ PP G P KAP S
Sbjct: 1080 GGTGRSLSSPNCFGPQPGGPEMRRVNSAGRAPPGGLHAPRLSLEGAARGAAEAKHKAPGS 1139
Query: 88 PPVGSGPASGVEPTS-----FPVESEAVMEDVLRPLEQALEDCRGHTRK 131
G PA+G P + P+ + V P+ C G RK
Sbjct: 1140 ADYGFAPAAGRSPYTTTRYGSPINTFTVRPGTRHPISYV---CSGAHRK 1185
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 43 GPRRSLLTKRVAAPQDGSPRVPASETSPGP----PPMGPPPPSSKAPRSPPVG 91
G +S +R P P P + P P PP PP P ++ PP G
Sbjct: 377 GQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAG 429
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 54 AAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPV 105
A+P+ G + A E + PPP P PP AP PP PA + P + P+
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPP--PAPPLPP----PAPPLPPAAPPL 417
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPRVPA-SETSPGPPPM-GPPPPSSKAPRSPPVGSGPASG 97
+A P +L + + P D P P + +P PPP+ P PP+ +P + P G
Sbjct: 195 EALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPASPHTVGTRLFPPGG 254
Query: 98 V 98
V
Sbjct: 255 V 255
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 53 VAAPQDGSPRVPASETSPGPPPM--GPPPPSSKAPRSPPV 90
++ P GSP T+P PPP+ PPPP S AP PPV
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 31.2 bits (69), Expect = 0.81
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 42 GGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP--------------SSKAPRS 87
GG RSL + PQ G P + ++ PP G P KAP S
Sbjct: 1080 GGTGRSLSSPNCFGPQPGGPEMRRVNSAGRAPPGGLHAPRLSLEGAARGAAEAKHKAPGS 1139
Query: 88 PPVGSGPASGVEPTS-----FPVESEAVMEDVLRPLEQALEDCRGHTRK 131
G PA+G P + P+ + V P+ C G RK
Sbjct: 1140 ADYGFAPAAGRSPYTTTRYGSPINTFTVRPGTRHPISYV---CSGAHRK 1185
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 43 GPRRSLLTKRVAAPQDGSPRVPASETSPGP----PPMGPPPPSSKAPRSPPVG 91
G +S +R P P P + P P PP PP P ++ PP G
Sbjct: 377 GQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAG 429
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 54 AAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPV 105
A+P+ G + A E + PPP P PP AP PP PA + P + P+
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPP--PAPPLPP----PAPPLPPAAPPL 417
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPRVPA-SETSPGPPPM-GPPPPSSKAPRSPPVGSGPASG 97
+A P +L + + P D P P + +P PPP+ P PP+ +P + P G
Sbjct: 195 EALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPASPHTVGTRLFPPGG 254
Query: 98 V 98
V
Sbjct: 255 V 255
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 40.4 bits (93), Expect = 0.001
Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 53 VAAPQDGSPRVPASETSPGPPPM--GPPPPSSKAPRSPPV 90
++ P GSP T+P PPP+ PPPP S AP PPV
Sbjct: 154 ISEPPGGSPLPSPPSTAPPPPPLLLEPPPPPSMAPPPPPV 193
Score = 31.2 bits (69), Expect = 0.81
Identities = 29/109 (26%), Positives = 38/109 (34%), Gaps = 22/109 (20%)
Query: 42 GGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP--------------SSKAPRS 87
GG RSL + PQ G P + ++ PP G P KAP S
Sbjct: 1080 GGTGRSLSSPNCFGPQPGGPEMRRVNSAGRAPPGGLHAPRLSLEGAARGAAEAKHKAPGS 1139
Query: 88 PPVGSGPASGVEPTS-----FPVESEAVMEDVLRPLEQALEDCRGHTRK 131
G PA+G P + P+ + V P+ C G RK
Sbjct: 1140 ADYGFAPAAGRSPYTTTRYGSPINTFTVRPGTRHPISYV---CSGAHRK 1185
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 43 GPRRSLLTKRVAAPQDGSPRVPASETSPGP----PPMGPPPPSSKAPRSPPVG 91
G +S +R P P P + P P PP PP P ++ PP G
Sbjct: 377 GQSQSQADERAGTPPPAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAG 429
Score = 29.6 bits (65), Expect = 2.4
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 54 AAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPV 105
A+P+ G + A E + PPP P PP AP PP PA + P + P+
Sbjct: 372 ASPRLGQSQSQADERAGTPPPAPPLPP--PAPPLPP----PAPPLPPAAPPL 417
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPRVPA-SETSPGPPPM-GPPPPSSKAPRSPPVGSGPASG 97
+A P +L + + P D P P + +P PPP+ P PP+ +P + P G
Sbjct: 195 EALSPPHTLSSPSIPTPPDFIPPAPPLAFLAPPPPPVPAPAPPAPASPHTVGTRLFPPGG 254
Query: 98 V 98
V
Sbjct: 255 V 255
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 40.0 bits (92), Expect = 0.002
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLT--KRVAAPQDG----SPRVPASETSPGPP- 73
GNK +G PP G Q G + K P G SPR P + PP
Sbjct: 44 GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 103
Query: 74 ----PMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P GPPPP K PP G G P P
Sbjct: 104 GGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKP 138
Score = 39.7 bits (91), Expect = 0.002
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPP--PMGPP 78
GN+ +G PP G Q G ++ PQ P+ S +S PP P GPP
Sbjct: 166 GNQPQGPPPPPGKPQGPPPQGG--KKPQGPPPPGKPQGPPPQGDKSRSSQSPPGKPQGPP 223
Query: 79 PPSSKAPRSPPVGSGPASGVEP 100
P P+ PP G G P
Sbjct: 224 PQGGNQPQGPPPPPGKPQGPPP 245
Score = 37.7 bits (86), Expect = 0.009
Identities = 29/90 (32%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 21 GNKERGWNDPPQFSYGLQTQAG----GPRRSLLTKRVAAPQDGS-PRVPASETSP-GPPP 74
G+K R PP G Q G GP + PQ G+ P+ P P GPPP
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPP 143
Query: 75 MGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
G S ++P P G P G +P P
Sbjct: 144 QGDKSRSPRSPPGKPQGPPPQGGNQPQGPP 173
Score = 37.7 bits (86), Expect = 0.009
Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPP--PMGPP 78
GN+ +G PP G Q G R PQ P+ S + PP P GPP
Sbjct: 105 GNQPQGPPPPPGKPQGPPPQGGN--RPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP 162
Query: 79 PPSSKAPRSPPVGSGPASGVEP 100
P P+ PP G G P
Sbjct: 163 PQGGNQPQGPPPPPGKPQGPPP 184
Score = 35.0 bits (79), Expect = 0.056
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP 80
GNK +G PP G Q G +S A G P+ P + G P GPPPP
Sbjct: 248 GNKPQG-PPPPGKPQGPPAQGGSKSQS------ARSPPGKPQGPPQQE--GNNPQGPPPP 298
Query: 81 SS---KAPRSPPVGS-----GPASGVEPTSFP 104
+ + P++PP G P G P+ P
Sbjct: 299 AGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 330
Score = 34.7 bits (78), Expect = 0.073
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 59 GSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
G+P+ P+ + G P GPPPP K PP G G P P
Sbjct: 34 GNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 77
Score = 32.7 bits (73), Expect = 0.28
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 15/81 (18%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPA------SETSPGPP- 73
GN+ +G PP G Q G K P G P+ P S+++ PP
Sbjct: 227 GNQPQGPPPPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPAQGGSKSQSARSPPG 279
Query: 74 -PMGPPPPSSKAPRSPPVGSG 93
P GPP P+ PP +G
Sbjct: 280 KPQGPPQQEGNNPQGPPPPAG 300
Score = 32.3 bits (72), Expect = 0.36
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 56 PQDGSPRVPASETSPGPPP---MGPPPPSSKAPRSPPVGSGP 94
PQ SP+ P PPP GPPP P+ PP P
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 77
Score = 32.0 bits (71), Expect = 0.48
Identities = 25/76 (32%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPR--RSLLTKRVAAPQDGSPRVPASETSPGPPPMGPP 78
GN+ +G PP G Q R RS K P G + PG P GPP
Sbjct: 126 GNRPQG-PPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKP-QGPP 183
Query: 79 PPSSKAPRSPPVGSGP 94
P K P+ PP P
Sbjct: 184 PQGGKKPQGPPPPGKP 199
Score = 32.0 bits (71), Expect = 0.48
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 22/82 (26%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMG---- 76
G+K R PP G Q G + P G P+ GPPP G
Sbjct: 206 GDKSRSSQSPPGKPQGPPPQGGNQPQG------PPPPPGKPQ--------GPPPQGGNKP 251
Query: 77 --PPPPSSKAPRSPPVGSGPAS 96
PPPP P+ PP G S
Sbjct: 252 QGPPPPGK--PQGPPAQGGSKS 271
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSG-PASGVEP 100
P G P +P PG P + PPPP P PP G G PA+ V P
Sbjct: 710 PLPGGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLP 755
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 28 NDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP---SSKA 84
+ PP G P T P +P+ + PG + PPPP S++
Sbjct: 619 SSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARI 678
Query: 85 PRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPL 118
P PP G A G+ P P+ EA M PL
Sbjct: 679 PPPPPPLPGSA-GIPPPPPPLPGEAGMPPPPPPL 711
Score = 31.6 bits (70), Expect = 0.62
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPT 101
P P T+P PPP PPPP PP+ G P+
Sbjct: 590 PPAPGDSTTPPPPPPPPPPP-------PPLPGGVCISSPPS 623
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 55 APQDGSPRVPASETSPGPPPMGP-----PPPSSKAPRSPPVGSGPASGVEPTSFP 104
AP +P +P + PPP P PPP P PP G P S P
Sbjct: 571 APVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLP 625
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 61 PRVPASETSPGPPP-------MGPPPPSSKA----PRSPPVGSGPASGVEP 100
P +P S P PPP M PPPP P PP GP G+ P
Sbjct: 683 PPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGP--GIPP 731
Score = 28.5 bits (62), Expect = 5.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 64 PASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPT---SFPVESEAVMEDVLRP--- 117
P PG P + PPPP P PP P G+ P F V + V+ L P
Sbjct: 706 PPPPPLPGGPGIPPPPPFPGGPGIPP--PPPGMGMPPPPPFGFGVPAAPVLPFGLTPKKL 763
Query: 118 LEQALEDCRGHTRKQVCDDISR 139
+ ++ R + K V +D+S+
Sbjct: 764 YKPEVQLRRPNWSKLVAEDLSQ 785
Score = 28.1 bits (61), Expect = 6.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 56 PQDGSPRVPASET----SPGPPPMGPPPP--SSKAPRSPPVGSGPASGVEP 100
P GS R+P S G PP PP P + P PP+ GP G+ P
Sbjct: 671 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGP--GIPP 719
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 39.7 bits (91), Expect = 0.002
Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSG-PASGVEP 100
P G P +P PG P + PPPP P PP G G PA+ V P
Sbjct: 719 PLPGGPGIPPPPPFPGGPGIPPPPPGMGMPPPPPFGFGVPAAPVLP 764
Score = 33.9 bits (76), Expect = 0.13
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 28 NDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP---SSKA 84
+ PP G P T P +P+ + PG + PPPP S++
Sbjct: 628 SSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSPSSLPGGTAIPPPPPLPGSARI 687
Query: 85 PRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPL 118
P PP G A G+ P P+ EA M PL
Sbjct: 688 PPPPPPLPGSA-GIPPPPPPLPGEAGMPPPPPPL 720
Score = 31.6 bits (70), Expect = 0.62
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 7/41 (17%)
Query: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPT 101
P P T+P PPP PPPP PP+ G P+
Sbjct: 599 PPAPGDSTTPPPPPPPPPPP-------PPLPGGVCISSPPS 632
Score = 29.3 bits (64), Expect = 3.1
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 55 APQDGSPRVPASETSPGPPPMGP-----PPPSSKAPRSPPVGSGPASGVEPTSFP 104
AP +P +P + PPP P PPP P PP G P S P
Sbjct: 580 APVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPPPPPPPPLPGGVCISSPPSLP 634
Score = 28.5 bits (62), Expect = 5.3
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 13/51 (25%)
Query: 61 PRVPASETSPGPPP-------MGPPPPSSKA----PRSPPVGSGPASGVEP 100
P +P S P PPP M PPPP P PP GP G+ P
Sbjct: 692 PPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGPGIPPPPPFPGGP--GIPP 740
Score = 28.5 bits (62), Expect = 5.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 64 PASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPT---SFPVESEAVMEDVLRP--- 117
P PG P + PPPP P PP P G+ P F V + V+ L P
Sbjct: 715 PPPPPLPGGPGIPPPPPFPGGPGIPP--PPPGMGMPPPPPFGFGVPAAPVLPFGLTPKKL 772
Query: 118 LEQALEDCRGHTRKQVCDDISR 139
+ ++ R + K V +D+S+
Sbjct: 773 YKPEVQLRRPNWSKLVAEDLSQ 794
Score = 28.1 bits (61), Expect = 6.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 56 PQDGSPRVPASET----SPGPPPMGPPPP--SSKAPRSPPVGSGPASGVEP 100
P GS R+P S G PP PP P + P PP+ GP G+ P
Sbjct: 680 PLPGSARIPPPPPPLPGSAGIPPPPPPLPGEAGMPPPPPPLPGGP--GIPP 728
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 39.7 bits (91), Expect = 0.002
Identities = 29/91 (31%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPA-------SETSPGPP 73
GNK +G PP G Q G K P G P+ P S SP
Sbjct: 44 GNKPQGPPPPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 96
Query: 74 PMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P GPPP K PP G G P P
Sbjct: 97 PQGPPPQGGKPQGPPPQGGNKPQGPPPPGKP 127
Score = 35.4 bits (80), Expect = 0.043
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 30/114 (26%)
Query: 21 GNKERGWNDPPQFSYGLQTQAG---GPRRSLLTKRVAAPQDGSPRVPASE---------T 68
G+K R PP G Q G GP K P G P+ P ++ +
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGKPQGPPPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARS 143
Query: 69 SPGPP----------PMGPPPPSS---KAPRSPPVGS-----GPASGVEPTSFP 104
PG P P GPPPP+ + P++PP G P G P+ P
Sbjct: 144 PPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 197
Score = 34.7 bits (78), Expect = 0.073
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 59 GSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
G+P+ P+ + G P GPPPP K PP G G P P
Sbjct: 34 GNPQGPSPQG--GNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 77
Score = 32.3 bits (72), Expect = 0.36
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 56 PQDGSPRVPASETSPGPPP---MGPPPPSSKAPRSPPVGSGP 94
PQ SP+ P PPP GPPP P+ PP P
Sbjct: 36 PQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 77
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 39.3 bits (90), Expect = 0.003
Identities = 28/82 (34%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPP--MGPP 78
G RG PP + Q P L P P VP PGPPP GPP
Sbjct: 265 GPPNRGDRPPPPVLFPGQPFGQPPLGPL-------PPGPPPPVPGYGPPPGPPPPQQGPP 317
Query: 79 PPSSKAPRSPPVGSGPASGVEP 100
PP P PP GP + P
Sbjct: 318 PPPGPFPPRPPGPLGPPLTLAP 339
Score = 36.6 bits (83), Expect = 0.019
Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 54 AAPQDGSPRVPASETSPGPP--------PMGPPPPSSKAPRSPPVGSGPASGVEP 100
A P P PA +T P PP P GPPPP P PP+ P G P
Sbjct: 221 AGPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLP--PPLAGPPNRGDRP 273
Score = 36.2 bits (82), Expect = 0.025
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 56 PQDGSPRVPASETSPGPPPMGPP---PPSSKAPRSPPVGSGPASGVEPTSFPVESEAVM 111
PQ G P P P P+GPP P P PP PA V P FP + + M
Sbjct: 312 PQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGM 370
Score = 35.4 bits (80), Expect = 0.043
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPR------VPASETSPGPP-PMGPPP--PSSKAPRSPPV 90
+AG P S R A PQ G R VP + PGP P GPPP P+ + P PP+
Sbjct: 185 KAGPPGGS---SRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAGQTPPRPPL 241
Query: 91 G 91
G
Sbjct: 242 G 242
Score = 32.0 bits (71), Expect = 0.48
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 7/61 (11%)
Query: 44 PRRSLLTKRVAAPQDGSPRVPASETSPGPP----PMGPPPPSSKAPRSPPVGSGPASGVE 99
P +L +A P + R P PG P P+GP PP P P G GP G
Sbjct: 254 PPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPP---GPPPPVPGYGPPPGPP 310
Query: 100 P 100
P
Sbjct: 311 P 311
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 30 PPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAP---- 85
PP S +T A P S T+ AP S + P PP P PPSS AP
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQ---APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETT 235
Query: 86 RSPPVGSGPASGVEPTSFPVESEAV 110
+PP S +S P E+ AV
Sbjct: 236 AAPPTPSATTPAPLSSSAPPETTAV 260
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 39 TQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMG--PPPPS------SKAPRSPPV 90
T P S + AAP S PA +S PP PP PS S A P
Sbjct: 221 TTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPET 280
Query: 91 GSGPASGVEPTSFPVESEAVMEDVLRPL 118
+ P + T P S A E P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 54 AAPQDGSPRVPASETSPGPP--PMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
AAP S PA +S PP PP PS+ P + P + P + P + A
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPA 224
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 55 APQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
APQD + P + PP PP + A +PP S +S P E+ A
Sbjct: 161 APQDTTAAPPTPSATTPAPPSSSAPPETTA--APPTPSATTQAPPSSSAPPETTA 213
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 30 PPQFSYGLQTQAGGPRRSLLT----------KRVAAPQDGSPRV--PASETSPGPPPMGP 77
PP S +T A P S T + A P S P+S ++P P
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 78 PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRP 117
P PS+ P +PP P E T+ P+ + L P
Sbjct: 285 PTPSATTP-APPSSPAPQ---ETTAAPITTPNSSPTTLAP 320
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPP-------VGSGPASGVEPTSFPVESEA 109
P PA+ P PPP PPP S+ AP S P G GPA G + S A
Sbjct: 74 PPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPTPALVAGSSA 129
Score = 31.6 bits (70), Expect = 0.62
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 73 PPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
PP PPP ++ P PP PAS P S P
Sbjct: 71 PPPPPPPATAAPPPPPPPPPPPASAAAPASGP 102
Score = 28.9 bits (63), Expect = 4.0
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPA-SGVEPT 101
P + P P PPP P+S P P + +GP +G PT
Sbjct: 74 PPPPATAAPPPPPPPPPPPASAAAPASGPPAPPGLAAGPGPAGGAPT 120
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 30 PPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAP---- 85
PP S +T A P S T+ AP S + P PP P PPSS AP
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQ---APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETT 235
Query: 86 RSPPVGSGPASGVEPTSFPVESEAV 110
+PP S +S P E+ AV
Sbjct: 236 AAPPTPSATTPAPLSSSAPPETTAV 260
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 39 TQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMG--PPPPS------SKAPRSPPV 90
T P S + AAP S PA +S PP PP PS S A P
Sbjct: 221 TTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPET 280
Query: 91 GSGPASGVEPTSFPVESEAVMEDVLRPL 118
+ P + T P S A E P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 54 AAPQDGSPRVPASETSPGPP--PMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
AAP S PA +S PP PP PS+ P + P + P + P + A
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPA 224
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 55 APQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
APQD + P + PP PP + A +PP S +S P E+ A
Sbjct: 161 APQDTTAAPPTPSATTPAPPSSSAPPETTA--APPTPSATTQAPPSSSAPPETTA 213
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 30 PPQFSYGLQTQAGGPRRSLLT----------KRVAAPQDGSPRV--PASETSPGPPPMGP 77
PP S +T A P S T + A P S P+S ++P P
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 78 PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRP 117
P PS+ P +PP P E T+ P+ + L P
Sbjct: 285 PTPSATTP-APPSSPAPQ---ETTAAPITTPNSSPTTLAP 320
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 39.3 bits (90), Expect = 0.003
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 30 PPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAP---- 85
PP S +T A P S T+ AP S + P PP P PPSS AP
Sbjct: 179 PPSSSAPPETTAAPPTPSATTQ---APPSSSAPPETTAAPPTPPATTPAPPSSSAPPETT 235
Query: 86 RSPPVGSGPASGVEPTSFPVESEAV 110
+PP S +S P E+ AV
Sbjct: 236 AAPPTPSATTPAPLSSSAPPETTAV 260
Score = 30.4 bits (67), Expect = 1.4
Identities = 26/88 (29%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 39 TQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMG--PPPPS------SKAPRSPPV 90
T P S + AAP S PA +S PP PP PS S A P
Sbjct: 221 TTPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPET 280
Query: 91 GSGPASGVEPTSFPVESEAVMEDVLRPL 118
+ P + T P S A E P+
Sbjct: 281 TAAPPTPSATTPAPPSSPAPQETTAAPI 308
Score = 30.0 bits (66), Expect = 1.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 54 AAPQDGSPRVPASETSPGPP--PMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
AAP S PA +S PP PP PS+ P + P + P + P + A
Sbjct: 167 AAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPA 224
Score = 29.6 bits (65), Expect = 2.4
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 55 APQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
APQD + P + PP PP + A +PP S +S P E+ A
Sbjct: 161 APQDTTAAPPTPSATTPAPPSSSAPPETTA--APPTPSATTQAPPSSSAPPETTA 213
Score = 27.7 bits (60), Expect = 9.0
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 16/100 (16%)
Query: 30 PPQFSYGLQTQAGGPRRSLLT----------KRVAAPQDGSPRV--PASETSPGPPPMGP 77
PP S +T A P S T + A P S P+S ++P P
Sbjct: 225 PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAP 284
Query: 78 PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRP 117
P PS+ P +PP P E T+ P+ + L P
Sbjct: 285 PTPSATTP-APPSSPAPQ---ETTAAPITTPNSSPTTLAP 320
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 39.3 bits (90), Expect = 0.003
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 5 PAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTK-----RVAAPQDG 59
PAGQ +V + PG++ P + G PR ++ R A P+
Sbjct: 111 PAGQRDVAGGKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPN 170
Query: 60 SPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAV 110
P P P PPP+ PP PSS ++P V P + + PV + V
Sbjct: 171 VPAPPPPTPPPPPPPLPPPLPSSSPIKTPLV--SPPGPLTKGNLPVVAPPV 219
Score = 35.0 bits (79), Expect = 0.056
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 70 PGPPPMGPPPPSSKAPRSPPVGSGPAS 96
P PPP+ PPPP AP PP + P S
Sbjct: 6 PPPPPLPPPPPPLGAPPPPPPSAPPVS 32
Score = 32.7 bits (73), Expect = 0.28
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 61 PRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPAS 96
P P P PPP+G PPP P +PPV + +S
Sbjct: 4 PPPPPPPLPPPPPPLGAPPP--PPPSAPPVSTDTSS 37
Score = 30.0 bits (66), Expect = 1.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 70 PGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSF----PVESEAVMEDV 114
P PPP PPPP PP S P + +S P A++ D+
Sbjct: 5 PPPPPPLPPPPPPLGAPPPPPPSAPPVSTDTSSLRRADPKGRSALLADI 53
Score = 28.9 bits (63), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 74 PMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESE 108
P+ PPPP P PP+G+ P P++ PV ++
Sbjct: 2 PVPPPPPPPLPPPPPPLGAPPPP--PPSAPPVSTD 34
Score = 27.7 bits (60), Expect = 9.0
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 70 PGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPV 105
P PP PPPP P PP V+P P+
Sbjct: 220 PCAPPPPPPPPPPTPPPLPPASVLSDKAVKPQLAPL 255
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 39.3 bits (90), Expect = 0.003
Identities = 28/96 (29%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLT--KRVAAPQDGSPRVPASETSPGPP----- 73
GN+ +G PP G Q G + K P G + +S + PG P
Sbjct: 250 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPP 309
Query: 74 -----PMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P GPPPP K PP G G P P
Sbjct: 310 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 345
Score = 38.9 bits (89), Expect = 0.004
Identities = 30/95 (31%), Positives = 34/95 (35%), Gaps = 11/95 (11%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLT--KRVAAPQDG----SPRVPASETSPGPP- 73
GN+ +G PP G Q G + K P G SPR P + PP
Sbjct: 65 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQ 124
Query: 74 ----PMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P GPPPP K PP G G P P
Sbjct: 125 GGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 159
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPA------SETSPGPP- 73
GN+ +G PP G Q G K P G P+ P S +S PP
Sbjct: 126 GNQPQGPPPPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPPQGDNKSRSSRSPPG 178
Query: 74 -PMGPPPPSSKAPRSPPVGSGPASGVEP 100
P GPPP P+ PP G G P
Sbjct: 179 KPQGPPPQGGNQPQGPPPPPGKPQGPPP 206
Score = 38.1 bits (87), Expect = 0.007
Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 12/96 (12%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLT--KRVAAPQDGSPRVPASETSPGPP----- 73
GN+ +G PP G Q G + K P G + ++ + PG P
Sbjct: 188 GNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPP 247
Query: 74 -----PMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P GPPPP K PP G G P P
Sbjct: 248 QGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 283
Score = 36.2 bits (82), Expect = 0.025
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 17/92 (18%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP 80
GNK +G PP G Q G RS A G P+ P + G P GPPPP
Sbjct: 333 GNKPQG-PPPPGKPQGPPPQGGSKSRS------ARSPPGKPQGPPQQE--GNNPQGPPPP 383
Query: 81 SS---KAPRSPPVGS-----GPASGVEPTSFP 104
+ + P++PP G P G P+ P
Sbjct: 384 AGGNPQQPQAPPAGQPQGPPRPPQGGRPSRPP 415
Score = 35.4 bits (80), Expect = 0.043
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 54 AAPQDGS-PRVPASETSP--GPPPMG------PPPPSSKAPRSPPVGSGPASGVEPTSFP 104
A PQ G+ P+ P S GPPP G PPPP K PP G G P P
Sbjct: 39 APPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 98
Score = 34.3 bits (77), Expect = 0.096
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPP 80
G+K R PP G Q G + P G P+ P + G P GPPPP
Sbjct: 291 GSKSRSSRSPPGKPQGPPPQGGNQPQG------PPPPPGKPQGPPPQG--GNKPQGPPPP 342
Query: 81 SSKAPRSPPVGSGPAS 96
P+ PP G S
Sbjct: 343 GK--PQGPPPQGGSKS 356
Score = 32.3 bits (72), Expect = 0.36
Identities = 24/81 (29%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPA--------SETSPGP 72
GN+ +G PP G Q G K P G P+ P S SP
Sbjct: 312 GNQPQGPPPPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPPQGGSKSRSARSPPG 364
Query: 73 PPMGPPPPSSKAPRSPPVGSG 93
P GPP P+ PP +G
Sbjct: 365 KPQGPPQQEGNNPQGPPPPAG 385
Score = 32.0 bits (71), Expect = 0.48
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 8/89 (8%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLT---KRVAAPQDGSPRVPASETSPG----PP 73
GNK +G PP G Q G RS + K P G + PG PP
Sbjct: 271 GNKPQG-PPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPP 329
Query: 74 PMGPPPPSSKAPRSPPVGSGPASGVEPTS 102
P G P P P G P G + S
Sbjct: 330 PQGGNKPQGPPPPGKPQGPPPQGGSKSRS 358
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/48 (31%), Positives = 19/48 (39%)
Query: 57 QDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
Q+ SP + A PP G P +P P G P G +P P
Sbjct: 25 QEESPSLIAGNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPP 72
Score = 28.1 bits (61), Expect = 6.9
Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 11/80 (13%)
Query: 21 GNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPM----- 75
GNK +G PP G Q G +S ++ G P P P PP
Sbjct: 147 GNKPQG-PPPPGKPQGPPPQ--GDNKSRSSRSPPGKPQGPP--PQGGNQPQGPPPPPGKP 201
Query: 76 -GPPPPSSKAPRSPPVGSGP 94
GPPP P+ PP P
Sbjct: 202 QGPPPQGGNKPQGPPPPGKP 221
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 38.9 bits (89), Expect = 0.004
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 53 VAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVME 112
+ A + P VP + +PGP P P P AP PP PA+ V P P + +
Sbjct: 477 LGAVEAALPGVPTAPAAPGPAPSPAPVP---APPPPPPPPPPATPVTPAPVPPFEKQGEK 533
Query: 113 DVLRPLEQALEDCRGHTRKQVC 134
D + DCR + VC
Sbjct: 534 DKEDKQTFQVTDCRSLVKTLVC 555
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 49 LTKRVAAPQDGSPRVPASETSPGPPP-----MGPPPPSSKAPRSPPVGSGPASGVEPTSF 103
+ R++ P + SP P E SP PP + PPP S P SPP PAS P
Sbjct: 658 VVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDS--PTSPPPEDSPAS--PPPED 713
Query: 104 PVESEAVMEDVLRPLEQALEDC 125
+ S + E L PL + + C
Sbjct: 714 SLMSLPLEESPLLPLPEEPQLC 735
Score = 37.0 bits (84), Expect = 0.015
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 53 VAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPAS 96
++ P + SP P E+ PP PP P+ + P SPP + P S
Sbjct: 503 LSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLS 546
Score = 35.8 bits (81), Expect = 0.033
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 14/90 (15%)
Query: 17 YVKPGNKERGWNDPPQFSYGLQTQAGG---PRRSLLTKRVAAPQ-DGSPRVPAS----ET 68
Y +PG + P Q G Q Q GG P+ L + A P+ G PR+PA T
Sbjct: 4243 YQEPGTQ----TSPLQGLLGCQPQLGGFPGPQTGPLQELGAGPRPQGPPRLPAPPGALST 4298
Query: 69 SP--GPPPMGPPPPSSKAPRSPPVGSGPAS 96
P GP PPP S + P+ P P+S
Sbjct: 4299 GPVLGPVHPTPPPSSPQEPKRPSQLPSPSS 4328
Score = 35.0 bits (79), Expect = 0.056
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 53 VAAPQDGSPRVPASETSP-GPPPMGPP-PPSSKAPRSPPVGSGPASGVE-PTSFPVES 107
++ P + SP P E SP PPP P P ++P SPP S P+ +E P S P E+
Sbjct: 485 LSRPLEESPLSPPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEA 542
Score = 34.3 bits (77), Expect = 0.096
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 28/135 (20%)
Query: 5 PAGQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVP 64
P G+A V++ P N+E PP+ S P + P + S P
Sbjct: 418 PLGKAGVQLEPQLEAPLNEEMPLLPPPEESPLSPPPEESP--------TSPPPEASRLSP 469
Query: 65 ASETSPGPP--------------PMGPPPPSSKAPRSPPVGSGPASGVE--PTSFPVES- 107
E P P P+ PPP S P SPP S P S +E P S P ES
Sbjct: 470 PPEELPASPLPEALHLSRPLEESPLSPPPEES--PLSPPPESSPFSPLEESPLSPPEESP 527
Query: 108 -EAVMEDVLRPLEQA 121
+E L P +A
Sbjct: 528 PSPALETPLSPPPEA 542
Score = 33.1 bits (74), Expect = 0.21
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 52 RVAAPQDGSPRVPASETSP-GPPPMGPP--PPSSKAPRSPPVGSGPAS 96
R++ P + SP P E SP PPP PP ++P SPP P S
Sbjct: 571 RLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLS 618
Score = 32.3 bits (72), Expect = 0.36
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 19/103 (18%)
Query: 13 MAELYVKPGNKERGWNDPPQFS-------YGLQTQAGGPRRSLLTKRVAAPQDGSPRVPA 65
+ E + P +E + PP+ S L P L ++ P + SP P
Sbjct: 489 LEESPLSPPPEESPLSPPPESSPFSPLEESPLSPPEESPPSPALETPLSPPPEASPLSPP 548
Query: 66 SETSP-GPPP----MGPPP-------PSSKAPRSPPVGSGPAS 96
E SP PPP PPP P ++P SPP P S
Sbjct: 549 FEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMS 591
Score = 32.0 bits (71), Expect = 0.48
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 52 RVAAPQDGSPRVPASETSP-GPPP----MGPPPPSSKAPRSPPVGSGPAS 96
R+ P + SP P E SP PPP + PPP S P SPP P S
Sbjct: 598 RLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDS--PMSPPPEESPMS 645
Score = 31.6 bits (70), Expect = 0.62
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 12/57 (21%)
Query: 52 RVAAPQDGSPRVPASETSPGPPP-----MGP-------PPPSSKAPRSPPVGSGPAS 96
R++ P + SP P E SP PP + P PP ++P SPP P S
Sbjct: 625 RLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTS 681
Score = 31.2 bits (69), Expect = 0.81
Identities = 31/132 (23%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 7 GQAEVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAP---QDGSPRV 63
G E++ +++ P +P GL+ Q P ++L + P + GS
Sbjct: 2317 GGLELKTPDVFKAPLTPRASQVEPQSPGLGLRPQEPPPAQALAPSPPSHPDIFRPGSYTD 2376
Query: 64 PASETSPGPPPMGPPP--------------PSSKAPRSPPVGSGPASGVEPTSFPVESEA 109
P ++ P P PPP P S+ P SP S S + P P+ +EA
Sbjct: 2377 PYAQPPLTPRPQPPPPESCCALPPRSLPSDPFSRVPASPQSQSSSQSPLTPR--PLSAEA 2434
Query: 110 VMEDVLRPLEQA 121
+ P Q+
Sbjct: 2435 FCPSPVTPRFQS 2446
Score = 28.9 bits (63), Expect = 4.0
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 53 VAAPQDGSPRVP---ASETSPGPP--PMGPPPPSSKAPRSPP 89
++ P + SP P AS SP P PM PPP S P SPP
Sbjct: 608 LSPPPEESPLSPPPEASRLSPPPEDSPMSPPPEES--PMSPP 647
Score = 28.9 bits (63), Expect = 4.0
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 44 PRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSF 103
P L + P P ++ P PP + PP P S PV GPAS +
Sbjct: 969 PESPLAAPILETPISPPPEANCTDPEPVPPMILPPSPGS------PV--GPASPILMEPL 1020
Query: 104 PVESEAVMEDVLRPLEQALEDC 125
P + +++ L P C
Sbjct: 1021 PPQCSPLLQHSLVPQNSPPSQC 1042
Score = 28.5 bits (62), Expect = 5.3
Identities = 17/32 (53%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 60 SPRVPASETSPGPP--PMGPPPPSSKAPRSPP 89
SP AS SP P PM PPP S P SPP
Sbjct: 564 SPPPEASRLSPPPEESPMSPPPEES--PMSPP 593
Score = 27.7 bits (60), Expect = 9.0
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 60 SPRVPASETSPGPPPMGPPPPS-SKAPRSPPV---GSGPASG------VEPTSFPVESEA 109
+P P P PP PP PS + AP PP+ S P +G P P +
Sbjct: 2180 APAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRPGAGQPGEFHTTPPGTPRHQPS 2239
Query: 110 VMEDVLRPLEQALED 124
+ L+P +L++
Sbjct: 2240 TPDPFLKPRCPSLDN 2254
Score = 27.7 bits (60), Expect = 9.0
Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 30 PPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPP 89
PP + AG P T G+PR S P P P + P SP
Sbjct: 2209 PPMLGASSRPGAGQPGEFHTTP------PGTPRHQPSTPDPFLKPRCPSLDNLAVPESPG 2262
Query: 90 VGSGPASGVEPTSFP 104
VG G AS EP P
Sbjct: 2263 VGGGKAS--EPLLSP 2275
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 38.9 bits (89), Expect = 0.004
Identities = 27/74 (36%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 40 QAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVE 99
+ G R L K A P +P + PPP+ PPPP PR PV PA VE
Sbjct: 275 ELAGTLRQGLAKLSEALSALLPLLPGTPVDSLPPPLPPPPPPPPPPR--PVLPPPAPKVE 332
Query: 100 PTSFPVESEAVMED 113
T PV A + D
Sbjct: 333 ITPEPVSVVAAVVD 346
Score = 29.3 bits (64), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 62 RVPASETSPGPP--PMGPPPPSSKAPRSPP 89
++P SP PP P+ PPPP ++ SPP
Sbjct: 212 QLPRLALSPPPPAPPLPPPPPLAQVAPSPP 241
Score = 28.9 bits (63), Expect = 4.0
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 61 PRVPASETSPGPPPMGPPP-----PSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVL 115
PR+ S P PP PPP PS +P PP S +P+ + ++ + +
Sbjct: 214 PRLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLSASDPSLDFLRAQQETANAI 273
Query: 116 RPLEQAL 122
R L L
Sbjct: 274 RELAGTL 280
>gi|57242766 hypothetical protein LOC168455 [Homo sapiens]
Length = 235
Score = 38.9 bits (89), Expect = 0.004
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 29 DPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSP 88
DPP G T G RR + + G+ A P PPP PPPP P +
Sbjct: 110 DPP----GPPTARGQARRPVPRAAARRRRRGARAAAARRRKPRPPPPPPPPPEESCP-AK 164
Query: 89 PVGSGPASG 97
PV GP G
Sbjct: 165 PVAPGPCFG 173
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 38.5 bits (88), Expect = 0.005
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 64 PASETSPGPPPMGP-PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAV 110
P + +PGPPP P PP + P PP P G P P +EA+
Sbjct: 14 PGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEAL 61
Score = 36.2 bits (82), Expect = 0.025
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 59 GSPRV-------PA-SETSPGPPPMGPP---PPSSKAPRSPPVGSGPASGVEPTSFP 104
GSPR+ PA + SPGPPP P P S +APR+ P G PA+ + + P
Sbjct: 753 GSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAAPLAGPALP 809
Score = 32.7 bits (73), Expect = 0.28
Identities = 17/49 (34%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 42 GGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPP-PSSKAPRSPP 89
G P S P P P + P PPP PPP P P+ PP
Sbjct: 8 GRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPP 56
Score = 28.5 bits (62), Expect = 5.3
Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 30 PPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPP 89
PP G PR S AAP G P +PA S P+ PS P P
Sbjct: 776 PPASPPGAPASPRAPRTSPYGGLPAAPLAG-PALPARRLSRASRPLSASQPS--LPHGAP 832
Query: 90 VGSGPASGVEPTS 102
GPA+ P S
Sbjct: 833 ---GPAASTRPAS 842
>gi|208431781 cyclic nucleotide gated channel beta 1 isoform b [Homo
sapiens]
Length = 299
Score = 38.5 bits (88), Expect = 0.005
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 10 EVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETS 69
E + + +P W D P + G + P R PQ+ P++ A ET
Sbjct: 163 EQNLERVLPQPPKSSEVWRDEPAVATGAASDPAPPGR---------PQEMGPKLQARETP 213
Query: 70 --PGPPPMGP--PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQAL 122
P P P+ P P + AP P S + PT P ++ VL LE AL
Sbjct: 214 SLPTPIPLQPKEEPKEAPAPEPQPGSQAQTSSLPPTRDPAR---LVAWVLHRLEMAL 267
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 38.5 bits (88), Expect = 0.005
Identities = 32/117 (27%), Positives = 45/117 (38%), Gaps = 16/117 (13%)
Query: 10 EVEMAELYVKPGNKERGWNDPPQFSYGLQTQAGGPRRSLLTKRVAAPQDGSPRVPASETS 69
E + + +P W D P + G + P R PQ+ P++ A ET
Sbjct: 163 EQNLERVLPQPPKSSEVWRDEPAVATGAASDPAPPGR---------PQEMGPKLQARETP 213
Query: 70 --PGPPPMGP--PPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQAL 122
P P P+ P P + AP P S + PT P ++ VL LE AL
Sbjct: 214 SLPTPIPLQPKEEPKEAPAPEPQPGSQAQTSSLPPTRDPAR---LVAWVLHRLEMAL 267
Score = 28.9 bits (63), Expect = 4.0
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 54 AAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVE 99
AA +PR P PG PP PPP S P GPA E
Sbjct: 1179 AATDPPAPRTPPEP--PGSPPSSPPPASLGRPEGEE--EGPAEPEE 1220
>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
sapiens]
Length = 240
Score = 38.5 bits (88), Expect = 0.005
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASGVEPTSFP 104
P G+P P +P PP + PPP + P PP+G PA G P P
Sbjct: 170 PGRGTPPPPVGRATP-PPGIMAPPPGMRPPMGPPIGLPPARGT-PIGMP 216
Score = 30.4 bits (67), Expect = 1.4
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 42 GGPRRSLLTKR----VAAPQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGPASG 97
GGP + ++T + VAA + A + PP G PPP PP P G
Sbjct: 135 GGPSQQVMTPQGRGTVAAAAVAATASIAGAPTQYPPGRGTPPPPVGRATPPPGIMAPPPG 194
Query: 98 VEPTSFP 104
+ P P
Sbjct: 195 MRPPMGP 201
Score = 29.3 bits (64), Expect = 3.1
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 56 PQDGSPRVPASETSPGPPPMGPPPPSSKAPRSPPVGSGP 94
P G P + PP M PPPP + P PP G P
Sbjct: 201 PPIGLPPARGTPIGMPPPGMRPPPPGIRGP--PPPGMRP 237
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,781,898
Number of Sequences: 37866
Number of extensions: 744041
Number of successful extensions: 17421
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 889
Number of HSP's that attempted gapping in prelim test: 7849
Number of HSP's gapped (non-prelim): 7020
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.